RNA–Protein interactions for RNA: ENST00000393773.7

CHMP3-202, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-202ENST00000393773 HOXD9P28356 352 aaPredicted RBP16.1■□□□□ 0.17
CHMP3-202ENST00000393773 VAMP7P51809 220 aa16.1■□□□□ 0.17
CHMP3-202ENST00000393773 PPP3CAQ08209 521 aa16.1■□□□□ 0.17
CHMP3-202ENST00000393773 CAMK2GQ13555 558 aaPredicted RBP16.1■□□□□ 0.17
CHMP3-202ENST00000393773 RAB41Q5JT25 222 aa16.1■□□□□ 0.17
CHMP3-202ENST00000393773 SERPINA13PQ6UXR4 307 aa16.1■□□□□ 0.17
CHMP3-202ENST00000393773 BHLHA9Q7RTU4 235 aa16.1■□□□□ 0.17
CHMP3-202ENST00000393773 FAM124AQ86V42 546 aa16.1■□□□□ 0.17
CHMP3-202ENST00000393773 OR2T3Q8NH03 318 aa16.1■□□□□ 0.17
CHMP3-202ENST00000393773 BBC3Q96PG8 261 aaPredicted RBP16.1■□□□□ 0.17
CHMP3-202ENST00000393773 SLC2A11Q9BYW1 496 aa16.1■□□□□ 0.17
CHMP3-202ENST00000393773 C6orf106Q9H6K1 298 aaPredicted RBP16.1■□□□□ 0.17
CHMP3-202ENST00000393773 FAM13BQ9NYF5 915 aa16.1■□□□□ 0.17
CHMP3-202ENST00000393773 MARCH2Q9P0N8 246 aa16.1■□□□□ 0.17
CHMP3-202ENST00000393773 ZBTB32Q9Y2Y4 487 aaPredicted RBP16.1■□□□□ 0.17
CHMP3-202ENST00000393773 KIF20AO95235 890 aa16.09■□□□□ 0.17
CHMP3-202ENST00000393773 ACADMP11310 421 aa16.09■□□□□ 0.17
CHMP3-202ENST00000393773 HLA-EP13747 358 aa16.09■□□□□ 0.17
CHMP3-202ENST00000393773 ACSL1P33121 698 aa16.09■□□□□ 0.17
CHMP3-202ENST00000393773 ME1P48163 572 aa16.09■□□□□ 0.17
CHMP3-202ENST00000393773 GCLMP48507 274 aa16.09■□□□□ 0.17
CHMP3-202ENST00000393773 CSNK1EP49674 416 aaKnown RBP16.09■□□□□ 0.17
CHMP3-202ENST00000393773 AFF3P51826 1226 aaKnown RBP16.09■□□□□ 0.17
CHMP3-202ENST00000393773 KIF19Q2TAC6 998 aa16.09■□□□□ 0.17
CHMP3-202ENST00000393773 MARCH9Q86YJ5 346 aa16.09■□□□□ 0.17
CHMP3-202ENST00000393773 CEP57L1Q8IYX8 460 aa16.09■□□□□ 0.17
CHMP3-202ENST00000393773 SNX19Q92543 992 aa16.09■□□□□ 0.17
CHMP3-202ENST00000393773 PLD4Q96BZ4 506 aa16.09■□□□□ 0.17
CHMP3-202ENST00000393773 PAGE5Q96GU1 130 aa16.09■□□□□ 0.17
CHMP3-202ENST00000393773 CDC6Q99741 560 aa16.09■□□□□ 0.17
CHMP3-202ENST00000393773 TMEM245Q9H330 911 aa16.09■□□□□ 0.17
CHMP3-202ENST00000393773 TRAF3IP3Q9Y228 551 aa16.09■□□□□ 0.17
CHMP3-202ENST00000393773 FRMD4BQ9Y2L6 1034 aa16.09■□□□□ 0.17
CHMP3-202ENST00000393773 CFAP46Q8IYW2 2715 aa16.08■□□□□ 0.16
CHMP3-202ENST00000393773 SLC12A8A0AV02 714 aa16.08■□□□□ 0.16
CHMP3-202ENST00000393773 CYBBP04839 570 aa16.08■□□□□ 0.16
CHMP3-202ENST00000393773 HLA-FP30511 346 aa16.08■□□□□ 0.16
CHMP3-202ENST00000393773 GRIA4P48058 902 aa16.08■□□□□ 0.16
CHMP3-202ENST00000393773 YWHAGP61981 247 aaKnown RBP eCLIP16.08■□□□□ 0.16
CHMP3-202ENST00000393773 CAMK2BQ13554 666 aa16.08■□□□□ 0.16
CHMP3-202ENST00000393773 E2F5Q15329 346 aa16.08■□□□□ 0.16
CHMP3-202ENST00000393773 TRIP4Q15650 581 aaPredicted RBP16.08■□□□□ 0.16
CHMP3-202ENST00000393773 NFIL3Q16649 462 aa16.08■□□□□ 0.16
CHMP3-202ENST00000393773 FOXD4L6Q3SYB3 417 aaPredicted RBP16.08■□□□□ 0.16
CHMP3-202ENST00000393773 ZNF394Q53GI3 561 aa16.08■□□□□ 0.16
CHMP3-202ENST00000393773 FOXD4L5Q5VV16 416 aaPredicted RBP16.08■□□□□ 0.16
CHMP3-202ENST00000393773 LAYNQ6UX15 382 aa16.08■□□□□ 0.16
CHMP3-202ENST00000393773 FOXD4L3Q6VB84 417 aaPredicted RBP16.08■□□□□ 0.16
CHMP3-202ENST00000393773 PIGZQ86VD9 579 aa16.08■□□□□ 0.16
CHMP3-202ENST00000393773 DDI1Q8WTU0 396 aa16.08■□□□□ 0.16
CHMP3-202ENST00000393773 HNRNPLLQ8WVV9 542 aaKnown RBP16.08■□□□□ 0.16
CHMP3-202ENST00000393773 FOXD4L4Q8WXT5 416 aaPredicted RBP16.08■□□□□ 0.16
CHMP3-202ENST00000393773 LHX5Q9H2C1 402 aa16.08■□□□□ 0.16
CHMP3-202ENST00000393773 TM9SF3Q9HD45 589 aa16.08■□□□□ 0.16
CHMP3-202ENST00000393773 OSGEPQ9NPF4 335 aa16.08■□□□□ 0.16
CHMP3-202ENST00000393773 ASH1LQ9NR48 2969 aaKnown RBP16.08■□□□□ 0.16
CHMP3-202ENST00000393773 SNX11Q9Y5W9 270 aa16.08■□□□□ 0.16
CHMP3-202ENST00000393773 SHROOM3Q8TF72 1996 aa16.07■□□□□ 0.16
CHMP3-202ENST00000393773 CALUO43852 315 aaPredicted RBP16.07■□□□□ 0.16
CHMP3-202ENST00000393773 F13A1P00488 732 aa16.07■□□□□ 0.16
CHMP3-202ENST00000393773 PDIA4P13667 645 aaKnown RBP16.07■□□□□ 0.16
CHMP3-202ENST00000393773 NR2F2P24468 414 aa16.07■□□□□ 0.16
CHMP3-202ENST00000393773 ENPEPQ07075 957 aa16.07■□□□□ 0.16
CHMP3-202ENST00000393773 PTPRNQ16849 979 aa16.07■□□□□ 0.16
CHMP3-202ENST00000393773 INTS8Q75QN2 995 aaKnown RBP16.07■□□□□ 0.16
CHMP3-202ENST00000393773 RSRC2Q7L4I2 434 aaKnown RBP16.07■□□□□ 0.16
CHMP3-202ENST00000393773 ZC3H3Q8IXZ2 948 aaKnown RBP16.07■□□□□ 0.16
CHMP3-202ENST00000393773 ARHGAP18Q8N392 663 aa16.07■□□□□ 0.16
CHMP3-202ENST00000393773 ZNF366Q8N895 744 aa16.07■□□□□ 0.16
CHMP3-202ENST00000393773 DDX51Q8N8A6 666 aaKnown RBP eCLIP16.07■□□□□ 0.16
CHMP3-202ENST00000393773 SLC4A11Q8NBS3 891 aa16.07■□□□□ 0.16
CHMP3-202ENST00000393773 RHBDD1Q8TEB9 315 aa16.07■□□□□ 0.16
CHMP3-202ENST00000393773 ARID3AQ99856 593 aa16.07■□□□□ 0.16
CHMP3-202ENST00000393773 TMEM8AQ9HCN3 771 aa16.07■□□□□ 0.16
CHMP3-202ENST00000393773 STRIP2Q9ULQ0 834 aa16.07■□□□□ 0.16
CHMP3-202ENST00000393773 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.07■□□□□ 0.16
CHMP3-202ENST00000393773 GRK6P43250 576 aa16.06■□□□□ 0.16
CHMP3-202ENST00000393773 CCT8P50990 548 aa16.06■□□□□ 0.16
CHMP3-202ENST00000393773 RAD23BP54727 409 aa16.06■□□□□ 0.16
CHMP3-202ENST00000393773 PDE4CQ08493 712 aa16.06■□□□□ 0.16
CHMP3-202ENST00000393773 FNDC3BQ53EP0 1204 aaKnown RBP16.06■□□□□ 0.16
CHMP3-202ENST00000393773 ARHGAP17Q68EM7 881 aa16.06■□□□□ 0.16
CHMP3-202ENST00000393773 KIAA0907Q7Z7F0 614 aaPredicted RBP16.06■□□□□ 0.16
CHMP3-202ENST00000393773 ADIPOR2Q86V24 386 aa16.06■□□□□ 0.16
CHMP3-202ENST00000393773 FAM186BQ8IYM0 893 aa16.06■□□□□ 0.16
CHMP3-202ENST00000393773 GALNT15Q8N3T1 639 aa16.06■□□□□ 0.16
CHMP3-202ENST00000393773 WFIKKN2Q8TEU8 576 aa16.06■□□□□ 0.16
CHMP3-202ENST00000393773 CYB5D2Q8WUJ1 264 aa16.06■□□□□ 0.16
CHMP3-202ENST00000393773 SEMA4DQ92854 862 aa16.06■□□□□ 0.16
CHMP3-202ENST00000393773 IGSF8Q969P0 613 aa16.06■□□□□ 0.16
CHMP3-202ENST00000393773 BIRC7Q96CA5 298 aa16.06■□□□□ 0.16
CHMP3-202ENST00000393773 ORAI3Q9BRQ5 295 aa16.06■□□□□ 0.16
CHMP3-202ENST00000393773 ULBP1Q9BZM6 244 aa16.06■□□□□ 0.16
CHMP3-202ENST00000393773 UBXN6Q9BZV1 441 aa16.06■□□□□ 0.16
CHMP3-202ENST00000393773 MMRN2Q9H8L6 949 aa16.06■□□□□ 0.16
CHMP3-202ENST00000393773 STOML2Q9UJZ1 356 aa16.06■□□□□ 0.16
CHMP3-202ENST00000393773 ANKRD6Q9Y2G4 727 aa16.06■□□□□ 0.16
CHMP3-202ENST00000393773 GOLGA8CPA6NN73 597 aa16.05■□□□□ 0.16
CHMP3-202ENST00000393773 TULP2O00295 520 aa16.05■□□□□ 0.16
CHMP3-202ENST00000393773 TNFSF14O43557 240 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms