RNA–Protein interactions for RNA: ENST00000409470.5

USP39-203, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,034 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-203ENST00000409470 ACTL7BQ9Y614 415 aa21.4■■□□□ 1.02
USP39-203ENST00000409470 AVILO75366 819 aa21.39■■□□□ 1.02
USP39-203ENST00000409470 METTL18O95568 372 aa21.39■■□□□ 1.02
USP39-203ENST00000409470 GRIK1P39086 918 aa21.39■■□□□ 1.02
USP39-203ENST00000409470 IFNAR2P48551 515 aa21.39■■□□□ 1.02
USP39-203ENST00000409470 VEGFBP49765 207 aa21.39■■□□□ 1.02
USP39-203ENST00000409470 SCAPQ12770 1279 aa21.39■■□□□ 1.02
USP39-203ENST00000409470 IFRD2Q12894 506 aaPredicted RBP21.39■■□□□ 1.02
USP39-203ENST00000409470 DPYSQ14117 519 aa21.39■■□□□ 1.02
USP39-203ENST00000409470 KLHL38Q2WGJ6 581 aa21.39■■□□□ 1.02
USP39-203ENST00000409470 NETO2Q8NC67 525 aa21.39■■□□□ 1.02
USP39-203ENST00000409470 FERMT1Q9BQL6 677 aa21.39■■□□□ 1.02
USP39-203ENST00000409470 WDCPQ9H6R7 721 aa21.39■■□□□ 1.02
USP39-203ENST00000409470 ANLNQ9NQW6 1124 aa21.39■■□□□ 1.02
USP39-203ENST00000409470 PSMC3IPQ9P2W1 217 aaPredicted RBP21.39■■□□□ 1.02
USP39-203ENST00000409470 FAM72CH0Y354 149 aa21.39■■□□□ 1.01
USP39-203ENST00000409470 VAV1P15498 845 aa21.39■■□□□ 1.01
USP39-203ENST00000409470 KRT15P19012 456 aa21.39■■□□□ 1.01
USP39-203ENST00000409470 MAGEA6P43360 314 aa21.39■■□□□ 1.01
USP39-203ENST00000409470 TPI1P60174 286 aa21.39■■□□□ 1.01
USP39-203ENST00000409470 AP1B1Q10567 949 aa21.39■■□□□ 1.01
USP39-203ENST00000409470 FAM72AQ5TYM5 149 aa21.39■■□□□ 1.01
USP39-203ENST00000409470 FAM72DQ6L9T8 149 aa21.39■■□□□ 1.01
USP39-203ENST00000409470 CPLX4Q7Z7G2 160 aa21.39■■□□□ 1.01
USP39-203ENST00000409470 FAM72BQ86X60 149 aa21.39■■□□□ 1.01
USP39-203ENST00000409470 IGDCC3Q8IVU1 814 aa21.39■■□□□ 1.01
USP39-203ENST00000409470 SCAMP5Q8TAC9 235 aa21.39■■□□□ 1.01
USP39-203ENST00000409470 TRIM62Q9BVG3 475 aa21.39■■□□□ 1.01
USP39-203ENST00000409470 TEX264Q9Y6I9 313 aa21.39■■□□□ 1.01
USP39-203ENST00000409470 STK10O94804 968 aaKnown RBP21.38■■□□□ 1.01
USP39-203ENST00000409470 OR4Q2P0C623 313 aa21.38■■□□□ 1.01
USP39-203ENST00000409470 PRMT2P55345 433 aa21.38■■□□□ 1.01
USP39-203ENST00000409470 YWHAGP61981 247 aaKnown RBP eCLIP21.38■■□□□ 1.01
USP39-203ENST00000409470 EFTUD2Q15029 972 aaKnown RBP eCLIP21.38■■□□□ 1.013e-8■■□□□ 13.7
USP39-203ENST00000409470 LRRC14Q15048 493 aa21.38■■□□□ 1.01
USP39-203ENST00000409470 PAFAH1B3Q15102 231 aaKnown RBP21.38■■□□□ 1.01
USP39-203ENST00000409470 PDK1Q15118 436 aa21.38■■□□□ 1.01
USP39-203ENST00000409470 SLC39A12Q504Y0 691 aa21.38■■□□□ 1.01
USP39-203ENST00000409470 TAX1BP1Q86VP1 789 aa21.38■■□□□ 1.01
USP39-203ENST00000409470 ABI1Q8IZP0 508 aa21.38■■□□□ 1.01
USP39-203ENST00000409470 SCML4Q8N228 414 aa21.38■■□□□ 1.01
USP39-203ENST00000409470 CCNYQ8ND76 341 aa21.38■■□□□ 1.01
USP39-203ENST00000409470 RNF34Q969K3 372 aa21.38■■□□□ 1.01
USP39-203ENST00000409470 XRN2Q9H0D6 950 aaKnown RBP eCLIP21.38■■□□□ 1.01
USP39-203ENST00000409470 ACSS3Q9H6R3 686 aa21.38■■□□□ 1.01
USP39-203ENST00000409470 TMEM161AQ9NX61 479 aa21.38■■□□□ 1.01
USP39-203ENST00000409470 DNAJB4Q9UDY4 337 aa21.38■■□□□ 1.01
USP39-203ENST00000409470 NR2E3Q9Y5X4 410 aa21.38■■□□□ 1.01
USP39-203ENST00000409470 SF3B1O75533 1304 aaKnown RBP eCLIP21.38■■□□□ 1.013e-9■■■■■ 206.8
USP39-203ENST00000409470 TMEM189-UBE2V1I3L0A0 370 aa21.38■■□□□ 1.01
USP39-203ENST00000409470 PPP1R12AO14974 1030 aaPredicted RBP21.38■■□□□ 1.01
USP39-203ENST00000409470 TADA2AO75478 443 aa21.38■■□□□ 1.01
USP39-203ENST00000409470 BFSP2Q13515 415 aa21.38■■□□□ 1.01
USP39-203ENST00000409470 PDZD4Q76G19 769 aaPredicted RBP21.38■■□□□ 1.01
USP39-203ENST00000409470 TAC4Q86UU9 113 aa21.38■■□□□ 1.01
USP39-203ENST00000409470 TRABD2AQ86V40 505 aa21.38■■□□□ 1.01
USP39-203ENST00000409470 TKTL2Q9H0I9 626 aa21.38■■□□□ 1.01
USP39-203ENST00000409470 NKIRAS1Q9NYS0 192 aa21.38■■□□□ 1.01
USP39-203ENST00000409470 FETUBQ9UGM5 382 aa21.38■■□□□ 1.01
USP39-203ENST00000409470 A0A0A0MRY4 1105 aa21.37■■□□□ 1.01
USP39-203ENST00000409470 I6L893 689 aaPredicted RBP21.37■■□□□ 1.01
USP39-203ENST00000409470 DCLK1O15075 740 aa21.37■■□□□ 1.01
USP39-203ENST00000409470 ERCC2P18074 760 aa21.37■■□□□ 1.01
USP39-203ENST00000409470 CXCR3P49682 368 aa21.37■■□□□ 1.01
USP39-203ENST00000409470 SLC5A3P53794 718 aa21.37■■□□□ 1.01
USP39-203ENST00000409470 RASA2Q15283 850 aa21.37■■□□□ 1.01
USP39-203ENST00000409470 PKN2Q16513 984 aaKnown RBP21.37■■□□□ 1.01
USP39-203ENST00000409470 ANKRD20A2Q5SQ80 823 aa21.37■■□□□ 1.01
USP39-203ENST00000409470 ANKRD20A1Q5TYW2 823 aa21.37■■□□□ 1.01
USP39-203ENST00000409470 ANKRD20A3Q5VUR7 823 aa21.37■■□□□ 1.01
USP39-203ENST00000409470 MCUQ8NE86 351 aa21.37■■□□□ 1.01
USP39-203ENST00000409470 SH3TC2Q8TF17 1288 aa21.37■■□□□ 1.01
USP39-203ENST00000409470 SPATA13Q96N96 652 aa21.37■■□□□ 1.01
USP39-203ENST00000409470 SEPT10Q9P0V9 454 aa21.37■■□□□ 1.01
USP39-203ENST00000409470 ZNF638Q14966 1978 aaKnown RBP21.36■■□□□ 1.01
USP39-203ENST00000409470 AMHP03971 560 aa21.36■■□□□ 1.01
USP39-203ENST00000409470 SEMA3BQ13214 749 aa21.36■■□□□ 1.01
USP39-203ENST00000409470 PRKD1Q15139 912 aaPredicted RBP21.36■■□□□ 1.01
USP39-203ENST00000409470 QPCTQ16769 361 aa21.36■■□□□ 1.01
USP39-203ENST00000409470 DENND5BQ6ZUT9 1274 aa21.36■■□□□ 1.01
USP39-203ENST00000409470 CAND1Q86VP6 1230 aaKnown RBP21.36■■□□□ 1.01
USP39-203ENST00000409470 SCN4BQ8IWT1 228 aa21.36■■□□□ 1.01
USP39-203ENST00000409470 DCP1BQ8IZD4 617 aaKnown RBP21.36■■□□□ 1.01
USP39-203ENST00000409470 DQX1Q8TE96 717 aaKnown RBP21.36■■□□□ 1.01
USP39-203ENST00000409470 CFAP36Q96G28 342 aa21.36■■□□□ 1.01
USP39-203ENST00000409470 PAFAH2Q99487 392 aa21.36■■□□□ 1.01
USP39-203ENST00000409470 TRABDQ9H4I3 376 aa21.36■■□□□ 1.01
USP39-203ENST00000409470 CCDC134Q9H6E4 229 aa21.36■■□□□ 1.01
USP39-203ENST00000409470 MLXIPLQ9NP71 852 aa21.36■■□□□ 1.01
USP39-203ENST00000409470 ABI2Q9NYB9 513 aaPredicted RBP21.36■■□□□ 1.01
USP39-203ENST00000409470 PCDHB7Q9Y5E2 793 aa21.36■■□□□ 1.01
USP39-203ENST00000409470 NBNO60934 754 aa21.36■■□□□ 1.01
USP39-203ENST00000409470 SPAG6O75602 509 aa21.36■■□□□ 1.01
USP39-203ENST00000409470 COL6A1P12109 1028 aa21.36■■□□□ 1.01
USP39-203ENST00000409470 TPSB2P20231 275 aa21.36■■□□□ 1.01
USP39-203ENST00000409470 DRD4P21917 467 aa21.36■■□□□ 1.01
USP39-203ENST00000409470 MSH2P43246 934 aa21.36■■□□□ 1.01
USP39-203ENST00000409470 HCAR3P49019 387 aa21.36■■□□□ 1.01
USP39-203ENST00000409470 TPSAB1Q15661 275 aa21.36■■□□□ 1.01
USP39-203ENST00000409470 DBF4BQ8NFT6 615 aa21.36■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms