RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 NIPA2Q8N8Q9 360 aa18.27■□□□□ 0.52
SQSTM1-202ENST00000389805 C12orf29Q8N999 325 aa18.27■□□□□ 0.52
SQSTM1-202ENST00000389805 AFG1LQ8WV93 481 aa18.27■□□□□ 0.52
SQSTM1-202ENST00000389805 DGCR14Q96DF8 476 aaKnown RBP18.27■□□□□ 0.52
SQSTM1-202ENST00000389805 PDZD7Q9H5P4 517 aa18.27■□□□□ 0.52
SQSTM1-202ENST00000389805 KCNK4Q9NYG8 393 aa18.27■□□□□ 0.52
SQSTM1-202ENST00000389805 LGALS2P05162 132 aa18.27■□□□□ 0.51
SQSTM1-202ENST00000389805 HNRNPCP07910 306 aaKnown RBP eCLIP18.27■□□□□ 0.511e-6■■■□□ 15.2
SQSTM1-202ENST00000389805 KDELR1P24390 212 aa18.27■□□□□ 0.51
SQSTM1-202ENST00000389805 STIP1P31948 543 aaKnown RBP18.27■□□□□ 0.51
SQSTM1-202ENST00000389805 FOLH1Q04609 750 aa18.27■□□□□ 0.51
SQSTM1-202ENST00000389805 MMRN1Q13201 1228 aa18.27■□□□□ 0.51
SQSTM1-202ENST00000389805 RABGAP1LQ5R372 815 aa18.27■□□□□ 0.51
SQSTM1-202ENST00000389805 DRICH1Q6PGQ1 229 aaPredicted RBP18.27■□□□□ 0.51
SQSTM1-202ENST00000389805 DENND5BQ6ZUT9 1274 aa18.27■□□□□ 0.51
SQSTM1-202ENST00000389805 SLC35B2Q8TB61 432 aa18.27■□□□□ 0.51
SQSTM1-202ENST00000389805 GPAMQ9HCL2 828 aa18.27■□□□□ 0.51
SQSTM1-202ENST00000389805 GINS2Q9Y248 185 aa18.27■□□□□ 0.51
SQSTM1-202ENST00000389805 ZNF510Q9Y2H8 683 aa18.27■□□□□ 0.51
SQSTM1-202ENST00000389805 IQANK1A0A1B0GTG1 560 aa18.26■□□□□ 0.51
SQSTM1-202ENST00000389805 KLHDC10Q6PID8 442 aa18.26■□□□□ 0.51
SQSTM1-202ENST00000389805 E2F7Q96AV8 911 aa18.26■□□□□ 0.51
SQSTM1-202ENST00000389805 TMEM176AQ96HP8 235 aa18.26■□□□□ 0.51
SQSTM1-202ENST00000389805 CCDC106Q9BWC9 280 aa18.26■□□□□ 0.51
SQSTM1-202ENST00000389805 LHX5Q9H2C1 402 aa18.26■□□□□ 0.51
SQSTM1-202ENST00000389805 PPCSQ9HAB8 311 aa18.26■□□□□ 0.51
SQSTM1-202ENST00000389805 PCDH9Q9HC56 1237 aa18.26■□□□□ 0.51
SQSTM1-202ENST00000389805 DDX56Q9NY93 547 aaKnown RBP18.26■□□□□ 0.51
SQSTM1-202ENST00000389805 CNTN3Q9P232 1028 aa18.26■□□□□ 0.51
SQSTM1-202ENST00000389805 XPO7Q9UIA9 1087 aaKnown RBP18.26■□□□□ 0.51
SQSTM1-202ENST00000389805 KCNH4Q9UQ05 1017 aa18.26■□□□□ 0.51
SQSTM1-202ENST00000389805 DRG1Q9Y295 367 aaKnown RBP18.26■□□□□ 0.51
SQSTM1-202ENST00000389805 FARP1Q9Y4F1 1045 aaPredicted RBP18.26■□□□□ 0.51
SQSTM1-202ENST00000389805 PPME1Q9Y570 386 aa18.26■□□□□ 0.51
SQSTM1-202ENST00000389805 ANK1P16157 1881 aa18.26■□□□□ 0.51
SQSTM1-202ENST00000389805 SMIM31A0A1B0GVY4 71 aa18.26■□□□□ 0.51
SQSTM1-202ENST00000389805 TRIM49D1C9J1S8 452 aa18.26■□□□□ 0.51
SQSTM1-202ENST00000389805 CILPO75339 1184 aa18.26■□□□□ 0.51
SQSTM1-202ENST00000389805 AVILO75366 819 aa18.26■□□□□ 0.51
SQSTM1-202ENST00000389805 MIPP30301 263 aa18.26■□□□□ 0.51
SQSTM1-202ENST00000389805 ELK3P41970 407 aa18.26■□□□□ 0.51
SQSTM1-202ENST00000389805 TAP1Q03518 808 aa18.26■□□□□ 0.51
SQSTM1-202ENST00000389805 ILDR2Q71H61 639 aa18.26■□□□□ 0.51
SQSTM1-202ENST00000389805 UNC45BQ8IWX7 931 aa18.26■□□□□ 0.51
SQSTM1-202ENST00000389805 PPIL6Q8IXY8 311 aa18.26■□□□□ 0.51
SQSTM1-202ENST00000389805 CALN1Q9BXU9 219 aa18.26■□□□□ 0.51
SQSTM1-202ENST00000389805 WWP1Q9H0M0 922 aa18.26■□□□□ 0.51
SQSTM1-202ENST00000389805 USP29Q9HBJ7 922 aa18.26■□□□□ 0.51
SQSTM1-202ENST00000389805 BLOC1S6Q9UL45 172 aa18.26■□□□□ 0.51
SQSTM1-202ENST00000389805 SOX13Q9UN79 622 aa18.26■□□□□ 0.51
SQSTM1-202ENST00000389805 LRRC37A2A6NM11 1700 aa18.26■□□□□ 0.51
SQSTM1-202ENST00000389805 TCRBV9S1A1TA0A576 114 aa18.25■□□□□ 0.51
SQSTM1-202ENST00000389805 TOP3BO95985 862 aaKnown RBP18.25■□□□□ 0.51
SQSTM1-202ENST00000389805 SETSIPP0DME0 302 aa18.25■□□□□ 0.51
SQSTM1-202ENST00000389805 RAG1P15918 1043 aa18.25■□□□□ 0.51
SQSTM1-202ENST00000389805 RGS2P41220 211 aa18.25■□□□□ 0.51
SQSTM1-202ENST00000389805 ADCYAP1R1P41586 468 aa18.25■□□□□ 0.51
SQSTM1-202ENST00000389805 MAGEA8P43361 318 aa18.25■□□□□ 0.51
SQSTM1-202ENST00000389805 BMPR2Q13873 1038 aa18.25■□□□□ 0.51
SQSTM1-202ENST00000389805 CCNIQ14094 377 aa18.25■□□□□ 0.51
SQSTM1-202ENST00000389805 DUS1LQ6P1R4 473 aaKnown RBP18.25■□□□□ 0.51
SQSTM1-202ENST00000389805 UGT2A3Q6UWM9 527 aa18.25■□□□□ 0.51
SQSTM1-202ENST00000389805 NPNTQ6UXI9 565 aa18.25■□□□□ 0.51
SQSTM1-202ENST00000389805 EXOC8Q8IYI6 725 aa18.25■□□□□ 0.51
SQSTM1-202ENST00000389805 PPM1NQ8N819 430 aa18.25■□□□□ 0.51
SQSTM1-202ENST00000389805 KCTD6Q8NC69 237 aa18.25■□□□□ 0.51
SQSTM1-202ENST00000389805 NKD2Q969F2 451 aaPredicted RBP18.25■□□□□ 0.51
SQSTM1-202ENST00000389805 HPDLQ96IR7 371 aa18.25■□□□□ 0.51
SQSTM1-202ENST00000389805 PRMT7Q9NVM4 692 aaPredicted RBP18.25■□□□□ 0.51
SQSTM1-202ENST00000389805 APPL1Q9UKG1 709 aa18.25■□□□□ 0.51
SQSTM1-202ENST00000389805 C11orf97A0A1B0GVM6 126 aaPredicted RBP18.25■□□□□ 0.51
SQSTM1-202ENST00000389805 MED7O43513 233 aa18.25■□□□□ 0.51
SQSTM1-202ENST00000389805 CLPTM1O96005 669 aa18.25■□□□□ 0.51
SQSTM1-202ENST00000389805 PROCP04070 461 aa18.25■□□□□ 0.51
SQSTM1-202ENST00000389805 ITGAVP06756 1048 aa18.25■□□□□ 0.51
SQSTM1-202ENST00000389805 SMIM18P0DKX4 95 aa18.25■□□□□ 0.51
SQSTM1-202ENST00000389805 CYP3A5P20815 502 aa18.25■□□□□ 0.51
SQSTM1-202ENST00000389805 RPL22P35268 128 aaKnown RBP18.25■□□□□ 0.51
SQSTM1-202ENST00000389805 CDO1Q16878 200 aa18.25■□□□□ 0.51
SQSTM1-202ENST00000389805 C15orf59Q2T9L4 293 aaPredicted RBP18.25■□□□□ 0.51
SQSTM1-202ENST00000389805 NADK2Q4G0N4 442 aa18.25■□□□□ 0.51
SQSTM1-202ENST00000389805 SH2D4BQ5SQS7 431 aa18.25■□□□□ 0.51
SQSTM1-202ENST00000389805 TRNP1Q6NT89 227 aa18.25■□□□□ 0.51
SQSTM1-202ENST00000389805 METTL25Q8N6Q8 603 aa18.25■□□□□ 0.51
SQSTM1-202ENST00000389805 MIPOL1Q8TD10 442 aa18.25■□□□□ 0.51
SQSTM1-202ENST00000389805 LRRN4Q8WUT4 740 aa18.25■□□□□ 0.51
SQSTM1-202ENST00000389805 APOL6Q9BWW8 343 aa18.25■□□□□ 0.51
SQSTM1-202ENST00000389805 DNAJB4Q9UDY4 337 aa18.25■□□□□ 0.51
SQSTM1-202ENST00000389805 CEP350Q5VT06 3117 aa18.25■□□□□ 0.51
SQSTM1-202ENST00000389805 LOC100653049A0A140TA62 436 aa18.24■□□□□ 0.51
SQSTM1-202ENST00000389805 TTC36A6NLP5 189 aa18.24■□□□□ 0.51
SQSTM1-202ENST00000389805 KBTBD13C9JR72 458 aa18.24■□□□□ 0.51
SQSTM1-202ENST00000389805 ZMPSTE24O75844 475 aa18.24■□□□□ 0.51
SQSTM1-202ENST00000389805 KRT34O76011 436 aa18.24■□□□□ 0.51
SQSTM1-202ENST00000389805 IL18RAPO95256 599 aa18.24■□□□□ 0.51
SQSTM1-202ENST00000389805 TFAP2AP05549 437 aa18.24■□□□□ 0.51
SQSTM1-202ENST00000389805 CPOXP36551 454 aa18.24■□□□□ 0.51
SQSTM1-202ENST00000389805 GPD2P43304 727 aa18.24■□□□□ 0.51
SQSTM1-202ENST00000389805 PHKA2P46019 1235 aa18.24■□□□□ 0.51
SQSTM1-202ENST00000389805 SLC26A2P50443 739 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms