RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 LCHNA4D1U4 455 aa13.64□□□□□ -0.23
SQSTM1-201ENST00000360718 YJEFN3A6XGL0 299 aa13.64□□□□□ -0.23
SQSTM1-201ENST00000360718 E7ENQ6 273 aa13.64□□□□□ -0.23
SQSTM1-201ENST00000360718 C2CD2LO14523 706 aa13.64□□□□□ -0.23
SQSTM1-201ENST00000360718 SOAT2O75908 522 aa13.64□□□□□ -0.23
SQSTM1-201ENST00000360718 TRUB2O95900 331 aaKnown RBP13.64□□□□□ -0.23
SQSTM1-201ENST00000360718 FYNP06241 537 aa13.64□□□□□ -0.23
SQSTM1-201ENST00000360718 NOS2P35228 1153 aa13.64□□□□□ -0.23
SQSTM1-201ENST00000360718 MAGEA11P43364 429 aa13.64□□□□□ -0.23
SQSTM1-201ENST00000360718 PITX1P78337 314 aaPredicted RBP13.64□□□□□ -0.23
SQSTM1-201ENST00000360718 STAT4Q14765 748 aa13.64□□□□□ -0.23
SQSTM1-201ENST00000360718 DCAF6Q58WW2 860 aa13.64□□□□□ -0.23
SQSTM1-201ENST00000360718 UBAP2Q5T6F2 1119 aaKnown RBP13.64□□□□□ -0.23
SQSTM1-201ENST00000360718 PSRC1Q6PGN9 363 aaPredicted RBP13.64□□□□□ -0.23
SQSTM1-201ENST00000360718 ARHGEF18Q6ZSZ5 1173 aa13.64□□□□□ -0.23
SQSTM1-201ENST00000360718 CYP4V2Q6ZWL3 525 aaPredicted RBP13.64□□□□□ -0.23
SQSTM1-201ENST00000360718 DEFB106AQ8N104 65 aa13.64□□□□□ -0.23
SQSTM1-201ENST00000360718 PEBP4Q96S96 227 aa13.64□□□□□ -0.23
SQSTM1-201ENST00000360718 ZBED2Q9BTP6 218 aa13.64□□□□□ -0.23
SQSTM1-201ENST00000360718 CD248Q9HCU0 757 aa13.64□□□□□ -0.23
SQSTM1-201ENST00000360718 CDY1Q9Y6F8 540 aa13.64□□□□□ -0.23
SQSTM1-201ENST00000360718 CDH23Q9H251 3354 aa13.63□□□□□ -0.23
SQSTM1-201ENST00000360718 PLXNA4Q9HCM2 1894 aa13.63□□□□□ -0.23
SQSTM1-201ENST00000360718 TNFRSF10BO14763 440 aa13.63□□□□□ -0.23
SQSTM1-201ENST00000360718 TP73O15350 636 aa13.63□□□□□ -0.23
SQSTM1-201ENST00000360718 MGRN1O60291 552 aa13.63□□□□□ -0.23
SQSTM1-201ENST00000360718 CHKAP35790 457 aa13.63□□□□□ -0.23
SQSTM1-201ENST00000360718 PGFP49763 221 aa13.63□□□□□ -0.23
SQSTM1-201ENST00000360718 ATXN1P54253 815 aaKnown RBP13.63□□□□□ -0.23
SQSTM1-201ENST00000360718 KYNUQ16719 465 aa13.63□□□□□ -0.23
SQSTM1-201ENST00000360718 DDR2Q16832 855 aa13.63□□□□□ -0.23
SQSTM1-201ENST00000360718 SMTNL2Q2TAL5 461 aa13.63□□□□□ -0.23
SQSTM1-201ENST00000360718 SLC25A52Q3SY17 297 aa13.63□□□□□ -0.23
SQSTM1-201ENST00000360718 BOLA3Q53S33 107 aa13.63□□□□□ -0.23
SQSTM1-201ENST00000360718 TFDP3Q5H9I0 405 aa13.63□□□□□ -0.23
SQSTM1-201ENST00000360718 COL13A1Q5TAT6 717 aaPredicted RBP13.63□□□□□ -0.23
SQSTM1-201ENST00000360718 STRADAQ7RTN6 431 aa13.63□□□□□ -0.23
SQSTM1-201ENST00000360718 RELL1Q8IUW5 271 aa13.63□□□□□ -0.23
SQSTM1-201ENST00000360718 KCTD6Q8NC69 237 aa13.63□□□□□ -0.23
SQSTM1-201ENST00000360718 SPPL2BQ8TCT7 592 aa13.63□□□□□ -0.23
SQSTM1-201ENST00000360718 C2orf15Q8WU43 125 aaKnown RBP13.63□□□□□ -0.23
SQSTM1-201ENST00000360718 HERVK_113Q902F9 699 aa13.63□□□□□ -0.23
SQSTM1-201ENST00000360718 SLITRK1Q96PX8 696 aa13.63□□□□□ -0.23
SQSTM1-201ENST00000360718 C11orf84Q9BUA3 381 aaPredicted RBP13.63□□□□□ -0.23
SQSTM1-201ENST00000360718 SPG21Q9NZD8 308 aa13.63□□□□□ -0.23
SQSTM1-201ENST00000360718 WDR27A2RRH5 827 aa13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 MTMR11A4FU01 709 aa13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 TCP11X1B4DZS4 312 aa13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 PI4K2BG5E9Z4 385 aa13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 CDH16O75309 829 aa13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 TJP3O95049 919 aa13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 LTFP02788 710 aa13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 SOD2P04179 222 aa13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 RALAP11233 206 aa13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 BRAFP15056 766 aa13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 PPM1AP35813 382 aa13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 SULT1E1P49888 294 aa13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 PLXNA3P51805 1871 aa13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 GPR17Q13304 367 aa13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 PSMD5Q16401 504 aa13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 KCNT1Q5JUK3 1230 aa13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 OTUD1Q5VV17 481 aaPredicted RBP13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 SYPL2Q5VXT5 272 aa13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 PPP1R21Q6ZMI0 780 aa13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 SPOCD1Q6ZMY3 1216 aa13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 SCML4Q8N228 414 aa13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 RIBC1Q8N443 379 aaPredicted RBP13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 FBXO22Q8NEZ5 403 aa13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 CKAP2Q8WWK9 683 aa13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 AUTS2Q8WXX7 1259 aa13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 ATG4AQ8WYN0 398 aa13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 HSPH1Q92598 858 aa13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 TBCBQ99426 244 aa13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 HTATIP2Q9BUP3 242 aa13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 NKIRAS1Q9NYS0 192 aa13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 MTRRQ9UBK8 725 aa13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 LGALS13Q9UHV8 139 aa13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 SLC27A5Q9Y2P5 690 aa13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 ACTL7BQ9Y614 415 aa13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 COL4A4P53420 1690 aaPredicted RBP13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 NDC80O14777 642 aa13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 EZRP15311 586 aaKnown RBP13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 SLC5A3P53794 718 aa13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 ELF3P78545 371 aaPredicted RBP13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 TRIP13Q15645 432 aaPredicted RBP13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 PREPLQ4J6C6 727 aaPredicted RBP13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 PM20D1Q6GTS8 502 aa13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 HIBCHQ6NVY1 386 aaPredicted RBP13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 SPRED2Q7Z698 418 aa13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 HERC6Q8IVU3 1022 aa13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 MAP7D3Q8IWC1 876 aa13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 MGARPQ8TDB4 240 aa13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 GPR152Q8TDT2 470 aa13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 CENPIQ92674 756 aaPredicted RBP13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 C8orf48Q96LL4 319 aa13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 CLSTN3Q9BQT9 956 aa13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 HEMGNQ9BXL5 484 aa13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 RRN3Q9NYV6 651 aa13.62□□□□□ -0.23
SQSTM1-201ENST00000360718 NINJ2Q9NZG7 142 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms