RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 SLC26A9Q7LBE3 791 aa13.96□□□□□ -0.17
LIMS1-204ENST00000409441 JAMLQ86YT9 394 aa13.96□□□□□ -0.17
LIMS1-204ENST00000409441 C3orf20Q8ND61 904 aa13.96□□□□□ -0.17
LIMS1-204ENST00000409441 ITFG1Q8TB96 612 aa13.96□□□□□ -0.17
LIMS1-204ENST00000409441 EDEM1Q92611 657 aa13.96□□□□□ -0.17
LIMS1-204ENST00000409441 MRPS31Q92665 395 aaKnown RBP13.96□□□□□ -0.17
LIMS1-204ENST00000409441 GCNAQ96QF7 691 aa13.96□□□□□ -0.17
LIMS1-204ENST00000409441 FAM129AQ9BZQ8 928 aa13.96□□□□□ -0.17
LIMS1-204ENST00000409441 ABCC13Q9NSE7 274 aa13.96□□□□□ -0.17
LIMS1-204ENST00000409441 PARVAQ9NVD7 372 aa13.96□□□□□ -0.17
LIMS1-204ENST00000409441 ASNSD1Q9NWL6 643 aa13.96□□□□□ -0.17
LIMS1-204ENST00000409441 CLIC5Q9NZA1 410 aa13.96□□□□□ -0.17
LIMS1-204ENST00000409441 REV3LO60673 3130 aa13.96□□□□□ -0.18
LIMS1-204ENST00000409441 SIGLEC16A6NMB1 481 aa13.95□□□□□ -0.18
LIMS1-204ENST00000409441 PSTPIP1O43586 416 aa13.95□□□□□ -0.18
LIMS1-204ENST00000409441 GJB6O95452 261 aa13.95□□□□□ -0.18
LIMS1-204ENST00000409441 RARGP13631 454 aa13.95□□□□□ -0.18
LIMS1-204ENST00000409441 TEAD2Q15562 447 aa13.95□□□□□ -0.18
LIMS1-204ENST00000409441 HECTD3Q5T447 861 aa13.95□□□□□ -0.18
LIMS1-204ENST00000409441 TXNDC8Q6A555 127 aa13.95□□□□□ -0.18
LIMS1-204ENST00000409441 DNAJC24Q6P3W2 148 aa13.95□□□□□ -0.18
LIMS1-204ENST00000409441 DDX42Q86XP3 938 aaKnown RBP eCLIP13.95□□□□□ -0.18
LIMS1-204ENST00000409441 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.95□□□□□ -0.18
LIMS1-204ENST00000409441 MAGOHBQ96A72 148 aaKnown RBP13.95□□□□□ -0.18
LIMS1-204ENST00000409441 POPDC2Q9HBU9 364 aa13.95□□□□□ -0.18
LIMS1-204ENST00000409441 NAALADL1Q9UQQ1 740 aa13.95□□□□□ -0.18
LIMS1-204ENST00000409441 USP15Q9Y4E8 981 aaPredicted RBP13.95□□□□□ -0.18
LIMS1-204ENST00000409441 C2orf78A6NCI8 922 aa13.94□□□□□ -0.18
LIMS1-204ENST00000409441 A6NNZ2 444 aa13.94□□□□□ -0.18
LIMS1-204ENST00000409441 CAPN9O14815 690 aa13.94□□□□□ -0.18
LIMS1-204ENST00000409441 TBX18O95935 607 aa13.94□□□□□ -0.18
LIMS1-204ENST00000409441 RALAP11233 206 aa13.94□□□□□ -0.18
LIMS1-204ENST00000409441 NCAM1P13591 858 aa13.94□□□□□ -0.18
LIMS1-204ENST00000409441 RFC1P35251 1148 aaPredicted RBP13.94□□□□□ -0.18
LIMS1-204ENST00000409441 CYP4F8P98187 520 aa13.94□□□□□ -0.18
LIMS1-204ENST00000409441 CBX2Q14781 532 aaPredicted RBP13.94□□□□□ -0.18
LIMS1-204ENST00000409441 TUBB8Q3ZCM7 444 aa13.94□□□□□ -0.18
LIMS1-204ENST00000409441 ARHGAP15Q53QZ3 475 aa13.94□□□□□ -0.18
LIMS1-204ENST00000409441 PPP1R15BQ5SWA1 713 aa13.94□□□□□ -0.18
LIMS1-204ENST00000409441 SYPL2Q5VXT5 272 aa13.94□□□□□ -0.18
LIMS1-204ENST00000409441 AADACL2Q6P093 401 aa13.94□□□□□ -0.18
LIMS1-204ENST00000409441 BEND5Q7L4P6 421 aa13.94□□□□□ -0.18
LIMS1-204ENST00000409441 DEFB106AQ8N104 65 aa13.94□□□□□ -0.18
LIMS1-204ENST00000409441 ING5Q8WYH8 240 aa13.94□□□□□ -0.18
LIMS1-204ENST00000409441 SUSD6Q92537 303 aa13.94□□□□□ -0.18
LIMS1-204ENST00000409441 SLCO2A1Q92959 643 aa13.94□□□□□ -0.18
LIMS1-204ENST00000409441 NECTIN4Q96NY8 510 aa13.94□□□□□ -0.18
LIMS1-204ENST00000409441 CYP2S1Q96SQ9 504 aa13.94□□□□□ -0.18
LIMS1-204ENST00000409441 TRIM51Q9BSJ1 452 aa13.94□□□□□ -0.18
LIMS1-204ENST00000409441 TRIM62Q9BVG3 475 aa13.94□□□□□ -0.18
LIMS1-204ENST00000409441 SLC46A2Q9BY10 475 aa13.94□□□□□ -0.18
LIMS1-204ENST00000409441 NEUROG2Q9H2A3 272 aa13.94□□□□□ -0.18
LIMS1-204ENST00000409441 LRRC19Q9H756 370 aa13.94□□□□□ -0.18
LIMS1-204ENST00000409441 CCSER2Q9H7U1 834 aa13.94□□□□□ -0.18
LIMS1-204ENST00000409441 METTL5Q9NRN9 209 aaKnown RBP13.94□□□□□ -0.18
LIMS1-204ENST00000409441 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.94□□□□□ -0.18
LIMS1-204ENST00000409441 NUDT5Q9UKK9 219 aa13.94□□□□□ -0.18
LIMS1-204ENST00000409441 GREB1Q4ZG55 1949 aa13.94□□□□□ -0.18
LIMS1-204ENST00000409441 CLUHO75153 1309 aa13.94□□□□□ -0.18
LIMS1-204ENST00000409441 GRXCR2A6NFK2 248 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 TLR5O60602 858 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 HDCP19113 662 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 HSD17B3P37058 310 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 COILP38432 576 aaPredicted RBP13.93□□□□□ -0.18
LIMS1-204ENST00000409441 RPL7AP62424 266 aaKnown RBP13.93□□□□□ -0.18
LIMS1-204ENST00000409441 SIX1Q15475 284 aaPredicted RBP13.93□□□□□ -0.18
LIMS1-204ENST00000409441 LEXMQ3ZCV2 418 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 DCAF6Q58WW2 860 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 STXBP5Q5T5C0 1151 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 GPR158Q5T848 1215 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 DCUN1D2Q6PH85 259 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 CCDC137Q6PK04 289 aaKnown RBP13.93□□□□□ -0.18
LIMS1-204ENST00000409441 ARCQ7LC44 396 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 TMC3Q7Z5M5 1100 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 ADAT2Q7Z6V5 191 aaKnown RBP13.93□□□□□ -0.18
LIMS1-204ENST00000409441 RHOT1Q8IXI2 618 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 ZNF276Q8N554 614 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 EMC1Q8N766 993 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 MAB21L3Q8N8X9 362 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 JOSD2Q8TAC2 188 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 RNF139Q8WU17 664 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 SLC2A13Q96QE2 648 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 FMO2Q99518 471 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 RNF38Q9H0F5 515 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 DPH5Q9H2P9 285 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 POMKQ9H5K3 350 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 TASP1Q9H6P5 420 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 TRPC7Q9HCX4 862 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.93□□□□□ -0.18
LIMS1-204ENST00000409441 PRDM4Q9UKN5 801 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 PLAAQ9Y263 795 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 PATJQ8NI35 1801 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 SOBPA7XYQ1 873 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 COCHO43405 550 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 MBTPS2O43462 519 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 SHOX2O60902 331 aaPredicted RBP13.93□□□□□ -0.18
LIMS1-204ENST00000409441 PPFIA2O75334 1257 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 PDGFRAP16234 1089 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 CEBPBP17676 345 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 NOS2P35228 1153 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms