RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 IFI35P80217 286 aaPredicted RBP12.89□□□□□ -0.35
CIITA-202ENST00000381835 ADCY2Q08462 1091 aa12.89□□□□□ -0.35
CIITA-202ENST00000381835 SLC25A52Q3SY17 297 aa12.89□□□□□ -0.35
CIITA-202ENST00000381835 TMC7Q7Z402 723 aa12.89□□□□□ -0.35
CIITA-202ENST00000381835 POLNQ7Z5Q5 900 aa12.89□□□□□ -0.35
CIITA-202ENST00000381835 EXD1Q8NHP7 514 aa12.89□□□□□ -0.35
CIITA-202ENST00000381835 UHMK1Q8TAS1 419 aaKnown RBP12.89□□□□□ -0.35
CIITA-202ENST00000381835 ADAM32Q8TC27 787 aa12.89□□□□□ -0.35
CIITA-202ENST00000381835 MAGEC3Q8TD91 643 aa12.89□□□□□ -0.35
CIITA-202ENST00000381835 GIPC2Q8TF65 315 aa12.89□□□□□ -0.35
CIITA-202ENST00000381835 ATXN2LQ8WWM7 1075 aaKnown RBP12.89□□□□□ -0.35
CIITA-202ENST00000381835 IRGQQ8WZA9 623 aa12.89□□□□□ -0.35
CIITA-202ENST00000381835 C17orf80Q9BSJ5 609 aa12.89□□□□□ -0.35
CIITA-202ENST00000381835 C11orf84Q9BUA3 381 aaPredicted RBP12.89□□□□□ -0.35
CIITA-202ENST00000381835 CYP4F11Q9HBI6 524 aa12.89□□□□□ -0.35
CIITA-202ENST00000381835 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.89□□□□□ -0.35
CIITA-202ENST00000381835 SAMD15Q9P1V8 674 aa12.89□□□□□ -0.35
CIITA-202ENST00000381835 MTRF1LQ9UGC7 380 aaKnown RBP12.89□□□□□ -0.35
CIITA-202ENST00000381835 CHD9Q3L8U1 2897 aa12.89□□□□□ -0.35
CIITA-202ENST00000381835 MYO9BQ13459 2157 aa12.89□□□□□ -0.35
CIITA-202ENST00000381835 M0QYT0 321 aa12.89□□□□□ -0.35
CIITA-202ENST00000381835 TEX28O15482 410 aa12.89□□□□□ -0.35
CIITA-202ENST00000381835 SEC24AO95486 1093 aa12.89□□□□□ -0.35
CIITA-202ENST00000381835 RARAP10276 462 aa12.89□□□□□ -0.35
CIITA-202ENST00000381835 CTSAP10619 480 aa12.89□□□□□ -0.35
CIITA-202ENST00000381835 EZRP15311 586 aaKnown RBP12.89□□□□□ -0.35
CIITA-202ENST00000381835 ATF2P15336 505 aa12.89□□□□□ -0.35
CIITA-202ENST00000381835 CHRNA3P32297 505 aa12.89□□□□□ -0.35
CIITA-202ENST00000381835 PTGIRP43119 386 aa12.89□□□□□ -0.35
CIITA-202ENST00000381835 PGFP49763 221 aa12.89□□□□□ -0.35
CIITA-202ENST00000381835 NME3Q13232 169 aa12.89□□□□□ -0.35
CIITA-202ENST00000381835 PPP1R7Q15435 360 aa12.89□□□□□ -0.35
CIITA-202ENST00000381835 CROCCP2Q86T23 111 aa12.89□□□□□ -0.35
CIITA-202ENST00000381835 LRRC34Q8IZ02 419 aa12.89□□□□□ -0.35
CIITA-202ENST00000381835 SCML4Q8N228 414 aa12.89□□□□□ -0.35
CIITA-202ENST00000381835 SLC7A14Q8TBB6 771 aa12.89□□□□□ -0.35
CIITA-202ENST00000381835 CENPIQ92674 756 aaPredicted RBP12.89□□□□□ -0.35
CIITA-202ENST00000381835 PRMT1Q99873 361 aaKnown RBP12.89□□□□□ -0.35
CIITA-202ENST00000381835 HEMGNQ9BXL5 484 aa12.89□□□□□ -0.35
CIITA-202ENST00000381835 ADAM7Q9H2U9 754 aa12.89□□□□□ -0.35
CIITA-202ENST00000381835 SEMA4AQ9H3S1 761 aa12.89□□□□□ -0.35
CIITA-202ENST00000381835 FBXO44Q9H4M3 255 aa12.89□□□□□ -0.35
CIITA-202ENST00000381835 DDX56Q9NY93 547 aaKnown RBP12.89□□□□□ -0.35
CIITA-202ENST00000381835 AFF4Q9UHB7 1163 aaKnown RBP12.89□□□□□ -0.35
CIITA-202ENST00000381835 TCRBV7S2A1N4TA0A589 114 aa12.88□□□□□ -0.35
CIITA-202ENST00000381835 MGRN1O60291 552 aa12.88□□□□□ -0.35
CIITA-202ENST00000381835 ABLIM3O94929 683 aa12.88□□□□□ -0.35
CIITA-202ENST00000381835 ARHGEF15O94989 841 aa12.88□□□□□ -0.35
CIITA-202ENST00000381835 AGTP01019 485 aa12.88□□□□□ -0.35
CIITA-202ENST00000381835 VIMP08670 466 aaKnown RBP12.88□□□□□ -0.35
CIITA-202ENST00000381835 ATF6P18850 670 aa12.88□□□□□ -0.35
CIITA-202ENST00000381835 SLC8A1P32418 973 aa12.88□□□□□ -0.35
CIITA-202ENST00000381835 GBP1P32455 592 aa12.88□□□□□ -0.35
CIITA-202ENST00000381835 RPL21P46778 160 aaKnown RBP12.88□□□□□ -0.35
CIITA-202ENST00000381835 TUFMP49411 452 aaKnown RBP12.88□□□□□ -0.35
CIITA-202ENST00000381835 YWHAGP61981 247 aaKnown RBP eCLIP12.88□□□□□ -0.35
CIITA-202ENST00000381835 RPL10AP62906 217 aaKnown RBP12.88□□□□□ -0.35
CIITA-202ENST00000381835 ITIH4Q14624 930 aa12.88□□□□□ -0.35
CIITA-202ENST00000381835 ANKS1BQ7Z6G8 1248 aa12.88□□□□□ -0.35
CIITA-202ENST00000381835 PIGWQ7Z7B1 504 aa12.88□□□□□ -0.35
CIITA-202ENST00000381835 SLC13A5Q86YT5 568 aaPredicted RBP12.88□□□□□ -0.35
CIITA-202ENST00000381835 RCOR2Q8IZ40 523 aa12.88□□□□□ -0.35
CIITA-202ENST00000381835 RBM41Q96IZ5 413 aaKnown RBP12.88□□□□□ -0.35
CIITA-202ENST00000381835 NPY6RQ99463 290 aa12.88□□□□□ -0.35
CIITA-202ENST00000381835 ELAC2Q9BQ52 826 aaKnown RBP12.88□□□□□ -0.35
CIITA-202ENST00000381835 GRHL1Q9NZI5 618 aa12.88□□□□□ -0.35
CIITA-202ENST00000381835 STK39Q9UEW8 545 aa12.88□□□□□ -0.35
CIITA-202ENST00000381835 MAGED2Q9UNF1 606 aaPredicted RBP12.88□□□□□ -0.35
CIITA-202ENST00000381835 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.88□□□□□ -0.35
CIITA-202ENST00000381835 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.88□□□□□ -0.35
CIITA-202ENST00000381835 CXCL14O95715 111 aa12.88□□□□□ -0.35
CIITA-202ENST00000381835 CA3P07451 260 aa12.88□□□□□ -0.35
CIITA-202ENST00000381835 CNPP09543 421 aaKnown RBP12.88□□□□□ -0.35
CIITA-202ENST00000381835 RALAP11233 206 aa12.88□□□□□ -0.35
CIITA-202ENST00000381835 ELF3P78545 371 aaPredicted RBP12.88□□□□□ -0.35
CIITA-202ENST00000381835 RAB33AQ14088 237 aa12.88□□□□□ -0.35
CIITA-202ENST00000381835 E2F5Q15329 346 aa12.88□□□□□ -0.35
CIITA-202ENST00000381835 BTBD8Q5XKL5 378 aa12.88□□□□□ -0.35
CIITA-202ENST00000381835 KAZNQ674X7 775 aa12.88□□□□□ -0.35
CIITA-202ENST00000381835 TPGS2Q68CL5 300 aa12.88□□□□□ -0.35
CIITA-202ENST00000381835 HIBCHQ6NVY1 386 aaPredicted RBP12.88□□□□□ -0.35
CIITA-202ENST00000381835 MFSD7Q6UXD7 560 aa12.88□□□□□ -0.35
CIITA-202ENST00000381835 CYP4V2Q6ZWL3 525 aaPredicted RBP12.88□□□□□ -0.35
CIITA-202ENST00000381835 STRADAQ7RTN6 431 aa12.88□□□□□ -0.35
CIITA-202ENST00000381835 FAM131BQ86XD5 332 aa12.88□□□□□ -0.35
CIITA-202ENST00000381835 PRELID2Q8N945 189 aa12.88□□□□□ -0.35
CIITA-202ENST00000381835 KCTD6Q8NC69 237 aa12.88□□□□□ -0.35
CIITA-202ENST00000381835 NT5C3BQ969T7 300 aa12.88□□□□□ -0.35
CIITA-202ENST00000381835 SLITRK1Q96PX8 696 aa12.88□□□□□ -0.35
CIITA-202ENST00000381835 TCF25Q9BQ70 676 aa12.88□□□□□ -0.35
CIITA-202ENST00000381835 HERPUD2Q9BSE4 406 aa12.88□□□□□ -0.35
CIITA-202ENST00000381835 STMN4Q9H169 189 aaPredicted RBP12.88□□□□□ -0.35
CIITA-202ENST00000381835 NMUR1Q9HB89 426 aa12.88□□□□□ -0.35
CIITA-202ENST00000381835 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.88□□□□□ -0.35
CIITA-202ENST00000381835 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.88□□□□□ -0.35
CIITA-202ENST00000381835 GPATCH2LQ9NWQ4 482 aa12.88□□□□□ -0.35
CIITA-202ENST00000381835 NUDT5Q9UKK9 219 aa12.88□□□□□ -0.35
CIITA-202ENST00000381835 SCML2Q9UQR0 700 aa12.88□□□□□ -0.35
CIITA-202ENST00000381835 A0A1W2PQH9 124 aa12.87□□□□□ -0.35
CIITA-202ENST00000381835 LILRB3O75022 631 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms