RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 SCAPQ12770 1279 aa20.8■□□□□ 0.92
USP39-204ENST00000409766 KBTBD12Q3ZCT8 623 aa20.8■□□□□ 0.92
USP39-204ENST00000409766 INTS6LQ5JSJ4 861 aaKnown RBP20.8■□□□□ 0.92
USP39-204ENST00000409766 CCDC121Q6ZUS5 278 aa20.8■□□□□ 0.92
USP39-204ENST00000409766 ZNF534Q76KX8 674 aa20.8■□□□□ 0.92
USP39-204ENST00000409766 CTU1Q7Z7A3 348 aaKnown RBP20.8■□□□□ 0.92
USP39-204ENST00000409766 ZNF598Q86UK7 904 aaKnown RBP20.8■□□□□ 0.92
USP39-204ENST00000409766 METTL23Q86XA0 190 aa20.8■□□□□ 0.92
USP39-204ENST00000409766 PKMYT1Q99640 499 aa20.8■□□□□ 0.92
USP39-204ENST00000409766 ANLNQ9NQW6 1124 aa20.8■□□□□ 0.92
USP39-204ENST00000409766 INPP5FQ9Y2H2 1132 aa20.8■□□□□ 0.92
USP39-204ENST00000409766 NR2E3Q9Y5X4 410 aa20.8■□□□□ 0.92
USP39-204ENST00000409766 SQORQ9Y6N5 450 aa20.8■□□□□ 0.92
USP39-204ENST00000409766 I6L893 689 aaPredicted RBP20.79■□□□□ 0.92
USP39-204ENST00000409766 C1QAP02745 245 aa20.79■□□□□ 0.92
USP39-204ENST00000409766 KRT4P19013 534 aa20.79■□□□□ 0.92
USP39-204ENST00000409766 FOXN2P32314 431 aa20.79■□□□□ 0.92
USP39-204ENST00000409766 SEMA5AQ13591 1074 aa20.79■□□□□ 0.92
USP39-204ENST00000409766 PAFAH1B3Q15102 231 aaKnown RBP20.79■□□□□ 0.92
USP39-204ENST00000409766 PRKD1Q15139 912 aaPredicted RBP20.79■□□□□ 0.92
USP39-204ENST00000409766 MAP3K21Q5TCX8 1036 aa20.79■□□□□ 0.92
USP39-204ENST00000409766 RFX8Q6ZV50 586 aa20.79■□□□□ 0.92
USP39-204ENST00000409766 ECHDC2Q86YB7 292 aa20.79■□□□□ 0.92
USP39-204ENST00000409766 HASPINQ8TF76 798 aa20.79■□□□□ 0.92
USP39-204ENST00000409766 CCT6BQ92526 530 aa20.79■□□□□ 0.92
USP39-204ENST00000409766 LRRC39Q96DD0 335 aa20.79■□□□□ 0.92
USP39-204ENST00000409766 PLAC1Q9HBJ0 212 aa20.79■□□□□ 0.92
USP39-204ENST00000409766 FBXW11Q9UKB1 542 aa20.79■□□□□ 0.92
USP39-204ENST00000409766 DSEQ9UL01 958 aa20.79■□□□□ 0.92
USP39-204ENST00000409766 A0A0A0MRY4 1105 aa20.78■□□□□ 0.92
USP39-204ENST00000409766 EEF2KO00418 725 aaKnown RBP20.78■□□□□ 0.92
USP39-204ENST00000409766 CABYRO75952 493 aa20.78■□□□□ 0.92
USP39-204ENST00000409766 TAC1P20366 129 aa20.78■□□□□ 0.92
USP39-204ENST00000409766 CA4P22748 312 aa20.78■□□□□ 0.92
USP39-204ENST00000409766 PAX3P23760 479 aa20.78■□□□□ 0.92
USP39-204ENST00000409766 ACLYP53396 1101 aa20.78■□□□□ 0.92
USP39-204ENST00000409766 SEMA3BQ13214 749 aa20.78■□□□□ 0.92
USP39-204ENST00000409766 ANKRD20A2Q5SQ80 823 aa20.78■□□□□ 0.92
USP39-204ENST00000409766 ANKRD20A1Q5TYW2 823 aa20.78■□□□□ 0.92
USP39-204ENST00000409766 ANKRD20A3Q5VUR7 823 aa20.78■□□□□ 0.92
USP39-204ENST00000409766 RNF180Q86T96 592 aa20.78■□□□□ 0.92
USP39-204ENST00000409766 SLC44A1Q8WWI5 657 aa20.78■□□□□ 0.92
USP39-204ENST00000409766 PPM1EQ8WY54 764 aa20.78■□□□□ 0.92
USP39-204ENST00000409766 RSPH1Q8WYR4 309 aa20.78■□□□□ 0.92
USP39-204ENST00000409766 UROC1Q96N76 676 aa20.78■□□□□ 0.92
USP39-204ENST00000409766 SPATA13Q96N96 652 aa20.78■□□□□ 0.92
USP39-204ENST00000409766 RASSF4Q9H2L5 321 aa20.78■□□□□ 0.92
USP39-204ENST00000409766 RRN3Q9NYV6 651 aa20.78■□□□□ 0.92
USP39-204ENST00000409766 ZC3H7BQ9UGR2 993 aaKnown RBP20.78■□□□□ 0.92
USP39-204ENST00000409766 COL4A4P53420 1690 aaPredicted RBP20.78■□□□□ 0.92
USP39-204ENST00000409766 FAM72CH0Y354 149 aa20.78■□□□□ 0.92
USP39-204ENST00000409766 DCLK1O15075 740 aa20.78■□□□□ 0.92
USP39-204ENST00000409766 AMHP03971 560 aa20.78■□□□□ 0.92
USP39-204ENST00000409766 BDNFP23560 247 aa20.78■□□□□ 0.92
USP39-204ENST00000409766 FAM72AQ5TYM5 149 aa20.78■□□□□ 0.92
USP39-204ENST00000409766 PM20D1Q6GTS8 502 aa20.78■□□□□ 0.92
USP39-204ENST00000409766 FAM72DQ6L9T8 149 aa20.78■□□□□ 0.92
USP39-204ENST00000409766 FAM72BQ86X60 149 aa20.78■□□□□ 0.92
USP39-204ENST00000409766 CFAP36Q96G28 342 aa20.78■□□□□ 0.92
USP39-204ENST00000409766 TMLHEQ9NVH6 421 aa20.78■□□□□ 0.92
USP39-204ENST00000409766 TTLL3Q9Y4R7 772 aa20.78■□□□□ 0.92
USP39-204ENST00000409766 PTPRDP23468 1912 aa20.78■□□□□ 0.92
USP39-204ENST00000409766 MYO18AQ92614 2054 aaKnown RBP20.78■□□□□ 0.92
USP39-204ENST00000409766 INPPL1O15357 1258 aa20.77■□□□□ 0.92
USP39-204ENST00000409766 FSBPO95073 299 aa20.77■□□□□ 0.92
USP39-204ENST00000409766 ITGB1P05556 798 aa20.77■□□□□ 0.92
USP39-204ENST00000409766 GLUD2P49448 558 aa20.77■□□□□ 0.92
USP39-204ENST00000409766 SF3A3Q12874 501 aaKnown RBP eCLIP20.77■□□□□ 0.92
USP39-204ENST00000409766 SPARCL1Q14515 664 aa20.77■□□□□ 0.92
USP39-204ENST00000409766 PRPF39Q86UA1 669 aaKnown RBP20.77■□□□□ 0.92
USP39-204ENST00000409766 OR10T2Q8NGX3 314 aa20.77■□□□□ 0.92
USP39-204ENST00000409766 IRGQQ8WZA9 623 aa20.77■□□□□ 0.92
USP39-204ENST00000409766 SIGLEC10Q96LC7 697 aa20.77■□□□□ 0.92
USP39-204ENST00000409766 DDIT4Q9NX09 232 aa20.77■□□□□ 0.92
USP39-204ENST00000409766 CCT8L1PA6NM43 557 aa20.77■□□□□ 0.91
USP39-204ENST00000409766 PDK1Q15118 436 aa20.77■□□□□ 0.91
USP39-204ENST00000409766 SLC1A5Q15758 541 aa20.77■□□□□ 0.91
USP39-204ENST00000409766 SPRED3Q2MJR0 410 aa20.77■□□□□ 0.91
USP39-204ENST00000409766 DCLRE1AQ6PJP8 1040 aa20.77■□□□□ 0.91
USP39-204ENST00000409766 LRRTM3Q86VH5 581 aa20.77■□□□□ 0.91
USP39-204ENST00000409766 NLRC5Q86WI3 1866 aa20.77■□□□□ 0.91
USP39-204ENST00000409766 NETO2Q8NC67 525 aa20.77■□□□□ 0.91
USP39-204ENST00000409766 P2RY11Q96G91 374 aa20.77■□□□□ 0.91
USP39-204ENST00000409766 PAIP2Q9BPZ3 127 aaKnown RBP20.77■□□□□ 0.91
USP39-204ENST00000409766 KDM4CQ9H3R0 1056 aa20.77■□□□□ 0.91
USP39-204ENST00000409766 GRID1Q9ULK0 1009 aa20.77■□□□□ 0.91
USP39-204ENST00000409766 USP15Q9Y4E8 981 aaPredicted RBP20.77■□□□□ 0.91
USP39-204ENST00000409766 FRMPD3Q5JV73 1810 aa20.76■□□□□ 0.91
USP39-204ENST00000409766 TRDMT1O14717 391 aaKnown RBP20.76■□□□□ 0.91
USP39-204ENST00000409766 F9P00740 461 aa20.76■□□□□ 0.91
USP39-204ENST00000409766 FDFT1P37268 417 aa20.76■□□□□ 0.91
USP39-204ENST00000409766 AP1B1Q10567 949 aa20.76■□□□□ 0.91
USP39-204ENST00000409766 LACTB2Q53H82 288 aaPredicted RBP20.76■□□□□ 0.91
USP39-204ENST00000409766 OVOS1Q6IE37 1185 aa20.76■□□□□ 0.91
USP39-204ENST00000409766 DENND5BQ6ZUT9 1274 aa20.76■□□□□ 0.91
USP39-204ENST00000409766 SCML4Q8N228 414 aa20.76■□□□□ 0.91
USP39-204ENST00000409766 EDEM1Q92611 657 aa20.76■□□□□ 0.91
USP39-204ENST00000409766 SUSD3Q96L08 255 aa20.76■□□□□ 0.91
USP39-204ENST00000409766 CAPNS2Q96L46 248 aa20.76■□□□□ 0.91
USP39-204ENST00000409766 TMEM209Q96SK2 561 aa20.76■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms