RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 GREB1Q4ZG55 1949 aa13.85□□□□□ -0.19
HMGB1-202ENST00000339872 IRAK2O43187 625 aa13.85□□□□□ -0.19
HMGB1-202ENST00000339872 VNN2O95498 520 aa13.85□□□□□ -0.19
HMGB1-202ENST00000339872 IGLV3-25P01717 112 aa13.85□□□□□ -0.19
HMGB1-202ENST00000339872 GABPB1Q06547 395 aaPredicted RBP13.85□□□□□ -0.19
HMGB1-202ENST00000339872 XRCC4Q13426 336 aa13.85□□□□□ -0.19
HMGB1-202ENST00000339872 DPYSQ14117 519 aa13.85□□□□□ -0.19
HMGB1-202ENST00000339872 USP41Q3LFD5 358 aa13.85□□□□□ -0.19
HMGB1-202ENST00000339872 SLC45A4Q5BKX6 768 aa13.85□□□□□ -0.19
HMGB1-202ENST00000339872 KCNT2Q6UVM3 1135 aa13.85□□□□□ -0.19
HMGB1-202ENST00000339872 SH2D3CQ8N5H7 860 aa13.85□□□□□ -0.19
HMGB1-202ENST00000339872 IGSF21Q96ID5 467 aa13.85□□□□□ -0.19
HMGB1-202ENST00000339872 SMOC2Q9H3U7 446 aa13.85□□□□□ -0.19
HMGB1-202ENST00000339872 PRDM16Q9HAZ2 1276 aa13.85□□□□□ -0.19
HMGB1-202ENST00000339872 LRRC4CQ9HCJ2 640 aa13.85□□□□□ -0.19
HMGB1-202ENST00000339872 SFMBT1Q9UHJ3 866 aa13.85□□□□□ -0.19
HMGB1-202ENST00000339872 ADAM21Q9UKJ8 722 aa13.85□□□□□ -0.19
HMGB1-202ENST00000339872 GOLGA8MH3BSY2 632 aa13.85□□□□□ -0.19
HMGB1-202ENST00000339872 MSI1O43347 362 aaKnown RBP13.85□□□□□ -0.19
HMGB1-202ENST00000339872 SMARCB1Q12824 385 aa13.85□□□□□ -0.19
HMGB1-202ENST00000339872 SEMA3BQ13214 749 aa13.85□□□□□ -0.19
HMGB1-202ENST00000339872 PSMD5Q16401 504 aa13.85□□□□□ -0.19
HMGB1-202ENST00000339872 ANKRD22Q5VYY1 191 aa13.85□□□□□ -0.19
HMGB1-202ENST00000339872 CEP128Q6ZU80 1094 aa13.85□□□□□ -0.19
HMGB1-202ENST00000339872 DENND5BQ6ZUT9 1274 aa13.85□□□□□ -0.19
HMGB1-202ENST00000339872 MON1AQ86VX9 555 aa13.85□□□□□ -0.19
HMGB1-202ENST00000339872 FBXO22Q8NEZ5 403 aa13.85□□□□□ -0.19
HMGB1-202ENST00000339872 CASP10Q92851 521 aa13.85□□□□□ -0.19
HMGB1-202ENST00000339872 RTP4Q96DX8 246 aa13.85□□□□□ -0.19
HMGB1-202ENST00000339872 ATP6V1G3Q96LB4 118 aa13.85□□□□□ -0.19
HMGB1-202ENST00000339872 QKIQ96PU8 341 aaKnown RBP eCLIP13.85□□□□□ -0.19
HMGB1-202ENST00000339872 VN1R3Q9BXE9 311 aa13.85□□□□□ -0.19
HMGB1-202ENST00000339872 OXCT2Q9BYC2 517 aaPredicted RBP13.85□□□□□ -0.19
HMGB1-202ENST00000339872 OSER1Q9NX31 292 aa13.85□□□□□ -0.19
HMGB1-202ENST00000339872 GMIPQ9P107 970 aa13.85□□□□□ -0.19
HMGB1-202ENST00000339872 SNX10Q9Y5X0 201 aa13.85□□□□□ -0.19
HMGB1-202ENST00000339872 C2CD2LO14523 706 aa13.84□□□□□ -0.19
HMGB1-202ENST00000339872 ACRP10323 421 aa13.84□□□□□ -0.19
HMGB1-202ENST00000339872 RPL17P18621 184 aaKnown RBP13.84□□□□□ -0.19
HMGB1-202ENST00000339872 WDR5P61964 334 aaKnown RBP13.84□□□□□ -0.19
HMGB1-202ENST00000339872 DUSP4Q13115 394 aa13.84□□□□□ -0.19
HMGB1-202ENST00000339872 KYNUQ16719 465 aa13.84□□□□□ -0.19
HMGB1-202ENST00000339872 KIAA1841Q6NSI8 718 aa13.84□□□□□ -0.19
HMGB1-202ENST00000339872 NAT8LQ8N9F0 302 aa13.84□□□□□ -0.19
HMGB1-202ENST00000339872 NETO2Q8NC67 525 aa13.84□□□□□ -0.19
HMGB1-202ENST00000339872 FAM76AQ8TAV0 307 aa13.84□□□□□ -0.19
HMGB1-202ENST00000339872 OLFM3Q96PB7 478 aa13.84□□□□□ -0.19
HMGB1-202ENST00000339872 EPAS1Q99814 870 aa13.84□□□□□ -0.19
HMGB1-202ENST00000339872 SAYSD1Q9NPB0 183 aa13.84□□□□□ -0.19
HMGB1-202ENST00000339872 NINJ2Q9NZG7 142 aa13.84□□□□□ -0.19
HMGB1-202ENST00000339872 PAK5Q9P286 719 aa13.84□□□□□ -0.19
HMGB1-202ENST00000339872 MTRRQ9UBK8 725 aa13.84□□□□□ -0.19
HMGB1-202ENST00000339872 OR12D3Q9UGF7 316 aa13.84□□□□□ -0.19
HMGB1-202ENST00000339872 KIAA0355O15063 1070 aa13.84□□□□□ -0.19
HMGB1-202ENST00000339872 DCLK1O15075 740 aa13.84□□□□□ -0.19
HMGB1-202ENST00000339872 ADAM12O43184 909 aa13.84□□□□□ -0.19
HMGB1-202ENST00000339872 TTC4O95801 387 aa13.84□□□□□ -0.19
HMGB1-202ENST00000339872 EFEMP2O95967 443 aa13.84□□□□□ -0.19
HMGB1-202ENST00000339872 HAPLN1P10915 354 aaPredicted RBP13.84□□□□□ -0.19
HMGB1-202ENST00000339872 ERCC2P18074 760 aa13.84□□□□□ -0.19
HMGB1-202ENST00000339872 YWHAQP27348 245 aa13.84□□□□□ -0.19
HMGB1-202ENST00000339872 HEATR6Q6AI08 1181 aaKnown RBP13.84□□□□□ -0.19
HMGB1-202ENST00000339872 BZW1Q7L1Q6 419 aaKnown RBP13.84□□□□□ -0.19
HMGB1-202ENST00000339872 HOOK3Q86VS8 718 aa13.84□□□□□ -0.19
HMGB1-202ENST00000339872 C2orf15Q8WU43 125 aaKnown RBP13.84□□□□□ -0.19
HMGB1-202ENST00000339872 TFB1MQ8WVM0 346 aaKnown RBP13.84□□□□□ -0.19
HMGB1-202ENST00000339872 FBXO32Q969P5 355 aa13.84□□□□□ -0.19
HMGB1-202ENST00000339872 ZNF689Q96CS4 500 aaPredicted RBP13.84□□□□□ -0.19
HMGB1-202ENST00000339872 C9orf72Q96LT7 481 aa13.84□□□□□ -0.19
HMGB1-202ENST00000339872 TMEM106CQ9BVX2 250 aa13.84□□□□□ -0.19
HMGB1-202ENST00000339872 BCCIPQ9P287 314 aaKnown RBP eCLIP13.84□□□□□ -0.19
HMGB1-202ENST00000339872 PTPRSQ13332 1948 aa13.83□□□□□ -0.2
HMGB1-202ENST00000339872 TCRBV7S3A2A0A539 114 aa13.83□□□□□ -0.2
HMGB1-202ENST00000339872 WDR27A2RRH5 827 aa13.83□□□□□ -0.2
HMGB1-202ENST00000339872 SMIM23A6NLE4 172 aa13.83□□□□□ -0.2
HMGB1-202ENST00000339872 RTN3O95197 1032 aaPredicted RBP13.83□□□□□ -0.2
HMGB1-202ENST00000339872 MAGEA4P43358 317 aa13.83□□□□□ -0.2
HMGB1-202ENST00000339872 GAD2Q05329 585 aa13.83□□□□□ -0.2
HMGB1-202ENST00000339872 EIF4EBP2Q13542 120 aaPredicted RBP13.83□□□□□ -0.2
HMGB1-202ENST00000339872 BTG3Q14201 252 aaPredicted RBP13.83□□□□□ -0.2
HMGB1-202ENST00000339872 PAFAH1B3Q15102 231 aaKnown RBP13.83□□□□□ -0.2
HMGB1-202ENST00000339872 SKIDA1Q1XH10 827 aa13.83□□□□□ -0.2
HMGB1-202ENST00000339872 MFSD5Q6N075 450 aa13.83□□□□□ -0.2
HMGB1-202ENST00000339872 RELL1Q8IUW5 271 aa13.83□□□□□ -0.2
HMGB1-202ENST00000339872 RNF168Q8IYW5 571 aaPredicted RBP13.83□□□□□ -0.2
HMGB1-202ENST00000339872 ARHGAP18Q8N392 663 aa13.83□□□□□ -0.2
HMGB1-202ENST00000339872 TMEM199Q8N511 208 aa13.83□□□□□ -0.2
HMGB1-202ENST00000339872 CCDC110Q8TBZ0 833 aa13.83□□□□□ -0.2
HMGB1-202ENST00000339872 ZNF558Q96NG5 402 aa13.83□□□□□ -0.2
HMGB1-202ENST00000339872 RAB6BQ9NRW1 208 aa13.83□□□□□ -0.2
HMGB1-202ENST00000339872 XPO7Q9UIA9 1087 aaKnown RBP13.83□□□□□ -0.2
HMGB1-202ENST00000339872 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.82□□□□□ -0.2
HMGB1-202ENST00000339872 HACD1B0YJ81 288 aa13.82□□□□□ -0.2
HMGB1-202ENST00000339872 HMGB1P1B2RPK0 211 aaPredicted RBP13.82□□□□□ -0.2
HMGB1-202ENST00000339872 TMEM63AO94886 807 aa13.82□□□□□ -0.2
HMGB1-202ENST00000339872 CCR1P32246 355 aa13.82□□□□□ -0.2
HMGB1-202ENST00000339872 OR1D2P34982 312 aa13.82□□□□□ -0.2
HMGB1-202ENST00000339872 HCAR3P49019 387 aa13.82□□□□□ -0.2
HMGB1-202ENST00000339872 TERF2Q15554 542 aa13.82□□□□□ -0.2
HMGB1-202ENST00000339872 HIF1AQ16665 826 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms