RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 BYSLQ13895 437 aaKnown RBP27.78■■■□□ 2.04
MSX1-201ENST00000382723 SLC9A4Q6AI14 798 aa27.78■■■□□ 2.04
MSX1-201ENST00000382723 WDR93Q6P2C0 686 aa27.78■■■□□ 2.04
MSX1-201ENST00000382723 PLD5Q8N7P1 536 aa27.78■■■□□ 2.04
MSX1-201ENST00000382723 NACA2Q9H009 215 aa27.78■■■□□ 2.04
MSX1-201ENST00000382723 OR12D3Q9UGF7 316 aa27.78■■■□□ 2.04
MSX1-201ENST00000382723 RAB21Q9UL25 225 aa27.78■■■□□ 2.04
MSX1-201ENST00000382723 ZNF638Q14966 1978 aaKnown RBP27.78■■■□□ 2.04
MSX1-201ENST00000382723 RANBP2P49792 3224 aaKnown RBP27.77■■■□□ 2.04
MSX1-201ENST00000382723 SLC12A8A0AV02 714 aa27.77■■■□□ 2.04
MSX1-201ENST00000382723 H3BNC9 293 aa27.77■■■□□ 2.04
MSX1-201ENST00000382723 ECEL1O95672 775 aa27.77■■■□□ 2.04
MSX1-201ENST00000382723 PPP2R5DQ14738 602 aa27.77■■■□□ 2.04
MSX1-201ENST00000382723 P3H4Q92791 437 aa27.77■■■□□ 2.04
MSX1-201ENST00000382723 TRIM31Q9BZY9 425 aa27.77■■■□□ 2.04
MSX1-201ENST00000382723 ZNF334Q9HCZ1 680 aaPredicted RBP27.77■■■□□ 2.04
MSX1-201ENST00000382723 RCOR3Q9P2K3 495 aaPredicted RBP27.77■■■□□ 2.04
MSX1-201ENST00000382723 UXTQ9UBK9 157 aaPredicted RBP27.77■■■□□ 2.04
MSX1-201ENST00000382723 HEY1Q9Y5J3 304 aa27.77■■■□□ 2.04
MSX1-201ENST00000382723 DAPK3O43293 454 aa27.77■■■□□ 2.04
MSX1-201ENST00000382723 PAGE1O75459 146 aa27.77■■■□□ 2.04
MSX1-201ENST00000382723 SNX30Q5VWJ9 437 aa27.77■■■□□ 2.04
MSX1-201ENST00000382723 FBXO38Q6PIJ6 1188 aa27.77■■■□□ 2.04
MSX1-201ENST00000382723 ATL2Q8NHH9 583 aa27.77■■■□□ 2.04
MSX1-201ENST00000382723 FCRL2Q96LA5 508 aaPredicted RBP27.77■■■□□ 2.04
MSX1-201ENST00000382723 ARHGEF4Q9NR80 690 aa27.77■■■□□ 2.04
MSX1-201ENST00000382723 ZNF148Q9UQR1 794 aa27.77■■■□□ 2.04
MSX1-201ENST00000382723 UTP11Q9Y3A2 253 aaKnown RBP27.77■■■□□ 2.04
MSX1-201ENST00000382723 GBF1Q92538 1859 aa27.76■■■□□ 2.03
MSX1-201ENST00000382723 CHD9Q3L8U1 2897 aa27.76■■■□□ 2.03
MSX1-201ENST00000382723 CEP290O15078 2479 aa27.76■■■□□ 2.03
MSX1-201ENST00000382723 FAM187AA6NFU0 413 aa27.76■■■□□ 2.03
MSX1-201ENST00000382723 ATP5C1P36542 298 aaKnown RBP27.76■■■□□ 2.03
MSX1-201ENST00000382723 SEMA3BQ13214 749 aa27.76■■■□□ 2.03
MSX1-201ENST00000382723 TRADDQ15628 312 aa27.76■■■□□ 2.03
MSX1-201ENST00000382723 TRIP4Q15650 581 aaPredicted RBP27.76■■■□□ 2.03
MSX1-201ENST00000382723 HECTD3Q5T447 861 aa27.76■■■□□ 2.03
MSX1-201ENST00000382723 RFX8Q6ZV50 586 aa27.76■■■□□ 2.03
MSX1-201ENST00000382723 IFT20Q8IY31 132 aa27.76■■■□□ 2.03
MSX1-201ENST00000382723 SLC39A13Q96H72 371 aa27.76■■■□□ 2.03
MSX1-201ENST00000382723 CDK5RAP1Q96SZ6 601 aaKnown RBP27.76■■■□□ 2.03
MSX1-201ENST00000382723 ETNK2Q9NVF9 386 aa27.76■■■□□ 2.03
MSX1-201ENST00000382723 XPO7Q9UIA9 1087 aaKnown RBP27.76■■■□□ 2.03
MSX1-201ENST00000382723 MSRAQ9UJ68 235 aa27.76■■■□□ 2.03
MSX1-201ENST00000382723 MFHAS1Q9Y4C4 1052 aa27.76■■■□□ 2.03
MSX1-201ENST00000382723 CHD7Q9P2D1 2997 aa27.75■■■□□ 2.03
MSX1-201ENST00000382723 KCNU1A8MYU2 1149 aa27.75■■■□□ 2.03
MSX1-201ENST00000382723 MAP3K6O95382 1288 aa27.75■■■□□ 2.03
MSX1-201ENST00000382723 TGM2P21980 687 aa27.75■■■□□ 2.03
MSX1-201ENST00000382723 VCPP55072 806 aaKnown RBP27.75■■■□□ 2.03
MSX1-201ENST00000382723 TPI1P60174 286 aa27.75■■■□□ 2.03
MSX1-201ENST00000382723 PPP1R7Q15435 360 aa27.75■■■□□ 2.03
MSX1-201ENST00000382723 PPP2R2DQ66LE6 453 aa27.75■■■□□ 2.03
MSX1-201ENST00000382723 TADA2BQ86TJ2 420 aa27.75■■■□□ 2.03
MSX1-201ENST00000382723 GRK7Q8WTQ7 553 aa27.75■■■□□ 2.03
MSX1-201ENST00000382723 IFT81Q8WYA0 676 aa27.75■■■□□ 2.03
MSX1-201ENST00000382723 ARNTL2Q8WYA1 636 aa27.75■■■□□ 2.03
MSX1-201ENST00000382723 HAPLN3Q96S86 360 aa27.75■■■□□ 2.03
MSX1-201ENST00000382723 DNMT3LQ9UJW3 386 aa27.75■■■□□ 2.03
MSX1-201ENST00000382723 ASB3Q9Y575 518 aa27.75■■■□□ 2.03
MSX1-201ENST00000382723 TUBBP07437 444 aa27.75■■■□□ 2.03
MSX1-201ENST00000382723 MCM3P25205 808 aa27.75■■■□□ 2.03
MSX1-201ENST00000382723 EIF3EP60228 445 aaKnown RBP27.75■■■□□ 2.03
MSX1-201ENST00000382723 GSTA5Q7RTV2 222 aa27.75■■■□□ 2.03
MSX1-201ENST00000382723 SLC35B2Q8TB61 432 aa27.75■■■□□ 2.03
MSX1-201ENST00000382723 SLC22A17Q8WUG5 538 aa27.75■■■□□ 2.03
MSX1-201ENST00000382723 CASKIN2Q8WXE0 1202 aa27.75■■■□□ 2.03
MSX1-201ENST00000382723 EPAS1Q99814 870 aa27.75■■■□□ 2.03
MSX1-201ENST00000382723 DPH5Q9H2P9 285 aa27.75■■■□□ 2.03
MSX1-201ENST00000382723 C10orf88Q9H8K7 445 aa27.75■■■□□ 2.03
MSX1-201ENST00000382723 GDF3Q9NR23 364 aa27.75■■■□□ 2.03
MSX1-201ENST00000382723 FEZ2Q9UHY8 353 aaPredicted RBP27.75■■■□□ 2.03
MSX1-201ENST00000382723 PER2O15055 1255 aa27.74■■■□□ 2.03
MSX1-201ENST00000382723 CCL16O15467 120 aa27.74■■■□□ 2.03
MSX1-201ENST00000382723 COCHO43405 550 aa27.74■■■□□ 2.03
MSX1-201ENST00000382723 SRGAP2BP0DMP2 458 aa27.74■■■□□ 2.03
MSX1-201ENST00000382723 SLC2A3P11169 496 aa27.74■■■□□ 2.03
MSX1-201ENST00000382723 H2AFXP16104 143 aaPredicted RBP27.74■■■□□ 2.03
MSX1-201ENST00000382723 ZFXP17010 805 aaPredicted RBP27.74■■■□□ 2.03
MSX1-201ENST00000382723 NNTQ13423 1086 aa27.74■■■□□ 2.03
MSX1-201ENST00000382723 PPM1LQ5SGD2 360 aa27.74■■■□□ 2.03
MSX1-201ENST00000382723 DRICH1Q6PGQ1 229 aaPredicted RBP27.74■■■□□ 2.03
MSX1-201ENST00000382723 B4GALNT4Q76KP1 1039 aa27.74■■■□□ 2.03
MSX1-201ENST00000382723 TMEM150AQ86TG1 271 aa27.74■■■□□ 2.03
MSX1-201ENST00000382723 GSPT2Q8IYD1 628 aaKnown RBP27.74■■■□□ 2.03
MSX1-201ENST00000382723 ELMOD1Q8N336 334 aa27.74■■■□□ 2.03
MSX1-201ENST00000382723 RUBCNQ92622 972 aa27.74■■■□□ 2.03
MSX1-201ENST00000382723 ERP44Q9BS26 406 aa27.74■■■□□ 2.03
MSX1-201ENST00000382723 FRMD8P1Q9BZ68 369 aaPredicted RBP27.74■■■□□ 2.03
MSX1-201ENST00000382723 RAB17Q9H0T7 212 aa27.74■■■□□ 2.03
MSX1-201ENST00000382723 OSBPL2Q9H1P3 480 aa27.74■■■□□ 2.03
MSX1-201ENST00000382723 ARGLU1Q9NWB6 273 aaPredicted RBP27.74■■■□□ 2.03
MSX1-201ENST00000382723 C2orf78A6NCI8 922 aa27.73■■■□□ 2.03
MSX1-201ENST00000382723 MCF2LO15068 1137 aa27.73■■■□□ 2.03
MSX1-201ENST00000382723 CLASP2O75122 1294 aaKnown RBP27.73■■■□□ 2.03
MSX1-201ENST00000382723 APOEP02649 317 aa27.73■■■□□ 2.03
MSX1-201ENST00000382723 DPYSQ14117 519 aa27.73■■■□□ 2.03
MSX1-201ENST00000382723 TRIP13Q15645 432 aaPredicted RBP27.73■■■□□ 2.03
MSX1-201ENST00000382723 NCBP2-AS2Q69YL0 99 aa27.73■■■□□ 2.03
MSX1-201ENST00000382723 RBM23Q86U06 439 aaKnown RBP27.73■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms