RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 NPM3O75607 178 aaKnown RBP12.29□□□□□ -0.44
HMGB1-206ENST00000405805 VNN1O95497 513 aa12.29□□□□□ -0.44
HMGB1-206ENST00000405805 C4BPAP04003 597 aaKnown RBP12.29□□□□□ -0.44
HMGB1-206ENST00000405805 NELFEP18615 380 aaKnown RBP12.29□□□□□ -0.44
HMGB1-206ENST00000405805 NAMPTP43490 491 aa12.29□□□□□ -0.44
HMGB1-206ENST00000405805 GPX6P59796 221 aa12.29□□□□□ -0.44
HMGB1-206ENST00000405805 DNAL1Q4LDG9 190 aa12.29□□□□□ -0.44
HMGB1-206ENST00000405805 SCARA3Q6AZY7 606 aa12.29□□□□□ -0.44
HMGB1-206ENST00000405805 PRR23CQ6ZRP0 262 aa12.29□□□□□ -0.44
HMGB1-206ENST00000405805 CATSPER4Q7RTX7 472 aa12.29□□□□□ -0.44
HMGB1-206ENST00000405805 TMPRSS6Q8IU80 811 aa12.29□□□□□ -0.44
HMGB1-206ENST00000405805 GPRASP2Q96D09 838 aa12.29□□□□□ -0.44
HMGB1-206ENST00000405805 B3GNT5Q9BYG0 378 aa12.29□□□□□ -0.44
HMGB1-206ENST00000405805 FAM192AQ9GZU8 254 aa12.29□□□□□ -0.44
HMGB1-206ENST00000405805 TRPV6Q9H1D0 765 aa12.29□□□□□ -0.44
HMGB1-206ENST00000405805 NOL6Q9H6R4 1146 aaKnown RBP12.29□□□□□ -0.44
HMGB1-206ENST00000405805 IL1RL2Q9HB29 575 aa12.29□□□□□ -0.44
HMGB1-206ENST00000405805 ACTL7BQ9Y614 415 aa12.29□□□□□ -0.44
HMGB1-206ENST00000405805 GMPRP36959 345 aa12.28□□□□□ -0.44
HMGB1-206ENST00000405805 TRMT10BQ6PF06 316 aaKnown RBP12.28□□□□□ -0.44
HMGB1-206ENST00000405805 ADAM32Q8TC27 787 aa12.28□□□□□ -0.44
HMGB1-206ENST00000405805 EBF4Q9BQW3 602 aa12.28□□□□□ -0.44
HMGB1-206ENST00000405805 TAGLN3Q9UI15 199 aa12.28□□□□□ -0.44
HMGB1-206ENST00000405805 GRID1Q9ULK0 1009 aa12.28□□□□□ -0.44
HMGB1-206ENST00000405805 ERVK-10P10266 1014 aa12.28□□□□□ -0.44
HMGB1-206ENST00000405805 TXNP10599 105 aaKnown RBP12.28□□□□□ -0.44
HMGB1-206ENST00000405805 NDST1P52848 882 aa12.28□□□□□ -0.44
HMGB1-206ENST00000405805 TBC1D25Q3MII6 688 aa12.28□□□□□ -0.44
HMGB1-206ENST00000405805 CRYGNQ8WXF5 182 aa12.28□□□□□ -0.44
HMGB1-206ENST00000405805 CLEC4DQ8WXI8 215 aa12.28□□□□□ -0.44
HMGB1-206ENST00000405805 HAUS8Q9BT25 410 aa12.28□□□□□ -0.44
HMGB1-206ENST00000405805 SYT11Q9BT88 431 aa12.28□□□□□ -0.44
HMGB1-206ENST00000405805 CCDC134Q9H6E4 229 aa12.28□□□□□ -0.44
HMGB1-206ENST00000405805 TRIM39Q9HCM9 518 aa12.28□□□□□ -0.44
HMGB1-206ENST00000405805 TRIM17Q9Y577 477 aa12.28□□□□□ -0.44
HMGB1-206ENST00000405805 HNRNPCL2B2RXH8 293 aa12.28□□□□□ -0.44
HMGB1-206ENST00000405805 SPTLC1O15269 473 aa12.28□□□□□ -0.44
HMGB1-206ENST00000405805 ADCY6O43306 1168 aa12.28□□□□□ -0.44
HMGB1-206ENST00000405805 HNRNPCL1O60812 293 aaKnown RBP12.28□□□□□ -0.44
HMGB1-206ENST00000405805 CRCPO75575 148 aa12.28□□□□□ -0.44
HMGB1-206ENST00000405805 MICAL2O94851 1124 aa12.28□□□□□ -0.44
HMGB1-206ENST00000405805 MFN2O95140 757 aa12.28□□□□□ -0.44
HMGB1-206ENST00000405805 NEK3P51956 506 aa12.28□□□□□ -0.44
HMGB1-206ENST00000405805 LAMTOR4Q0VGL1 99 aa12.28□□□□□ -0.44
HMGB1-206ENST00000405805 CAPSQ13938 189 aa12.28□□□□□ -0.44
HMGB1-206ENST00000405805 SURF1Q15526 300 aa12.28□□□□□ -0.44
HMGB1-206ENST00000405805 RHBDF2Q6PJF5 856 aa12.28□□□□□ -0.44
HMGB1-206ENST00000405805 ZSCAN18Q8TBC5 510 aaPredicted RBP12.28□□□□□ -0.44
HMGB1-206ENST00000405805 UTP4Q969X6 686 aaKnown RBP12.28□□□□□ -0.44
HMGB1-206ENST00000405805 TASP1Q9H6P5 420 aa12.28□□□□□ -0.44
HMGB1-206ENST00000405805 C20orf96Q9NUD7 363 aaPredicted RBP12.28□□□□□ -0.44
HMGB1-206ENST00000405805 LGALS13Q9UHV8 139 aa12.28□□□□□ -0.44
HMGB1-206ENST00000405805 TSR3Q9UJK0 312 aaKnown RBP12.28□□□□□ -0.44
HMGB1-206ENST00000405805 TSPAN16Q9UKR8 245 aa12.28□□□□□ -0.44
HMGB1-206ENST00000405805 EFNA5P52803 228 aa12.27□□□□□ -0.44
HMGB1-206ENST00000405805 PARP6Q2NL67 630 aa12.27□□□□□ -0.44
HMGB1-206ENST00000405805 TRAF7Q6Q0C0 670 aa12.27□□□□□ -0.44
HMGB1-206ENST00000405805 IFNEQ86WN2 208 aa12.27□□□□□ -0.44
HMGB1-206ENST00000405805 PHF13Q86YI8 300 aaPredicted RBP12.27□□□□□ -0.44
HMGB1-206ENST00000405805 IGDCC3Q8IVU1 814 aa12.27□□□□□ -0.44
HMGB1-206ENST00000405805 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.27□□□□□ -0.44
HMGB1-206ENST00000405805 SAMD3Q8N6K7 520 aa12.27□□□□□ -0.44
HMGB1-206ENST00000405805 COPS5Q92905 334 aa12.27□□□□□ -0.44
HMGB1-206ENST00000405805 VCPIP1Q96JH7 1222 aa12.27□□□□□ -0.44
HMGB1-206ENST00000405805 A0A1B0GUL6 1792 aa12.27□□□□□ -0.45
HMGB1-206ENST00000405805 MTA2O94776 668 aa12.27□□□□□ -0.45
HMGB1-206ENST00000405805 NFICP08651 508 aa12.27□□□□□ -0.45
HMGB1-206ENST00000405805 SRGAP2BP0DMP2 458 aa12.27□□□□□ -0.45
HMGB1-206ENST00000405805 GM2AP17900 193 aa12.27□□□□□ -0.45
HMGB1-206ENST00000405805 MGAT1P26572 445 aa12.27□□□□□ -0.45
HMGB1-206ENST00000405805 GRIA1P42261 906 aa12.27□□□□□ -0.45
HMGB1-206ENST00000405805 PTGER2P43116 358 aa12.27□□□□□ -0.45
HMGB1-206ENST00000405805 SNX16P57768 344 aa12.27□□□□□ -0.45
HMGB1-206ENST00000405805 FSTL1Q12841 308 aa12.27□□□□□ -0.45
HMGB1-206ENST00000405805 PRPSAP1Q14558 356 aa12.27□□□□□ -0.45
HMGB1-206ENST00000405805 MAPK11Q15759 364 aa12.27□□□□□ -0.45
HMGB1-206ENST00000405805 PLEKHG4Q58EX7 1191 aa12.27□□□□□ -0.45
HMGB1-206ENST00000405805 RALGPS1Q5JS13 557 aa12.27□□□□□ -0.45
HMGB1-206ENST00000405805 KCNT2Q6UVM3 1135 aa12.27□□□□□ -0.45
HMGB1-206ENST00000405805 CMC1Q7Z7K0 106 aa12.27□□□□□ -0.45
HMGB1-206ENST00000405805 SIX6OS1Q8N1H7 587 aa12.27□□□□□ -0.45
HMGB1-206ENST00000405805 CALML6Q8TD86 181 aa12.27□□□□□ -0.45
HMGB1-206ENST00000405805 SPC25Q9HBM1 224 aa12.27□□□□□ -0.45
HMGB1-206ENST00000405805 SAR1AQ9NR31 198 aa12.27□□□□□ -0.45
HMGB1-206ENST00000405805 BFARQ9NZS9 450 aa12.27□□□□□ -0.45
HMGB1-206ENST00000405805 COMMD3-BMI1R4GMX3 469 aa12.27□□□□□ -0.45
HMGB1-206ENST00000405805 ABHD2P08910 425 aa12.27□□□□□ -0.45
HMGB1-206ENST00000405805 NME5P56597 212 aa12.27□□□□□ -0.45
HMGB1-206ENST00000405805 TMEM132DQ14C87 1099 aa12.27□□□□□ -0.45
HMGB1-206ENST00000405805 SLC5A9Q2M3M2 681 aa12.27□□□□□ -0.45
HMGB1-206ENST00000405805 PPM1JQ5JR12 505 aa12.27□□□□□ -0.45
HMGB1-206ENST00000405805 POTEAQ6S8J7 498 aa12.27□□□□□ -0.45
HMGB1-206ENST00000405805 C12orf56Q8IXR9 622 aa12.27□□□□□ -0.45
HMGB1-206ENST00000405805 SH3TC2Q8TF17 1288 aa12.27□□□□□ -0.45
HMGB1-206ENST00000405805 NT5C1AQ9BXI3 368 aa12.27□□□□□ -0.45
HMGB1-206ENST00000405805 PNPOQ9NVS9 261 aa12.27□□□□□ -0.45
HMGB1-206ENST00000405805 TNRC6CQ9HCJ0 1690 aaKnown RBP12.27□□□□□ -0.45
HMGB1-206ENST00000405805 A0A087WZ62 844 aa12.26□□□□□ -0.45
HMGB1-206ENST00000405805 CXorf49A8MYA2 514 aaPredicted RBP12.26□□□□□ -0.45
HMGB1-206ENST00000405805 APOC4-APOC2K7ER74 178 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms