RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 AP4E1Q9UPM8 1137 aa14.75□□□□□ -0.05
SKA1-202ENST00000398452 SPTBN5Q9NRC6 3674 aaKnown RBP14.75□□□□□ -0.05
SKA1-202ENST00000398452 MYO16Q9Y6X6 1858 aa14.74□□□□□ -0.05
SKA1-202ENST00000398452 CLUHO75153 1309 aa14.74□□□□□ -0.05
SKA1-202ENST00000398452 A0A1W2PRU2 124 aa14.74□□□□□ -0.05
SKA1-202ENST00000398452 PGRMC1O00264 195 aaKnown RBP14.74□□□□□ -0.05
SKA1-202ENST00000398452 DAPK3O43293 454 aa14.74□□□□□ -0.05
SKA1-202ENST00000398452 MSI1O43347 362 aaKnown RBP14.74□□□□□ -0.05
SKA1-202ENST00000398452 SRGAP2O75044 1071 aa14.74□□□□□ -0.05
SKA1-202ENST00000398452 CKMP06732 381 aa14.74□□□□□ -0.05
SKA1-202ENST00000398452 RHOP08100 348 aa14.74□□□□□ -0.05
SKA1-202ENST00000398452 HMBSP08397 361 aa14.74□□□□□ -0.05
SKA1-202ENST00000398452 HDCP19113 662 aa14.74□□□□□ -0.05
SKA1-202ENST00000398452 TFE3P19532 575 aaPredicted RBP14.74□□□□□ -0.05
SKA1-202ENST00000398452 MARCKSL1P49006 195 aa14.74□□□□□ -0.05
SKA1-202ENST00000398452 HARS2P49590 506 aaKnown RBP14.74□□□□□ -0.05
SKA1-202ENST00000398452 CXCR3P49682 368 aa14.74□□□□□ -0.05
SKA1-202ENST00000398452 PEX5P50542 639 aa14.74□□□□□ -0.05
SKA1-202ENST00000398452 PITX1P78337 314 aaPredicted RBP14.74□□□□□ -0.05
SKA1-202ENST00000398452 ZNF211Q13398 564 aaPredicted RBP14.74□□□□□ -0.05
SKA1-202ENST00000398452 LONRF2Q1L5Z9 754 aa14.74□□□□□ -0.05
SKA1-202ENST00000398452 PPP6R3Q5H9R7 873 aaPredicted RBP14.74□□□□□ -0.05
SKA1-202ENST00000398452 CES5AQ6NT32 575 aa14.74□□□□□ -0.05
SKA1-202ENST00000398452 TMC5Q6UXY8 1006 aa14.74□□□□□ -0.05
SKA1-202ENST00000398452 GRASPQ7Z6J2 395 aaPredicted RBP14.74□□□□□ -0.05
SKA1-202ENST00000398452 CMASQ8NFW8 434 aaPredicted RBP14.74□□□□□ -0.05
SKA1-202ENST00000398452 PLD4Q96BZ4 506 aa14.74□□□□□ -0.05
SKA1-202ENST00000398452 EPAS1Q99814 870 aa14.74□□□□□ -0.05
SKA1-202ENST00000398452 DDX50Q9BQ39 737 aaKnown RBP14.74□□□□□ -0.05
SKA1-202ENST00000398452 KLHL11Q9NVR0 708 aa14.74□□□□□ -0.05
SKA1-202ENST00000398452 RAPGEFL1Q9UHV5 662 aa14.74□□□□□ -0.05
SKA1-202ENST00000398452 LSM7Q9UK45 103 aaKnown RBP14.74□□□□□ -0.05
SKA1-202ENST00000398452 FZD10Q9ULW2 581 aa14.74□□□□□ -0.05
SKA1-202ENST00000398452 MRPS23Q9Y3D9 190 aaKnown RBP14.74□□□□□ -0.05
SKA1-202ENST00000398452 SOBPA7XYQ1 873 aa14.73□□□□□ -0.05
SKA1-202ENST00000398452 H3BRJ5 948 aa14.73□□□□□ -0.05
SKA1-202ENST00000398452 COCHO43405 550 aa14.73□□□□□ -0.05
SKA1-202ENST00000398452 TBX18O95935 607 aa14.73□□□□□ -0.05
SKA1-202ENST00000398452 MOCS2O96007 188 aaPredicted RBP14.73□□□□□ -0.05
SKA1-202ENST00000398452 PYGMP11217 842 aa14.73□□□□□ -0.05
SKA1-202ENST00000398452 HOXB8P17481 243 aaPredicted RBP14.73□□□□□ -0.05
SKA1-202ENST00000398452 KCNA5P22460 613 aa14.73□□□□□ -0.05
SKA1-202ENST00000398452 KDELR1P24390 212 aa14.73□□□□□ -0.05
SKA1-202ENST00000398452 IL1R2P27930 398 aa14.73□□□□□ -0.05
SKA1-202ENST00000398452 ADRA1BP35368 520 aa14.73□□□□□ -0.05
SKA1-202ENST00000398452 AVPR1AP37288 418 aa14.73□□□□□ -0.05
SKA1-202ENST00000398452 ATXN1P54253 815 aaKnown RBP14.73□□□□□ -0.05
SKA1-202ENST00000398452 CYP4F8P98187 520 aa14.73□□□□□ -0.05
SKA1-202ENST00000398452 AMPD2Q01433 879 aa14.73□□□□□ -0.05
SKA1-202ENST00000398452 RING1Q06587 406 aa14.73□□□□□ -0.05
SKA1-202ENST00000398452 ZC3H12AQ5D1E8 599 aaKnown RBP14.73□□□□□ -0.05
SKA1-202ENST00000398452 TFDP3Q5H9I0 405 aa14.73□□□□□ -0.05
SKA1-202ENST00000398452 RARS2Q5T160 578 aaKnown RBP14.73□□□□□ -0.05
SKA1-202ENST00000398452 GPR158Q5T848 1215 aa14.73□□□□□ -0.05
SKA1-202ENST00000398452 LRRC31Q6UY01 552 aa14.73□□□□□ -0.05
SKA1-202ENST00000398452 DDX42Q86XP3 938 aaKnown RBP eCLIP14.73□□□□□ -0.05
SKA1-202ENST00000398452 RFX6Q8HWS3 928 aa14.73□□□□□ -0.05
SKA1-202ENST00000398452 TMC8Q8IU68 726 aa14.73□□□□□ -0.05
SKA1-202ENST00000398452 ARFGAP1Q8N6T3 406 aa14.73□□□□□ -0.05
SKA1-202ENST00000398452 ACTRT1Q8TDG2 376 aa14.73□□□□□ -0.05
SKA1-202ENST00000398452 ALG3Q92685 438 aa14.73□□□□□ -0.05
SKA1-202ENST00000398452 DCLK3Q9C098 648 aa14.73□□□□□ -0.05
SKA1-202ENST00000398452 IL21Q9HBE4 155 aa14.73□□□□□ -0.05
SKA1-202ENST00000398452 DNMT3BQ9UBC3 853 aaKnown RBP14.73□□□□□ -0.05
SKA1-202ENST00000398452 MRFAP1Q9Y605 127 aa14.73□□□□□ -0.05
SKA1-202ENST00000398452 PLXNA3P51805 1871 aa14.72□□□□□ -0.05
SKA1-202ENST00000398452 CTAGE15A4D2H0 777 aa14.72□□□□□ -0.05
SKA1-202ENST00000398452 PI4K2BG5E9Z4 385 aa14.72□□□□□ -0.05
SKA1-202ENST00000398452 CREB3O43889 395 aa14.72□□□□□ -0.05
SKA1-202ENST00000398452 TJP3O95049 919 aa14.72□□□□□ -0.05
SKA1-202ENST00000398452 OAS1P00973 400 aaKnown RBP14.72□□□□□ -0.05
SKA1-202ENST00000398452 IGLV3-25P01717 112 aa14.72□□□□□ -0.05
SKA1-202ENST00000398452 FGGP02679 453 aa14.72□□□□□ -0.05
SKA1-202ENST00000398452 CTAGE8P0CG41 777 aa14.72□□□□□ -0.05
SKA1-202ENST00000398452 TCF4P15884 667 aa14.72□□□□□ -0.05
SKA1-202ENST00000398452 SLC11A2P49281 568 aa14.72□□□□□ -0.05
SKA1-202ENST00000398452 PGFP49763 221 aa14.72□□□□□ -0.05
SKA1-202ENST00000398452 EPHA5P54756 1037 aa14.72□□□□□ -0.05
SKA1-202ENST00000398452 HYAL1Q12794 435 aa14.72□□□□□ -0.05
SKA1-202ENST00000398452 TFDP2Q14188 446 aa14.72□□□□□ -0.05
SKA1-202ENST00000398452 ATP13A4Q4VNC1 1196 aa14.72□□□□□ -0.05
SKA1-202ENST00000398452 ATAT1Q5SQI0 421 aa14.72□□□□□ -0.05
SKA1-202ENST00000398452 KAZNQ674X7 775 aa14.72□□□□□ -0.05
SKA1-202ENST00000398452 TXNDC8Q6A555 127 aa14.72□□□□□ -0.05
SKA1-202ENST00000398452 CCDC70Q6NSX1 233 aa14.72□□□□□ -0.05
SKA1-202ENST00000398452 ANKRD54Q6NXT1 300 aa14.72□□□□□ -0.05
SKA1-202ENST00000398452 TMEM184AQ6ZMB5 413 aa14.72□□□□□ -0.05
SKA1-202ENST00000398452 SPOCD1Q6ZMY3 1216 aa14.72□□□□□ -0.05
SKA1-202ENST00000398452 BNIPLQ7Z465 357 aa14.72□□□□□ -0.05
SKA1-202ENST00000398452 CTAGE6Q86UF2 777 aa14.72□□□□□ -0.05
SKA1-202ENST00000398452 CTAGE4Q8IX94 777 aa14.72□□□□□ -0.05
SKA1-202ENST00000398452 CCDC185Q8N715 623 aa14.72□□□□□ -0.05
SKA1-202ENST00000398452 C12orf76Q8N812 135 aaPredicted RBP14.72□□□□□ -0.05
SKA1-202ENST00000398452 MAB21L3Q8N8X9 362 aa14.72□□□□□ -0.05
SKA1-202ENST00000398452 COG1Q8WTW3 980 aa14.72□□□□□ -0.05
SKA1-202ENST00000398452 ACSF2Q96CM8 615 aaPredicted RBP14.72□□□□□ -0.05
SKA1-202ENST00000398452 RPGRIP1Q96KN7 1286 aa14.72□□□□□ -0.05
SKA1-202ENST00000398452 HAPLN3Q96S86 360 aa14.72□□□□□ -0.05
SKA1-202ENST00000398452 PEBP4Q96S96 227 aa14.72□□□□□ -0.05
SKA1-202ENST00000398452 OSBPL8Q9BZF1 889 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms