RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 BBS4Q96RK4 519 aa12.93□□□□□ -0.34
SDC3-201ENST00000336798 CGRRF1Q99675 332 aa12.93□□□□□ -0.34
SDC3-201ENST00000336798 DPY30Q9C005 99 aa12.93□□□□□ -0.34
SDC3-201ENST00000336798 C6orf62Q9GZU0 229 aaPredicted RBP12.93□□□□□ -0.34
SDC3-201ENST00000336798 GBA2Q9HCG7 927 aaPredicted RBP12.93□□□□□ -0.34
SDC3-201ENST00000336798 A0A1W2PQJ5 194 aa12.93□□□□□ -0.34
SDC3-201ENST00000336798 TIMM44O43615 452 aa12.93□□□□□ -0.34
SDC3-201ENST00000336798 SEC22BO75396 215 aa12.93□□□□□ -0.34
SDC3-201ENST00000336798 MAPK11Q15759 364 aa12.93□□□□□ -0.34
SDC3-201ENST00000336798 TBCELQ5QJ74 424 aa12.93□□□□□ -0.34
SDC3-201ENST00000336798 CYP20A1Q6UW02 462 aa12.93□□□□□ -0.34
SDC3-201ENST00000336798 TMEM26Q6ZUK4 368 aa12.93□□□□□ -0.34
SDC3-201ENST00000336798 RNF148Q8N7C7 305 aa12.93□□□□□ -0.34
SDC3-201ENST00000336798 FNDC5Q8NAU1 212 aa12.93□□□□□ -0.34
SDC3-201ENST00000336798 COL26A1Q96A83 441 aa12.93□□□□□ -0.34
SDC3-201ENST00000336798 CISHQ9NSE2 258 aa12.93□□□□□ -0.34
SDC3-201ENST00000336798 ARHGEF40Q8TER5 1519 aa12.93□□□□□ -0.34
SDC3-201ENST00000336798 ARHGAP31Q2M1Z3 1444 aa12.93□□□□□ -0.34
SDC3-201ENST00000336798 ZNF862O60290 1169 aa12.92□□□□□ -0.34
SDC3-201ENST00000336798 MARSP56192 900 aaKnown RBP12.92□□□□□ -0.34
SDC3-201ENST00000336798 ITPK1Q13572 414 aa12.92□□□□□ -0.34
SDC3-201ENST00000336798 ZNF618Q5T7W0 954 aa12.92□□□□□ -0.34
SDC3-201ENST00000336798 TRAPPC12Q8WVT3 735 aa12.92□□□□□ -0.34
SDC3-201ENST00000336798 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.92□□□□□ -0.34
SDC3-201ENST00000336798 SNCAIPQ9Y6H5 919 aa12.92□□□□□ -0.34
SDC3-201ENST00000336798 OR6A2O95222 327 aa12.92□□□□□ -0.34
SDC3-201ENST00000336798 CAP2P40123 477 aa12.92□□□□□ -0.34
SDC3-201ENST00000336798 NAMPTP43490 491 aa12.92□□□□□ -0.34
SDC3-201ENST00000336798 LAMTOR4Q0VGL1 99 aa12.92□□□□□ -0.34
SDC3-201ENST00000336798 STX4Q12846 297 aa12.92□□□□□ -0.34
SDC3-201ENST00000336798 ZCCHC8Q6NZY4 707 aaKnown RBP12.92□□□□□ -0.34
SDC3-201ENST00000336798 CYP4Z2PQ8N1L4 340 aa12.92□□□□□ -0.34
SDC3-201ENST00000336798 BTBD9Q96Q07 612 aa12.92□□□□□ -0.34
SDC3-201ENST00000336798 PPCSQ9HAB8 311 aa12.92□□□□□ -0.34
SDC3-201ENST00000336798 ATP13A1Q9HD20 1204 aa12.92□□□□□ -0.34
SDC3-201ENST00000336798 FAM220BPB1ANY3 271 aa12.92□□□□□ -0.34
SDC3-201ENST00000336798 ATG7O95352 703 aa12.92□□□□□ -0.34
SDC3-201ENST00000336798 CPA3P15088 417 aa12.92□□□□□ -0.34
SDC3-201ENST00000336798 RAG1P15918 1043 aa12.92□□□□□ -0.34
SDC3-201ENST00000336798 LBPP18428 481 aa12.92□□□□□ -0.34
SDC3-201ENST00000336798 FMO4P31512 558 aa12.92□□□□□ -0.34
SDC3-201ENST00000336798 EPHX2P34913 555 aa12.92□□□□□ -0.34
SDC3-201ENST00000336798 MPP3Q13368 585 aa12.92□□□□□ -0.34
SDC3-201ENST00000336798 CCNIQ14094 377 aa12.92□□□□□ -0.34
SDC3-201ENST00000336798 BTG3Q14201 252 aaPredicted RBP12.92□□□□□ -0.34
SDC3-201ENST00000336798 TSC22D1Q15714 1073 aa12.92□□□□□ -0.34
SDC3-201ENST00000336798 CYB5D1Q6P9G0 228 aa12.92□□□□□ -0.34
SDC3-201ENST00000336798 ZNF34Q8IZ26 560 aa12.92□□□□□ -0.34
SDC3-201ENST00000336798 LGI2Q8N0V4 545 aa12.92□□□□□ -0.34
SDC3-201ENST00000336798 ATP8B4Q8TF62 1192 aa12.92□□□□□ -0.34
SDC3-201ENST00000336798 TMEM159Q96B96 161 aa12.92□□□□□ -0.34
SDC3-201ENST00000336798 TMEM79Q9BSE2 394 aa12.92□□□□□ -0.34
SDC3-201ENST00000336798 ZDHHC6Q9H6R6 413 aa12.92□□□□□ -0.34
SDC3-201ENST00000336798 JCADQ9P266 1359 aa12.92□□□□□ -0.34
SDC3-201ENST00000336798 KPNA3O00505 521 aaPredicted RBP12.92□□□□□ -0.34
SDC3-201ENST00000336798 TSPAN9O75954 239 aa12.92□□□□□ -0.34
SDC3-201ENST00000336798 CYP2A7P20853 494 aa12.92□□□□□ -0.34
SDC3-201ENST00000336798 MAPK7Q13164 816 aa12.92□□□□□ -0.34
SDC3-201ENST00000336798 PDK2Q15119 407 aa12.92□□□□□ -0.34
SDC3-201ENST00000336798 ZCWPW2Q504Y3 356 aa12.92□□□□□ -0.34
SDC3-201ENST00000336798 ARRDC4Q8NCT1 418 aa12.92□□□□□ -0.34
SDC3-201ENST00000336798 TALDO1P37837 337 aa12.92□□□□□ -0.34
SDC3-201ENST00000336798 PLK1P53350 603 aa12.92□□□□□ -0.34
SDC3-201ENST00000336798 GLT6D1Q7Z4J2 308 aa12.92□□□□□ -0.34
SDC3-201ENST00000336798 R3HCC1LQ7Z5L2 792 aaKnown RBP12.92□□□□□ -0.34
SDC3-201ENST00000336798 PALB2Q86YC2 1186 aa12.92□□□□□ -0.34
SDC3-201ENST00000336798 CSGALNACT1Q8TDX6 532 aa12.92□□□□□ -0.34
SDC3-201ENST00000336798 PPP2R1BP30154 601 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 CCR1P32246 355 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 TUBP50607 506 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 IRAK1P51617 712 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 PRKAG1P54619 331 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 TBX4P57082 545 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 CACTIN-AS1Q8N1I8 211 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 ZSCAN18Q8TBC5 510 aaPredicted RBP12.91□□□□□ -0.34
SDC3-201ENST00000336798 TAS1R2Q8TE23 839 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 CCDC126Q96EE4 140 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 ALDH8A1Q9H2A2 487 aaPredicted RBP12.91□□□□□ -0.34
SDC3-201ENST00000336798 RIBC2Q9H4K1 309 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 TUBGCP4Q9UGJ1 667 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 CCDC130P13994 396 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 LHX1P48742 406 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 PEX5P50542 639 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 RASA2Q15283 850 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 NBPF12Q5TAG4 269 aaPredicted RBP12.91□□□□□ -0.34
SDC3-201ENST00000336798 LLGL2Q6P1M3 1020 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 TATDN2Q93075 761 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 TBCDQ9BTW9 1192 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 PXMP2Q9NR77 195 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 COQ6Q9Y2Z9 468 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 ACOT9Q9Y305 439 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 TRIM24O15164 1050 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 CD44P16070 742 aaKnown RBP12.91□□□□□ -0.34
SDC3-201ENST00000336798 NFIAQ12857 509 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 TAF5Q15542 800 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 OVOS1Q6IE37 1185 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 APLFQ8IW19 511 aaPredicted RBP12.91□□□□□ -0.34
SDC3-201ENST00000336798 GRIN3AQ8TCU5 1115 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 GINS4Q9BRT9 223 aa12.91□□□□□ -0.34
SDC3-201ENST00000336798 MID1IP1Q9NPA3 183 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms