RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 ICAM1P05362 532 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 PTPRAP18433 802 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 GPR1P46091 355 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 CLK1P49759 484 aaKnown RBP7.54□□□□□ -1.2
VPS13A-202ENST00000357409 CNGA3Q16281 694 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 HLA-DQA1Q5Y7H0 255 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 FAM20CQ8IXL6 584 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 ATG16L2Q8NAA4 619 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 USP7Q93009 1102 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 BBS4Q96RK4 519 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 TSC22D3Q99576 134 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 CCSER1Q9C0I3 900 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 TMEM245Q9H330 911 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 ACTR8Q9H981 624 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 SEMA4BQ9NPR2 832 aaPredicted RBP7.54□□□□□ -1.2
VPS13A-202ENST00000357409 ANKDD1BA6NHY2 528 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 A8MUA0 341 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 GRK4P32298 578 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 SV2AQ7L0J3 742 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 ESAMQ96AP7 390 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 GAKO14976 1311 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 PDS5AQ29RF7 1337 aaKnown RBP7.54□□□□□ -1.2
VPS13A-202ENST00000357409 A0A0G2JN53 185 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 E5RJQ4 531 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 H7C4K7 107 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 CLASP2O75122 1294 aaKnown RBP7.54□□□□□ -1.2
VPS13A-202ENST00000357409 ZBTB11O95625 1053 aaPredicted RBP7.54□□□□□ -1.2
VPS13A-202ENST00000357409 MARC1Q5VT66 337 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 TTC39BQ5VTQ0 682 aaPredicted RBP7.54□□□□□ -1.2
VPS13A-202ENST00000357409 RNASE11Q8TAA1 199 aaKnown RBP7.54□□□□□ -1.2
VPS13A-202ENST00000357409 GAS2L1Q99501 681 aaPredicted RBP7.54□□□□□ -1.2
VPS13A-202ENST00000357409 WRAP53Q9BUR4 548 aaKnown RBP7.54□□□□□ -1.2
VPS13A-202ENST00000357409 FAM129AQ9BZQ8 928 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 CHKBQ9Y259 395 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 AKR1A1P14550 325 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 BGNP21810 368 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 CNTN1Q12860 1018 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 CEP78Q5JTW2 689 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 STYK1Q6J9G0 422 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 HHIPL2Q6UWX4 724 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 METTL7BQ6UX53 244 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 BARGINQ6ZT62 677 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 VPS37AQ8NEZ2 397 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 SENP8Q96LD8 212 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 SEMA6BQ9H3T3 888 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 ASB8Q9H765 288 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 MAT2BQ9NZL9 334 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 DSEQ9UL01 958 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 ST3GAL5Q9UNP4 418 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 ZDHHC9Q9Y397 364 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 MTF2Q9Y483 593 aaPredicted RBP7.54□□□□□ -1.2
VPS13A-202ENST00000357409 TRIM43BA6NCK2 446 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 PEX11AO75192 247 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 ZNF23P17027 643 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 SPRP35270 261 aaPredicted RBP7.54□□□□□ -1.2
VPS13A-202ENST00000357409 BNC2Q6ZN30 1099 aaPredicted RBP7.54□□□□□ -1.2
VPS13A-202ENST00000357409 SPATA21Q7Z572 469 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 CNDP1Q96KN2 507 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 IMP3Q9NV31 184 aaKnown RBP7.54□□□□□ -1.2
VPS13A-202ENST00000357409 EVA1BQ9NVM1 165 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 PCDHB2Q9Y5E7 798 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 PFASO15067 1338 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 PHLPP2Q6ZVD8 1323 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 GLP2RO95838 553 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 GSNP06396 782 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 POLR2EP19388 210 aaKnown RBP7.54□□□□□ -1.2
VPS13A-202ENST00000357409 CDC25BP30305 580 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 AKT2P31751 481 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 COILP38432 576 aaPredicted RBP7.54□□□□□ -1.2
VPS13A-202ENST00000357409 ZSWIM7Q19AV6 140 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 FAAH2Q6GMR7 532 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 TMCO2Q7Z6W1 182 aaPredicted RBP7.54□□□□□ -1.2
VPS13A-202ENST00000357409 PCDH20Q8N6Y1 951 aaKnown RBP7.54□□□□□ -1.2
VPS13A-202ENST00000357409 DCBLD1Q8N8Z6 715 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 NIF3L1Q9GZT8 377 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.54□□□□□ -1.2
VPS13A-202ENST00000357409 SPATA31A5Q5VU36 1347 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 SPATA31A7Q8IWB4 1347 aa7.54□□□□□ -1.2
VPS13A-202ENST00000357409 TMEM120BA0PK00 339 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 RECQL4O94761 1208 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 ERCC2P18074 760 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 CDH2P19022 906 aaPredicted RBP7.53□□□□□ -1.2
VPS13A-202ENST00000357409 CRYMQ14894 314 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 RIPOR1Q6ZS17 1223 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 NANOGNBQ7Z5D8 188 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 MMGT1Q8N4V1 131 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 RTFDC1Q9BY42 306 aaPredicted RBP7.53□□□□□ -1.2
VPS13A-202ENST00000357409 OSBPL6Q9BZF3 934 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 SEMA6AQ9H2E6 1030 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 YY1AP1Q9H869 796 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 RIPK3Q9Y572 518 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 IPPQ9Y573 584 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 GRK3P35626 688 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 LSM3P62310 102 aaKnown RBP7.53□□□□□ -1.2
VPS13A-202ENST00000357409 FOXM1Q08050 763 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 KLHDC7AQ5VTJ3 777 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 ULK2Q8IYT8 1036 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 MICU2Q8IYU8 434 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 TMEM199Q8N511 208 aa7.53□□□□□ -1.2
VPS13A-202ENST00000357409 OR9Q1Q8NGQ5 310 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms