RNA–Protein interactions for RNA: ENST00000366216.6

CSNK1E-202, Transcript of casein kinase 1 epsilon, humanhuman

TSL 2

Gene CSNK1E, Length 1,005 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSNK1E-202ENST00000366216 RSRC2Q7L4I2 434 aaKnown RBP11.78□□□□□ -0.52
CSNK1E-202ENST00000366216 DPH6Q7L8W6 267 aa11.78□□□□□ -0.52
CSNK1E-202ENST00000366216 ZNF572Q7Z3I7 529 aaPredicted RBP11.78□□□□□ -0.52
CSNK1E-202ENST00000366216 LIMS2Q7Z4I7 341 aa11.78□□□□□ -0.52
CSNK1E-202ENST00000366216 TMC8Q8IU68 726 aa11.78□□□□□ -0.52
CSNK1E-202ENST00000366216 CREG2Q8IUH2 290 aa11.78□□□□□ -0.52
CSNK1E-202ENST00000366216 LRRN4CLQ8ND94 238 aa11.78□□□□□ -0.52
CSNK1E-202ENST00000366216 ZNF564Q8TBZ8 553 aaPredicted RBP11.78□□□□□ -0.52
CSNK1E-202ENST00000366216 CPA5Q8WXQ8 436 aa11.78□□□□□ -0.52
CSNK1E-202ENST00000366216 TFAP2BQ92481 460 aa11.78□□□□□ -0.52
CSNK1E-202ENST00000366216 UBXN4Q92575 508 aa11.78□□□□□ -0.52
CSNK1E-202ENST00000366216 GOLGA1Q92805 767 aa11.78□□□□□ -0.52
CSNK1E-202ENST00000366216 HES6Q96HZ4 224 aa11.78□□□□□ -0.52
CSNK1E-202ENST00000366216 PBKQ96KB5 322 aa11.78□□□□□ -0.52
CSNK1E-202ENST00000366216 UROC1Q96N76 676 aa11.78□□□□□ -0.52
CSNK1E-202ENST00000366216 MMS19Q96T76 1030 aa11.78□□□□□ -0.52
CSNK1E-202ENST00000366216 ZSWIM1Q9BR11 485 aa11.78□□□□□ -0.52
CSNK1E-202ENST00000366216 NUP85Q9BW27 656 aa11.78□□□□□ -0.52
CSNK1E-202ENST00000366216 NT5C1AQ9BXI3 368 aa11.78□□□□□ -0.52
CSNK1E-202ENST00000366216 ADAM22Q9P0K1 906 aa11.78□□□□□ -0.52
CSNK1E-202ENST00000366216 AMFRQ9UKV5 643 aa11.78□□□□□ -0.52
CSNK1E-202ENST00000366216 SNX9Q9Y5X1 595 aa11.78□□□□□ -0.52
CSNK1E-202ENST00000366216 KNL1Q8NG31 2342 aa11.78□□□□□ -0.52
CSNK1E-202ENST00000366216 TSC2P49815 1807 aa11.78□□□□□ -0.52
CSNK1E-202ENST00000366216 GOLGA4Q13439 2230 aaKnown RBP11.78□□□□□ -0.52
CSNK1E-202ENST00000366216 MYOFQ9NZM1 2061 aa11.77□□□□□ -0.52
CSNK1E-202ENST00000366216 KPNA7A9QM74 516 aa11.77□□□□□ -0.53
CSNK1E-202ENST00000366216 DCLK1O15075 740 aa11.77□□□□□ -0.53
CSNK1E-202ENST00000366216 CALB1P05937 261 aa11.77□□□□□ -0.53
CSNK1E-202ENST00000366216 CD19P15391 556 aa11.77□□□□□ -0.53
CSNK1E-202ENST00000366216 MMP8P22894 467 aa11.77□□□□□ -0.53
CSNK1E-202ENST00000366216 NDST1P52848 882 aa11.77□□□□□ -0.53
CSNK1E-202ENST00000366216 COL28A1Q2UY09 1125 aa11.77□□□□□ -0.53
CSNK1E-202ENST00000366216 UAP1L1Q3KQV9 507 aa11.77□□□□□ -0.53
CSNK1E-202ENST00000366216 PLEKHA7Q6IQ23 1121 aa11.77□□□□□ -0.53
CSNK1E-202ENST00000366216 ARID3BQ8IVW6 561 aaPredicted RBP11.77□□□□□ -0.53
CSNK1E-202ENST00000366216 COG1Q8WTW3 980 aa11.77□□□□□ -0.53
CSNK1E-202ENST00000366216 HHIPQ96QV1 700 aa11.77□□□□□ -0.53
CSNK1E-202ENST00000366216 TWNKQ96RR1 684 aa11.77□□□□□ -0.53
CSNK1E-202ENST00000366216 TMEM209Q96SK2 561 aa11.77□□□□□ -0.53
CSNK1E-202ENST00000366216 DNAI2Q9GZS0 605 aa11.77□□□□□ -0.53
CSNK1E-202ENST00000366216 MRPL47Q9HD33 250 aaKnown RBP11.77□□□□□ -0.53
CSNK1E-202ENST00000366216 SCINQ9Y6U3 715 aa11.77□□□□□ -0.53
CSNK1E-202ENST00000366216 PCDH15Q96QU1 1955 aa11.77□□□□□ -0.53
CSNK1E-202ENST00000366216 CFAP46Q8IYW2 2715 aa11.77□□□□□ -0.53
CSNK1E-202ENST00000366216 A0A1W2PRU2 124 aa11.76□□□□□ -0.53
CSNK1E-202ENST00000366216 OTOL1A6NHN0 477 aaPredicted RBP11.76□□□□□ -0.53
CSNK1E-202ENST00000366216 MIF4GDA9UHW6 222 aaKnown RBP11.76□□□□□ -0.53
CSNK1E-202ENST00000366216 H7C4K7 107 aa11.76□□□□□ -0.53
CSNK1E-202ENST00000366216 O00370 1275 aa11.76□□□□□ -0.53
CSNK1E-202ENST00000366216 DPYSL4O14531 572 aa11.76□□□□□ -0.53
CSNK1E-202ENST00000366216 ZNF185O15231 689 aa11.76□□□□□ -0.53
CSNK1E-202ENST00000366216 PAX3P23760 479 aa11.76□□□□□ -0.53
CSNK1E-202ENST00000366216 RRM1P23921 792 aa11.76□□□□□ -0.53
CSNK1E-202ENST00000366216 GBP1P32455 592 aa11.76□□□□□ -0.53
CSNK1E-202ENST00000366216 RPL9P32969 192 aaKnown RBP11.76□□□□□ -0.53
CSNK1E-202ENST00000366216 PAFAH1B1P43034 410 aa11.76□□□□□ -0.53
CSNK1E-202ENST00000366216 GSCP56915 257 aaPredicted RBP11.76□□□□□ -0.53
CSNK1E-202ENST00000366216 GRSF1Q12849 480 aaKnown RBP eCLIP11.76□□□□□ -0.53
CSNK1E-202ENST00000366216 SOWAHAQ2M3V2 549 aa11.76□□□□□ -0.53
CSNK1E-202ENST00000366216 ITPRIPL2Q3MIP1 535 aa11.76□□□□□ -0.53
CSNK1E-202ENST00000366216 CFAP221Q4G0U5 840 aa11.76□□□□□ -0.53
CSNK1E-202ENST00000366216 SGO2Q562F6 1265 aa11.76□□□□□ -0.53
CSNK1E-202ENST00000366216 NAIF1Q69YI7 327 aaPredicted RBP11.76□□□□□ -0.53
CSNK1E-202ENST00000366216 FSTL4Q6MZW2 842 aa11.76□□□□□ -0.53
CSNK1E-202ENST00000366216 LCLAT1Q6UWP7 414 aa11.76□□□□□ -0.53
CSNK1E-202ENST00000366216 RNF19BQ6ZMZ0 732 aa11.76□□□□□ -0.53
CSNK1E-202ENST00000366216 PASD1Q8IV76 773 aa11.76□□□□□ -0.53
CSNK1E-202ENST00000366216 WDTC1Q8N5D0 677 aa11.76□□□□□ -0.53
CSNK1E-202ENST00000366216 TOP6BLQ8N6T0 577 aa11.76□□□□□ -0.53
CSNK1E-202ENST00000366216 MRPL45Q9BRJ2 306 aaKnown RBP11.76□□□□□ -0.53
CSNK1E-202ENST00000366216 C11orf70Q9BRQ4 267 aa11.76□□□□□ -0.53
CSNK1E-202ENST00000366216 SLC32A1Q9H598 525 aa11.76□□□□□ -0.53
CSNK1E-202ENST00000366216 FBRSL1Q9HCM7 1045 aaKnown RBP11.76□□□□□ -0.53
CSNK1E-202ENST00000366216 PARVAQ9NVD7 372 aa11.76□□□□□ -0.53
CSNK1E-202ENST00000366216 HMGXB4Q9UGU5 601 aa11.76□□□□□ -0.53
CSNK1E-202ENST00000366216 LCMT1Q9UIC8 334 aa11.76□□□□□ -0.53
CSNK1E-202ENST00000366216 MAFFQ9ULX9 164 aa11.76□□□□□ -0.53
CSNK1E-202ENST00000366216 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.76□□□□□ -0.53
CSNK1E-202ENST00000366216 ALG6Q9Y672 507 aa11.76□□□□□ -0.53
CSNK1E-202ENST00000366216 SPAARA0A1B0GVQ0 90 aa11.75□□□□□ -0.53
CSNK1E-202ENST00000366216 FAM221BA6H8Z2 402 aa11.75□□□□□ -0.53
CSNK1E-202ENST00000366216 ANTXRLA6NF34 631 aa11.75□□□□□ -0.53
CSNK1E-202ENST00000366216 EIF4E1BA6NMX2 242 aaKnown RBP11.75□□□□□ -0.53
CSNK1E-202ENST00000366216 PATE3B3GLJ2 98 aa11.75□□□□□ -0.53
CSNK1E-202ENST00000366216 PDE2AO00408 941 aaPredicted RBP11.75□□□□□ -0.53
CSNK1E-202ENST00000366216 DDX3YO15523 660 aaKnown RBP11.75□□□□□ -0.53
CSNK1E-202ENST00000366216 ATMINO43313 823 aaPredicted RBP11.75□□□□□ -0.53
CSNK1E-202ENST00000366216 PRAMEF12O95522 483 aa11.75□□□□□ -0.53
CSNK1E-202ENST00000366216 WARSP23381 471 aaKnown RBP11.75□□□□□ -0.53
CSNK1E-202ENST00000366216 SLC1A1P43005 524 aa11.75□□□□□ -0.53
CSNK1E-202ENST00000366216 LILRA4P59901 499 aa11.75□□□□□ -0.53
CSNK1E-202ENST00000366216 IRX4P78413 519 aa11.75□□□□□ -0.53
CSNK1E-202ENST00000366216 SIM1P81133 766 aaPredicted RBP11.75□□□□□ -0.53
CSNK1E-202ENST00000366216 ERCC6LQ2NKX8 1250 aa11.75□□□□□ -0.53
CSNK1E-202ENST00000366216 CTXN3Q4LDR2 81 aa11.75□□□□□ -0.53
CSNK1E-202ENST00000366216 TMEM196Q5HYL7 178 aa11.75□□□□□ -0.53
CSNK1E-202ENST00000366216 CCDC181Q5TID7 509 aa11.75□□□□□ -0.53
CSNK1E-202ENST00000366216 DENND1BQ6P3S1 775 aa11.75□□□□□ -0.53
CSNK1E-202ENST00000366216 MMS22LQ6ZRQ5 1243 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms