RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 ATP4AP20648 1035 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 GP5P40197 560 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 RPL7AP62424 266 aaKnown RBP7.07□□□□□ -1.28
SF3B1-201ENST00000335508 ORC1Q13415 861 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 NAA30Q147X3 362 aaPredicted RBP7.07□□□□□ -1.28
SF3B1-201ENST00000335508 SLC45A4Q5BKX6 768 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 RAPGEF5Q92565 580 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 CPXM1Q96SM3 734 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 STRA6Q9BX79 667 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 ZCCHC2Q9C0B9 1178 aaKnown RBP7.07□□□□□ -1.28
SF3B1-201ENST00000335508 ACP6Q9NPH0 428 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 CHORDC1Q9UHD1 332 aaPredicted RBP7.07□□□□□ -1.28
SF3B1-201ENST00000335508 XPO7Q9UIA9 1087 aaKnown RBP7.07□□□□□ -1.28
SF3B1-201ENST00000335508 DNMT3LQ9UJW3 386 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 FAM50BQ9Y247 325 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 ACOT9Q9Y305 439 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 RNF225M0QZC1 329 aaPredicted RBP7.07□□□□□ -1.28
SF3B1-201ENST00000335508 DNM1LO00429 736 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 MLNP12872 115 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 PRUNE1Q86TP1 453 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 FAM9CQ8IZT9 166 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 DQX1Q8TE96 717 aaKnown RBP7.07□□□□□ -1.28
SF3B1-201ENST00000335508 CHMP6Q96FZ7 201 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 POLR1EQ9GZS1 481 aaKnown RBP7.07□□□□□ -1.28
SF3B1-201ENST00000335508 ARHGEF38Q9NXL2 777 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 CAMSAP3Q9P1Y5 1249 aaPredicted RBP7.07□□□□□ -1.28
SF3B1-201ENST00000335508 FAM153AQ9UHL3 310 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 GNEQ9Y223 722 aaKnown RBP7.07□□□□□ -1.28
SF3B1-201ENST00000335508 ZNF510Q9Y2H8 683 aa7.07□□□□□ -1.28
SF3B1-201ENST00000335508 HEATR9A2RTY3 570 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 MAGEA11P43364 429 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 FAM83EQ2M2I3 478 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 PARP6Q2NL67 630 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 FSCBQ5H9T9 825 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 RAB42Q8N4Z0 105 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 ZNF461Q8TAF7 563 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 ZNF296Q8WUU4 475 aaPredicted RBP7.06□□□□□ -1.28
SF3B1-201ENST00000335508 ATG4AQ8WYN0 398 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 ANKRD7Q92527 254 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 TTC17Q96AE7 1141 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 BAG5Q9UL15 447 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 NBASA2RRP1 2371 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 KIF3CO14782 793 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 GRK2P25098 689 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 OR1E1P30953 314 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 CTNNB1P35222 781 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 MRPS25P82663 173 aaKnown RBP7.06□□□□□ -1.28
SF3B1-201ENST00000335508 NAB1Q13506 487 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 HNRNPDQ14103 355 aaKnown RBP7.06□□□□□ -1.28
SF3B1-201ENST00000335508 MORN1Q5T089 497 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 LRRC8EQ6NSJ5 796 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 MREGQ8N565 214 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 MYLPFQ96A32 169 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 TMEM175Q9BSA9 504 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 EFHD1Q9BUP0 239 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 TXLNGQ9NUQ3 528 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 KLHL11Q9NVR0 708 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 APOBEC2Q9Y235 224 aaKnown RBP7.06□□□□□ -1.28
SF3B1-201ENST00000335508 HBS1LQ9Y450 684 aaKnown RBP7.06□□□□□ -1.28
SF3B1-201ENST00000335508 LAMB4A4D0S4 1761 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP7.06□□□□□ -1.28
SF3B1-201ENST00000335508 CCDC22O60826 627 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 RAD23BP54727 409 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 DAOAP59103 153 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP7.06□□□□□ -1.28
SF3B1-201ENST00000335508 TRIM56Q9BRZ2 755 aaKnown RBP7.06□□□□□ -1.28
SF3B1-201ENST00000335508 ACTR5Q9H9F9 607 aaPredicted RBP7.06□□□□□ -1.28
SF3B1-201ENST00000335508 NDE1Q9NXR1 346 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 CNTN3Q9P232 1028 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 UBA2Q9UBT2 640 aaPredicted RBP7.06□□□□□ -1.28
SF3B1-201ENST00000335508 REXO2Q9Y3B8 237 aaKnown RBP7.06□□□□□ -1.28
SF3B1-201ENST00000335508 GMNCA6NCL1 334 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 RASSF10A6NK89 507 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 ADAMTS3O15072 1205 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 SLC4A1P02730 911 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 CLTBP09497 229 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 RAP1GAPP47736 663 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 JAM2P57087 298 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 RBBP5Q15291 538 aaKnown RBP7.06□□□□□ -1.28
SF3B1-201ENST00000335508 VARS2Q5ST30 1063 aaKnown RBP7.06□□□□□ -1.28
SF3B1-201ENST00000335508 CNKSR3Q6P9H4 555 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 FAM228AQ86W67 206 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 MS4A14Q96JA4 679 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 EIF2AQ9BY44 585 aaKnown RBP7.06□□□□□ -1.28
SF3B1-201ENST00000335508 FUT8Q9BYC5 575 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 DRC3Q9H069 523 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 SIX2Q9NPC8 291 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 SMPD4Q9NXE4 827 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 PDE2AO00408 941 aaPredicted RBP7.06□□□□□ -1.28
SF3B1-201ENST00000335508 TLL1O43897 1013 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 SNX2O60749 519 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 VPS26AO75436 327 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 MYL4P12829 197 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 HLA-DPA1P20036 260 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 GGCXP38435 758 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 MPP3Q13368 585 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 USP10Q14694 798 aaKnown RBP7.06□□□□□ -1.28
SF3B1-201ENST00000335508 ZNF284Q2VY69 593 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 ATAT1Q5SQI0 421 aa7.06□□□□□ -1.28
SF3B1-201ENST00000335508 PPP1R26Q5T8A7 1209 aaPredicted RBP7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms