RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 CALCAP01258 141 aa16.38■□□□□ 0.21
HMGA1-202ENST00000347617 IGHA2P01877 340 aa16.38■□□□□ 0.21
HMGA1-202ENST00000347617 INSRRP14616 1297 aa16.38■□□□□ 0.21
HMGA1-202ENST00000347617 SMPD1P17405 629 aa16.38■□□□□ 0.21
HMGA1-202ENST00000347617 POLR2BP30876 1174 aaKnown RBP16.38■□□□□ 0.21
HMGA1-202ENST00000347617 AP3M2P53677 418 aa16.38■□□□□ 0.21
HMGA1-202ENST00000347617 ALDH18A1P54886 795 aaKnown RBP16.38■□□□□ 0.21
HMGA1-202ENST00000347617 USP46P62068 366 aa16.38■□□□□ 0.21
HMGA1-202ENST00000347617 HPCAP84074 193 aa16.38■□□□□ 0.21
HMGA1-202ENST00000347617 DEUP1Q05D60 604 aa16.38■□□□□ 0.21
HMGA1-202ENST00000347617 KCNJ11Q14654 390 aa16.38■□□□□ 0.21
HMGA1-202ENST00000347617 DGKDQ16760 1214 aa16.38■□□□□ 0.21
HMGA1-202ENST00000347617 FAM187BQ17R55 369 aa16.38■□□□□ 0.21
HMGA1-202ENST00000347617 C2CD6Q53TS8 623 aa16.38■□□□□ 0.21
HMGA1-202ENST00000347617 ACBD5Q5T8D3 534 aaPredicted RBP16.38■□□□□ 0.21
HMGA1-202ENST00000347617 EFCAB12Q6NXP0 572 aa16.38■□□□□ 0.21
HMGA1-202ENST00000347617 TIFABQ6ZNK6 161 aa16.38■□□□□ 0.21
HMGA1-202ENST00000347617 GSTCDQ8NEC7 633 aa16.38■□□□□ 0.21
HMGA1-202ENST00000347617 SOCS4Q8WXH5 440 aa16.38■□□□□ 0.21
HMGA1-202ENST00000347617 ZNF516Q92618 1163 aa16.38■□□□□ 0.21
HMGA1-202ENST00000347617 CLPTM1LQ96KA5 538 aa16.38■□□□□ 0.21
HMGA1-202ENST00000347617 PLEKHG4BQ96PX9 1271 aa16.38■□□□□ 0.21
HMGA1-202ENST00000347617 FAM213AQ9BRX8 229 aa16.38■□□□□ 0.21
HMGA1-202ENST00000347617 DNAJC28Q9NX36 388 aa16.38■□□□□ 0.21
HMGA1-202ENST00000347617 SF3B1O75533 1304 aaKnown RBP eCLIP16.37■□□□□ 0.215e-6■■■■■ 33.9
HMGA1-202ENST00000347617 C15orf38-AP3S2A0A0A6YYH1 394 aa16.37■□□□□ 0.21
HMGA1-202ENST00000347617 A6NJR5 290 aa16.37■□□□□ 0.21
HMGA1-202ENST00000347617 FAM155AB1AL88 458 aaPredicted RBP16.37■□□□□ 0.21
HMGA1-202ENST00000347617 F8VP50 259 aa16.37■□□□□ 0.21
HMGA1-202ENST00000347617 H3BRB1 525 aa16.37■□□□□ 0.21
HMGA1-202ENST00000347617 ACKR2O00590 384 aa16.37■□□□□ 0.21
HMGA1-202ENST00000347617 CST8O60676 142 aa16.37■□□□□ 0.21
HMGA1-202ENST00000347617 TNFAIP8O95379 198 aa16.37■□□□□ 0.21
HMGA1-202ENST00000347617 TNNI1P19237 187 aa16.37■□□□□ 0.21
HMGA1-202ENST00000347617 KDELR1P24390 212 aa16.37■□□□□ 0.21
HMGA1-202ENST00000347617 FDFT1P37268 417 aa16.37■□□□□ 0.21
HMGA1-202ENST00000347617 PDE1BQ01064 536 aa16.37■□□□□ 0.21
HMGA1-202ENST00000347617 CCNIQ14094 377 aa16.37■□□□□ 0.21
HMGA1-202ENST00000347617 ACAP1Q15027 740 aa16.37■□□□□ 0.21
HMGA1-202ENST00000347617 SURF1Q15526 300 aa16.37■□□□□ 0.21
HMGA1-202ENST00000347617 C1orf228Q6PIY5 440 aa16.37■□□□□ 0.21
HMGA1-202ENST00000347617 ARPINQ7Z6K5 226 aa16.37■□□□□ 0.21
HMGA1-202ENST00000347617 RNF149Q8NC42 400 aa16.37■□□□□ 0.21
HMGA1-202ENST00000347617 ACMSDQ8TDX5 336 aa16.37■□□□□ 0.21
HMGA1-202ENST00000347617 SLC26A7Q8TE54 656 aa16.37■□□□□ 0.21
HMGA1-202ENST00000347617 ZNF606Q8WXB4 792 aa16.37■□□□□ 0.21
HMGA1-202ENST00000347617 ACO2Q99798 780 aaKnown RBP16.37■□□□□ 0.21
HMGA1-202ENST00000347617 TARS2Q9BW92 718 aaKnown RBP16.37■□□□□ 0.21
HMGA1-202ENST00000347617 TUT1Q9H6E5 874 aaKnown RBP16.37■□□□□ 0.21
HMGA1-202ENST00000347617 ZNF696Q9H7X3 374 aa16.37■□□□□ 0.21
HMGA1-202ENST00000347617 SH3BP1Q9Y3L3 701 aa16.37■□□□□ 0.21
HMGA1-202ENST00000347617 DTNAQ9Y4J8 743 aa16.37■□□□□ 0.21
HMGA1-202ENST00000347617 TTLL3Q9Y4R7 772 aa16.37■□□□□ 0.21
HMGA1-202ENST00000347617 PFDN1O60925 122 aa16.36■□□□□ 0.21
HMGA1-202ENST00000347617 COQ9O75208 318 aa16.36■□□□□ 0.21
HMGA1-202ENST00000347617 CLPTM1O96005 669 aa16.36■□□□□ 0.21
HMGA1-202ENST00000347617 SMIM18P0DKX4 95 aa16.36■□□□□ 0.21
HMGA1-202ENST00000347617 L1CAMP32004 1257 aa16.36■□□□□ 0.21
HMGA1-202ENST00000347617 GRIA2P42262 883 aa16.36■□□□□ 0.21
HMGA1-202ENST00000347617 AQP4P55087 323 aa16.36■□□□□ 0.21
HMGA1-202ENST00000347617 EIF3EP60228 445 aaKnown RBP16.36■□□□□ 0.21
HMGA1-202ENST00000347617 BASP1P80723 227 aaKnown RBP16.36■□□□□ 0.21
HMGA1-202ENST00000347617 CDC42EP1Q00587 391 aa16.36■□□□□ 0.21
HMGA1-202ENST00000347617 TNFAIP2Q03169 654 aa16.36■□□□□ 0.21
HMGA1-202ENST00000347617 FOLH1Q04609 750 aa16.36■□□□□ 0.21
HMGA1-202ENST00000347617 GAD2Q05329 585 aa16.36■□□□□ 0.21
HMGA1-202ENST00000347617 USP41Q3LFD5 358 aa16.36■□□□□ 0.21
HMGA1-202ENST00000347617 TDRD10Q5VZ19 366 aaKnown RBP16.36■□□□□ 0.21
HMGA1-202ENST00000347617 TSHZ1Q6ZSZ6 1077 aa16.36■□□□□ 0.21
HMGA1-202ENST00000347617 SATL1Q86VE3 508 aa16.36■□□□□ 0.21
HMGA1-202ENST00000347617 UBR7Q8N806 425 aa16.36■□□□□ 0.21
HMGA1-202ENST00000347617 PIWIL2Q8TC59 973 aaKnown RBP16.36■□□□□ 0.21
HMGA1-202ENST00000347617 LBHD1Q9BQE6 289 aaPredicted RBP16.36■□□□□ 0.21
HMGA1-202ENST00000347617 MSTO1Q9BUK6 570 aa16.36■□□□□ 0.21
HMGA1-202ENST00000347617 OCEL1Q9H607 264 aa16.36■□□□□ 0.21
HMGA1-202ENST00000347617 XAB2Q9HCS7 855 aaKnown RBP16.36■□□□□ 0.21
HMGA1-202ENST00000347617 PAK5Q9P286 719 aa16.36■□□□□ 0.21
HMGA1-202ENST00000347617 PCDHGC3Q9UN70 934 aa16.36■□□□□ 0.21
HMGA1-202ENST00000347617 RRN3P2A6NIE6 340 aa16.36■□□□□ 0.21
HMGA1-202ENST00000347617 PRKCBP05771 671 aa16.36■□□□□ 0.21
HMGA1-202ENST00000347617 MMP3P08254 477 aa16.36■□□□□ 0.21
HMGA1-202ENST00000347617 C6orf222P0C671 652 aaPredicted RBP16.36■□□□□ 0.21
HMGA1-202ENST00000347617 ETS2P15036 469 aa16.36■□□□□ 0.21
HMGA1-202ENST00000347617 TCF4P15884 667 aa16.36■□□□□ 0.21
HMGA1-202ENST00000347617 PROZP22891 400 aa16.36■□□□□ 0.21
HMGA1-202ENST00000347617 EIF4BP23588 611 aaKnown RBP16.36■□□□□ 0.21
HMGA1-202ENST00000347617 SERPINB8P50452 374 aa16.36■□□□□ 0.21
HMGA1-202ENST00000347617 GDF10P55107 478 aa16.36■□□□□ 0.21
HMGA1-202ENST00000347617 ROR1Q01973 937 aa16.36■□□□□ 0.21
HMGA1-202ENST00000347617 CREB5Q02930 508 aa16.36■□□□□ 0.21
HMGA1-202ENST00000347617 SLC25A11Q02978 314 aaKnown RBP16.36■□□□□ 0.21
HMGA1-202ENST00000347617 TRIP10Q15642 601 aa16.36■□□□□ 0.21
HMGA1-202ENST00000347617 RABGAP1LQ5R372 815 aa16.36■□□□□ 0.21
HMGA1-202ENST00000347617 ZFP1Q6P2D0 407 aa16.36■□□□□ 0.21
HMGA1-202ENST00000347617 OR6J1Q8NGC5 347 aa16.36■□□□□ 0.21
HMGA1-202ENST00000347617 CGRRF1Q99675 332 aa16.36■□□□□ 0.21
HMGA1-202ENST00000347617 IMPG2Q9BZV3 1241 aa16.36■□□□□ 0.21
HMGA1-202ENST00000347617 RSAD1Q9HA92 442 aa16.36■□□□□ 0.21
HMGA1-202ENST00000347617 ETNK2Q9NVF9 386 aa16.36■□□□□ 0.21
HMGA1-202ENST00000347617 CDH22Q9UJ99 828 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms