RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 PCLAFQ15004 111 aa16.34■□□□□ 0.21
CKAP4-201ENST00000378026 C15orf59Q2T9L4 293 aaPredicted RBP16.34■□□□□ 0.21
CKAP4-201ENST00000378026 PPP1R2P3Q6NXS1 205 aa16.34■□□□□ 0.21
CKAP4-201ENST00000378026 BHLHE22Q8NFJ8 381 aaPredicted RBP16.34■□□□□ 0.21
CKAP4-201ENST00000378026 SYTL5Q8TDW5 730 aaPredicted RBP16.34■□□□□ 0.21
CKAP4-201ENST00000378026 LZICQ8WZA0 190 aa16.34■□□□□ 0.21
CKAP4-201ENST00000378026 RMDN3Q96TC7 470 aa16.34■□□□□ 0.21
CKAP4-201ENST00000378026 CGRRF1Q99675 332 aa16.34■□□□□ 0.21
CKAP4-201ENST00000378026 KLC2Q9H0B6 622 aa16.34■□□□□ 0.21
CKAP4-201ENST00000378026 COG4Q9H9E3 785 aa16.34■□□□□ 0.21
CKAP4-201ENST00000378026 C6orf203Q9P0P8 240 aaPredicted RBP16.34■□□□□ 0.21
CKAP4-201ENST00000378026 CNTN6Q9UQ52 1028 aa16.34■□□□□ 0.21
CKAP4-201ENST00000378026 SSX2IPQ9Y2D8 614 aa16.34■□□□□ 0.21
CKAP4-201ENST00000378026 PCDHA10Q9Y5I2 948 aa16.34■□□□□ 0.21
CKAP4-201ENST00000378026 CEPT1Q9Y6K0 416 aa16.34■□□□□ 0.21
CKAP4-201ENST00000378026 TRDMT1O14717 391 aaKnown RBP16.34■□□□□ 0.21
CKAP4-201ENST00000378026 LSM8O95777 96 aaKnown RBP16.34■□□□□ 0.21
CKAP4-201ENST00000378026 TRUB2O95900 331 aaKnown RBP16.34■□□□□ 0.21
CKAP4-201ENST00000378026 TFPTP0C1Z6 253 aa16.34■□□□□ 0.21
CKAP4-201ENST00000378026 HOXA10P31260 410 aaPredicted RBP16.34■□□□□ 0.21
CKAP4-201ENST00000378026 GSDMBQ8TAX9 411 aa16.34■□□□□ 0.21
CKAP4-201ENST00000378026 ZSCAN18Q8TBC5 510 aaPredicted RBP16.34■□□□□ 0.21
CKAP4-201ENST00000378026 FRMD8P1Q9BZ68 369 aaPredicted RBP16.34■□□□□ 0.21
CKAP4-201ENST00000378026 CAAP1Q9H8G2 361 aa16.34■□□□□ 0.21
CKAP4-201ENST00000378026 ARHGAP28Q9P2N2 729 aa16.34■□□□□ 0.21
CKAP4-201ENST00000378026 HMGCRP04035 888 aa16.34■□□□□ 0.21
CKAP4-201ENST00000378026 ALDOAP04075 364 aaKnown RBP16.34■□□□□ 0.21
CKAP4-201ENST00000378026 SERPINE1P05121 402 aa16.34■□□□□ 0.21
CKAP4-201ENST00000378026 CDK18Q07002 472 aa16.34■□□□□ 0.21
CKAP4-201ENST00000378026 PGM5Q15124 567 aa16.34■□□□□ 0.21
CKAP4-201ENST00000378026 SNX32Q86XE0 403 aa16.34■□□□□ 0.21
CKAP4-201ENST00000378026 CDAN1Q8IWY9 1227 aa16.34■□□□□ 0.21
CKAP4-201ENST00000378026 ZNF781Q8N8C0 355 aa16.34■□□□□ 0.21
CKAP4-201ENST00000378026 WDR55Q9H6Y2 383 aaPredicted RBP16.34■□□□□ 0.21
CKAP4-201ENST00000378026 RSAD1Q9HA92 442 aa16.34■□□□□ 0.21
CKAP4-201ENST00000378026 TMEM216Q9P0N5 145 aa16.34■□□□□ 0.21
CKAP4-201ENST00000378026 RAB26Q9ULW5 256 aa16.34■□□□□ 0.21
CKAP4-201ENST00000378026 PLIN3O60664 434 aa16.33■□□□□ 0.21
CKAP4-201ENST00000378026 ERBB2P04626 1255 aa16.33■□□□□ 0.21
CKAP4-201ENST00000378026 EDN1P05305 212 aa16.33■□□□□ 0.21
CKAP4-201ENST00000378026 ATP5BP06576 529 aaKnown RBP16.33■□□□□ 0.21
CKAP4-201ENST00000378026 RALBP11234 206 aa16.33■□□□□ 0.21
CKAP4-201ENST00000378026 FGFR3P22607 806 aa16.33■□□□□ 0.21
CKAP4-201ENST00000378026 POLR2BP30876 1174 aaKnown RBP16.33■□□□□ 0.21
CKAP4-201ENST00000378026 NR1H2P55055 460 aa16.33■□□□□ 0.21
CKAP4-201ENST00000378026 CDH8P55286 799 aa16.33■□□□□ 0.21
CKAP4-201ENST00000378026 MS4A2Q01362 244 aa16.33■□□□□ 0.21
CKAP4-201ENST00000378026 ADGRE1Q14246 886 aa16.33■□□□□ 0.21
CKAP4-201ENST00000378026 C16orf72Q14CZ0 275 aa16.33■□□□□ 0.21
CKAP4-201ENST00000378026 AHI1Q8N157 1196 aa16.33■□□□□ 0.21
CKAP4-201ENST00000378026 MAPK15Q8TD08 544 aa16.33■□□□□ 0.21
CKAP4-201ENST00000378026 CLEC4DQ8WXI8 215 aa16.33■□□□□ 0.21
CKAP4-201ENST00000378026 OR52B2Q96RD2 323 aa16.33■□□□□ 0.21
CKAP4-201ENST00000378026 AFG3L2Q9Y4W6 797 aa16.33■□□□□ 0.21
CKAP4-201ENST00000378026 COL16A1Q07092 1604 aaPredicted RBP16.33■□□□□ 0.2
CKAP4-201ENST00000378026 METTL18O95568 372 aa16.33■□□□□ 0.2
CKAP4-201ENST00000378026 OSTNP61366 133 aa16.33■□□□□ 0.2
CKAP4-201ENST00000378026 TFAMQ00059 246 aaKnown RBP16.33■□□□□ 0.2
CKAP4-201ENST00000378026 KCTD21Q4G0X4 260 aa16.33■□□□□ 0.2
CKAP4-201ENST00000378026 RNF168Q8IYW5 571 aaPredicted RBP16.33■□□□□ 0.2
CKAP4-201ENST00000378026 CMASQ8NFW8 434 aaPredicted RBP16.33■□□□□ 0.2
CKAP4-201ENST00000378026 DEPTORQ8TB45 409 aa16.33■□□□□ 0.2
CKAP4-201ENST00000378026 PGLYRP2Q96PD5 576 aa16.33■□□□□ 0.2
CKAP4-201ENST00000378026 EP400Q96L91 3159 aa16.33■□□□□ 0.2
CKAP4-201ENST00000378026 WDR27A2RRH5 827 aa16.32■□□□□ 0.2
CKAP4-201ENST00000378026 CSPG5O95196 566 aa16.32■□□□□ 0.2
CKAP4-201ENST00000378026 EIF4BP23588 611 aaKnown RBP16.32■□□□□ 0.2
CKAP4-201ENST00000378026 RPL10P27635 214 aaKnown RBP16.32■□□□□ 0.2
CKAP4-201ENST00000378026 CCR3P51677 355 aa16.32■□□□□ 0.2
CKAP4-201ENST00000378026 ABCE1P61221 599 aaKnown RBP16.32■□□□□ 0.2
CKAP4-201ENST00000378026 KRT76Q01546 638 aa16.32■□□□□ 0.2
CKAP4-201ENST00000378026 TRPC3Q13507 836 aa16.32■□□□□ 0.2
CKAP4-201ENST00000378026 SLC44A4Q53GD3 710 aa16.32■□□□□ 0.2
CKAP4-201ENST00000378026 FAM102AQ5T9C2 384 aaPredicted RBP16.32■□□□□ 0.2
CKAP4-201ENST00000378026 ARHGEF16Q5VV41 709 aa16.32■□□□□ 0.2
CKAP4-201ENST00000378026 CES3Q6UWW8 571 aa16.32■□□□□ 0.2
CKAP4-201ENST00000378026 LPCAT2Q7L5N7 544 aa16.32■□□□□ 0.2
CKAP4-201ENST00000378026 DIS3LQ8TF46 1054 aaKnown RBP16.32■□□□□ 0.2
CKAP4-201ENST00000378026 MARK4Q96L34 752 aa16.32■□□□□ 0.2
CKAP4-201ENST00000378026 NLRP4Q96MN2 994 aa16.32■□□□□ 0.2
CKAP4-201ENST00000378026 DCUN1D5Q9BTE7 237 aa16.32■□□□□ 0.2
CKAP4-201ENST00000378026 ZNF696Q9H7X3 374 aa16.32■□□□□ 0.2
CKAP4-201ENST00000378026 RSL24D1Q9UHA3 163 aaKnown RBP16.32■□□□□ 0.2
CKAP4-201ENST00000378026 PSAT1Q9Y617 370 aa16.32■□□□□ 0.2
CKAP4-201ENST00000378026 DGAT1O75907 488 aa16.32■□□□□ 0.2
CKAP4-201ENST00000378026 HSPA4LO95757 839 aa16.32■□□□□ 0.2
CKAP4-201ENST00000378026 ASS1P00966 412 aaKnown RBP16.32■□□□□ 0.2
CKAP4-201ENST00000378026 ENTPD1P49961 510 aa16.32■□□□□ 0.2
CKAP4-201ENST00000378026 PSMD7P51665 324 aa16.32■□□□□ 0.2
CKAP4-201ENST00000378026 BCAR1P56945 870 aa16.32■□□□□ 0.2
CKAP4-201ENST00000378026 SFSWAPQ12872 951 aaKnown RBP16.32■□□□□ 0.2
CKAP4-201ENST00000378026 POTEAQ6S8J7 498 aa16.32■□□□□ 0.2
CKAP4-201ENST00000378026 HACE1Q8IYU2 909 aa16.32■□□□□ 0.2
CKAP4-201ENST00000378026 TSPAN14Q8NG11 270 aa16.32■□□□□ 0.2
CKAP4-201ENST00000378026 ATP2A3Q93084 1043 aa16.32■□□□□ 0.2
CKAP4-201ENST00000378026 SIGLEC10Q96LC7 697 aa16.32■□□□□ 0.2
CKAP4-201ENST00000378026 EBNA1BP2Q99848 306 aaKnown RBP16.32■□□□□ 0.2
CKAP4-201ENST00000378026 CYP26B1Q9NR63 512 aa16.32■□□□□ 0.2
CKAP4-201ENST00000378026 STK39Q9UEW8 545 aa16.32■□□□□ 0.2
CKAP4-201ENST00000378026 SCAF8Q9UPN6 1271 aaKnown RBP16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms