RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 UBA3Q8TBC4 463 aa17.12■□□□□ 0.33
PDLIM1-201ENST00000329399 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.12■□□□□ 0.33
PDLIM1-201ENST00000329399 PARD6BQ9BYG5 372 aa17.12■□□□□ 0.33
PDLIM1-201ENST00000329399 BRD9Q9H8M2 597 aa17.12■□□□□ 0.33
PDLIM1-201ENST00000329399 TDP1Q9NUW8 608 aa17.12■□□□□ 0.33
PDLIM1-201ENST00000329399 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.12■□□□□ 0.33
PDLIM1-201ENST00000329399 ASNSD1Q9NWL6 643 aa17.12■□□□□ 0.33
PDLIM1-201ENST00000329399 TRPM5Q9NZQ8 1165 aa17.12■□□□□ 0.33
PDLIM1-201ENST00000329399 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.12■□□□□ 0.33
PDLIM1-201ENST00000329399 CYTH4Q9UIA0 394 aa17.12■□□□□ 0.33
PDLIM1-201ENST00000329399 V9GYY5 206 aaPredicted RBP17.12■□□□□ 0.33
PDLIM1-201ENST00000329399 KRIT1O00522 736 aa17.11■□□□□ 0.33
PDLIM1-201ENST00000329399 ATP8B1O43520 1251 aa17.11■□□□□ 0.33
PDLIM1-201ENST00000329399 KRT7P08729 469 aa17.11■□□□□ 0.33
PDLIM1-201ENST00000329399 GLULP15104 373 aa17.11■□□□□ 0.33
PDLIM1-201ENST00000329399 HDCP19113 662 aa17.11■□□□□ 0.33
PDLIM1-201ENST00000329399 AVPR1AP37288 418 aa17.11■□□□□ 0.33
PDLIM1-201ENST00000329399 SOX9P48436 509 aa17.11■□□□□ 0.33
PDLIM1-201ENST00000329399 MAP9Q49MG5 647 aa17.11■□□□□ 0.33
PDLIM1-201ENST00000329399 TRIM68Q6AZZ1 485 aa17.11■□□□□ 0.33
PDLIM1-201ENST00000329399 RCOR2Q8IZ40 523 aa17.11■□□□□ 0.33
PDLIM1-201ENST00000329399 CELF5Q8N6W0 485 aaKnown RBP17.11■□□□□ 0.33
PDLIM1-201ENST00000329399 NOA1Q8NC60 698 aaKnown RBP17.11■□□□□ 0.33
PDLIM1-201ENST00000329399 TTC16Q8NEE8 873 aa17.11■□□□□ 0.33
PDLIM1-201ENST00000329399 KCTD13Q8WZ19 329 aa17.11■□□□□ 0.33
PDLIM1-201ENST00000329399 NDRG1Q92597 394 aaKnown RBP17.11■□□□□ 0.33
PDLIM1-201ENST00000329399 ALG3Q92685 438 aa17.11■□□□□ 0.33
PDLIM1-201ENST00000329399 FBXO32Q969P5 355 aa17.11■□□□□ 0.33
PDLIM1-201ENST00000329399 RBM41Q96IZ5 413 aaKnown RBP17.11■□□□□ 0.33
PDLIM1-201ENST00000329399 MS4A14Q96JA4 679 aa17.11■□□□□ 0.33
PDLIM1-201ENST00000329399 MCEEQ96PE7 176 aa17.11■□□□□ 0.33
PDLIM1-201ENST00000329399 CCSER2Q9H7U1 834 aa17.11■□□□□ 0.33
PDLIM1-201ENST00000329399 TBC1D17Q9HA65 648 aa17.11■□□□□ 0.33
PDLIM1-201ENST00000329399 NMUR1Q9HB89 426 aa17.11■□□□□ 0.33
PDLIM1-201ENST00000329399 GKN1Q9NS71 199 aa17.11■□□□□ 0.33
PDLIM1-201ENST00000329399 GTSE1Q9NYZ3 720 aa17.11■□□□□ 0.33
PDLIM1-201ENST00000329399 USP34Q70CQ2 3546 aa17.1■□□□□ 0.33
PDLIM1-201ENST00000329399 SCAMP3O14828 347 aaKnown RBP17.1■□□□□ 0.33
PDLIM1-201ENST00000329399 RNF8O76064 485 aa17.1■□□□□ 0.33
PDLIM1-201ENST00000329399 RTN3O95197 1032 aaPredicted RBP17.1■□□□□ 0.33
PDLIM1-201ENST00000329399 ZRANB2O95218 330 aaKnown RBP eCLIP17.1■□□□□ 0.33
PDLIM1-201ENST00000329399 TBX18O95935 607 aa17.1■□□□□ 0.33
PDLIM1-201ENST00000329399 OAS1P00973 400 aaKnown RBP17.1■□□□□ 0.33
PDLIM1-201ENST00000329399 FGGP02679 453 aa17.1■□□□□ 0.33
PDLIM1-201ENST00000329399 ZDHHC11BP0C7U3 371 aa17.1■□□□□ 0.33
PDLIM1-201ENST00000329399 DDX6P26196 483 aaKnown RBP eCLIP17.1■□□□□ 0.334e-11■■□□□ 12.1
PDLIM1-201ENST00000329399 PCK1P35558 622 aa17.1■□□□□ 0.33
PDLIM1-201ENST00000329399 DNA2P51530 1060 aa17.1■□□□□ 0.33
PDLIM1-201ENST00000329399 STARD6P59095 220 aa17.1■□□□□ 0.33
PDLIM1-201ENST00000329399 SLC6A3Q01959 620 aa17.1■□□□□ 0.33
PDLIM1-201ENST00000329399 MLF2Q15773 248 aaPredicted RBP17.1■□□□□ 0.33
PDLIM1-201ENST00000329399 LONRF2Q1L5Z9 754 aa17.1■□□□□ 0.33
PDLIM1-201ENST00000329399 C8orf74Q6P047 294 aa17.1■□□□□ 0.33
PDLIM1-201ENST00000329399 BPIFB1Q8TDL5 484 aa17.1■□□□□ 0.33
PDLIM1-201ENST00000329399 DEPDC1BQ8WUY9 529 aa17.1■□□□□ 0.33
PDLIM1-201ENST00000329399 WBP2Q969T9 261 aa17.1■□□□□ 0.33
PDLIM1-201ENST00000329399 BTBD6Q96KE9 485 aa17.1■□□□□ 0.33
PDLIM1-201ENST00000329399 LINC00597Q9H2U6 94 aa17.1■□□□□ 0.33
PDLIM1-201ENST00000329399 MFSD1Q9H3U5 465 aa17.1■□□□□ 0.33
PDLIM1-201ENST00000329399 ANKZF1Q9H8Y5 726 aa17.1■□□□□ 0.33
PDLIM1-201ENST00000329399 ST7Q9NRC1 585 aa17.1■□□□□ 0.33
PDLIM1-201ENST00000329399 TMEM51Q9NW97 253 aa17.1■□□□□ 0.33
PDLIM1-201ENST00000329399 EFR3BQ9Y2G0 817 aa17.1■□□□□ 0.33
PDLIM1-201ENST00000329399 CACNA1IQ9P0X4 2223 aa17.09■□□□□ 0.33
PDLIM1-201ENST00000329399 NUP210Q8TEM1 1887 aaPredicted RBP17.09■□□□□ 0.33
PDLIM1-201ENST00000329399 TRAV19A0A0A6YYK7 116 aa17.09■□□□□ 0.33
PDLIM1-201ENST00000329399 STK25O00506 426 aa17.09■□□□□ 0.33
PDLIM1-201ENST00000329399 DPYSL4O14531 572 aa17.09■□□□□ 0.33
PDLIM1-201ENST00000329399 CHADO15335 359 aa17.09■□□□□ 0.33
PDLIM1-201ENST00000329399 SART1O43290 800 aaKnown RBP17.09■□□□□ 0.33
PDLIM1-201ENST00000329399 FBXO21O94952 628 aa17.09■□□□□ 0.33
PDLIM1-201ENST00000329399 CKMP06732 381 aa17.09■□□□□ 0.33
PDLIM1-201ENST00000329399 GLI1P08151 1106 aa17.09■□□□□ 0.33
PDLIM1-201ENST00000329399 PTPN7P35236 360 aa17.09■□□□□ 0.33
PDLIM1-201ENST00000329399 ZNF143P52747 638 aaPredicted RBP17.09■□□□□ 0.33
PDLIM1-201ENST00000329399 RPL7AP62424 266 aaKnown RBP17.09■□□□□ 0.33
PDLIM1-201ENST00000329399 PDE4CQ08493 712 aa17.09■□□□□ 0.33
PDLIM1-201ENST00000329399 C2orf54Q08AI8 447 aa17.09■□□□□ 0.33
PDLIM1-201ENST00000329399 NAA30Q147X3 362 aaPredicted RBP17.09■□□□□ 0.33
PDLIM1-201ENST00000329399 EFHC1Q5JVL4 640 aa17.09■□□□□ 0.33
PDLIM1-201ENST00000329399 ASTLQ6HA08 431 aaPredicted RBP17.09■□□□□ 0.33
PDLIM1-201ENST00000329399 CC2D1AQ6P1N0 951 aaPredicted RBP17.09■□□□□ 0.33
PDLIM1-201ENST00000329399 SCD5Q86SK9 330 aa17.09■□□□□ 0.33
PDLIM1-201ENST00000329399 PIGZQ86VD9 579 aa17.09■□□□□ 0.33
PDLIM1-201ENST00000329399 CHFRQ96EP1 664 aa17.09■□□□□ 0.33
PDLIM1-201ENST00000329399 FAM83CQ9BQN1 747 aa17.09■□□□□ 0.33
PDLIM1-201ENST00000329399 CNPY3Q9BT09 278 aa17.09■□□□□ 0.33
PDLIM1-201ENST00000329399 DDX23Q9BUQ8 820 aaKnown RBP17.09■□□□□ 0.33
PDLIM1-201ENST00000329399 HPS4Q9NQG7 708 aa17.09■□□□□ 0.33
PDLIM1-201ENST00000329399 RBM12Q9NTZ6 932 aaKnown RBP17.09■□□□□ 0.33
PDLIM1-201ENST00000329399 SMPD4Q9NXE4 827 aa17.09■□□□□ 0.33
PDLIM1-201ENST00000329399 OBP2AQ9NY56 170 aa17.09■□□□□ 0.33
PDLIM1-201ENST00000329399 FEZ2Q9UHY8 353 aaPredicted RBP17.09■□□□□ 0.33
PDLIM1-201ENST00000329399 COCHO43405 550 aa17.08■□□□□ 0.32
PDLIM1-201ENST00000329399 OLFM2O95897 454 aa17.08■□□□□ 0.32
PDLIM1-201ENST00000329399 DCNP07585 359 aaKnown RBP17.08■□□□□ 0.32
PDLIM1-201ENST00000329399 ARSAP15289 507 aa17.08■□□□□ 0.32
PDLIM1-201ENST00000329399 PSMA2P25787 234 aa17.08■□□□□ 0.32
PDLIM1-201ENST00000329399 TNFRSF8P28908 595 aa17.08■□□□□ 0.32
PDLIM1-201ENST00000329399 CHRNA3P32297 505 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms