RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 SEMA4GQ9NTN9 838 aa16.98■□□□□ 0.31
LSM1-201ENST00000311351 PCDHGC3Q9UN70 934 aa16.98■□□□□ 0.31
LSM1-201ENST00000311351 RAD54BQ9Y620 910 aa16.98■□□□□ 0.31
LSM1-201ENST00000311351 GOLGA6L7A0A1B0GV03 622 aa16.97■□□□□ 0.31
LSM1-201ENST00000311351 A0A1W2PQF6 199 aa16.97■□□□□ 0.31
LSM1-201ENST00000311351 LATS1O95835 1130 aa16.97■□□□□ 0.31
LSM1-201ENST00000311351 MBD3O95983 291 aa16.97■□□□□ 0.31
LSM1-201ENST00000311351 SLC6A4P31645 630 aa16.97■□□□□ 0.31
LSM1-201ENST00000311351 KLK7P49862 253 aa16.97■□□□□ 0.31
LSM1-201ENST00000311351 MPPE1Q53F39 396 aa16.97■□□□□ 0.31
LSM1-201ENST00000311351 USP39Q53GS9 565 aaKnown RBP16.97■□□□□ 0.31
LSM1-201ENST00000311351 FAM133BQ5BKY9 247 aaKnown RBP16.97■□□□□ 0.31
LSM1-201ENST00000311351 CCDC183Q5T5S1 534 aa16.97■□□□□ 0.31
LSM1-201ENST00000311351 ADGRF1Q5T601 910 aa16.97■□□□□ 0.31
LSM1-201ENST00000311351 NUGGCQ68CJ6 796 aa16.97■□□□□ 0.31
LSM1-201ENST00000311351 NADSYN1Q6IA69 706 aa16.97■□□□□ 0.31
LSM1-201ENST00000311351 ANKS1BQ7Z6G8 1248 aa16.97■□□□□ 0.31
LSM1-201ENST00000311351 FAM71AQ8IYT1 594 aa16.97■□□□□ 0.31
LSM1-201ENST00000311351 PGBD3Q8N328 593 aa16.97■□□□□ 0.31
LSM1-201ENST00000311351 GPR161Q8N6U8 529 aaKnown RBP16.97■□□□□ 0.31
LSM1-201ENST00000311351 OLIG1Q8TAK6 271 aa16.97■□□□□ 0.31
LSM1-201ENST00000311351 ZC3H10Q96K80 434 aaKnown RBP16.97■□□□□ 0.31
LSM1-201ENST00000311351 ANO10Q9NW15 660 aa16.97■□□□□ 0.31
LSM1-201ENST00000311351 FANCLQ9NW38 375 aa16.97■□□□□ 0.31
LSM1-201ENST00000311351 TNRC6BQ9UPQ9 1833 aaKnown RBP16.97■□□□□ 0.31
LSM1-201ENST00000311351 CKAP5Q14008 2032 aa16.97■□□□□ 0.31
LSM1-201ENST00000311351 WASH3PC4AMC7 463 aa16.96■□□□□ 0.31
LSM1-201ENST00000311351 CAPN9O14815 690 aa16.96■□□□□ 0.31
LSM1-201ENST00000311351 ACSL4O60488 711 aa16.96■□□□□ 0.31
LSM1-201ENST00000311351 LRP3O75074 770 aa16.96■□□□□ 0.31
LSM1-201ENST00000311351 MOCS2O96007 188 aaPredicted RBP16.96■□□□□ 0.31
LSM1-201ENST00000311351 ERBB2P04626 1255 aa16.96■□□□□ 0.31
LSM1-201ENST00000311351 UCHL3P15374 230 aa16.96■□□□□ 0.31
LSM1-201ENST00000311351 GABRG2P18507 467 aa16.96■□□□□ 0.31
LSM1-201ENST00000311351 LMNB2Q03252 620 aa16.96■□□□□ 0.31
LSM1-201ENST00000311351 RING1Q06587 406 aa16.96■□□□□ 0.31
LSM1-201ENST00000311351 ELF2Q15723 593 aa16.96■□□□□ 0.31
LSM1-201ENST00000311351 RSPO4Q2I0M5 234 aaPredicted RBP16.96■□□□□ 0.31
LSM1-201ENST00000311351 PTPN20Q4JDL3 420 aa16.96■□□□□ 0.31
LSM1-201ENST00000311351 PRR23CQ6ZRP0 262 aa16.96■□□□□ 0.31
LSM1-201ENST00000311351 FAM183BPQ6ZVS7 135 aa16.96■□□□□ 0.31
LSM1-201ENST00000311351 FRMD1Q8N878 549 aa16.96■□□□□ 0.31
LSM1-201ENST00000311351 SORCS1Q8WY21 1168 aa16.96■□□□□ 0.31
LSM1-201ENST00000311351 MYEOVQ96EZ4 313 aa16.96■□□□□ 0.31
LSM1-201ENST00000311351 PPP1R13BQ96KQ4 1090 aa16.96■□□□□ 0.31
LSM1-201ENST00000311351 PRICKLE1Q96MT3 831 aaPredicted RBP16.96■□□□□ 0.31
LSM1-201ENST00000311351 GABRG3Q99928 467 aa16.96■□□□□ 0.31
LSM1-201ENST00000311351 NAA15Q9BXJ9 866 aaKnown RBP16.96■□□□□ 0.31
LSM1-201ENST00000311351 GANQ9H2C0 597 aa16.96■□□□□ 0.31
LSM1-201ENST00000311351 SMOC1Q9H4F8 434 aa16.96■□□□□ 0.31
LSM1-201ENST00000311351 POPDC2Q9HBU9 364 aa16.96■□□□□ 0.31
LSM1-201ENST00000311351 CD248Q9HCU0 757 aa16.96■□□□□ 0.31
LSM1-201ENST00000311351 TMEM63CQ9P1W3 806 aa16.96■□□□□ 0.31
LSM1-201ENST00000311351 DNAH14Q0VDD8 3507 aa16.96■□□□□ 0.31
LSM1-201ENST00000311351 IRAK2O43187 625 aa16.95■□□□□ 0.3
LSM1-201ENST00000311351 GRAP2O75791 330 aa16.95■□□□□ 0.3
LSM1-201ENST00000311351 HLA-FP30511 346 aa16.95■□□□□ 0.3
LSM1-201ENST00000311351 KRT9P35527 623 aa16.95■□□□□ 0.3
LSM1-201ENST00000311351 P2RY2P41231 377 aa16.95■□□□□ 0.3
LSM1-201ENST00000311351 IL12RB1P42701 662 aa16.95■□□□□ 0.3
LSM1-201ENST00000311351 SLC11A2P49281 568 aa16.95■□□□□ 0.3
LSM1-201ENST00000311351 YWHAZP63104 245 aaKnown RBP16.95■□□□□ 0.3
LSM1-201ENST00000311351 MYL5Q02045 173 aa16.95■□□□□ 0.3
LSM1-201ENST00000311351 SF3A2Q15428 464 aaKnown RBP16.95■□□□□ 0.3
LSM1-201ENST00000311351 CSRP2Q16527 193 aa16.95■□□□□ 0.3
LSM1-201ENST00000311351 TAF3Q5VWG9 929 aa16.95■□□□□ 0.3
LSM1-201ENST00000311351 PMS2CLQ68D20 193 aa16.95■□□□□ 0.3
LSM1-201ENST00000311351 TMEM215Q68D42 235 aa16.95■□□□□ 0.3
LSM1-201ENST00000311351 SDE2Q6IQ49 451 aa16.95■□□□□ 0.3
LSM1-201ENST00000311351 UNC45BQ8IWX7 931 aa16.95■□□□□ 0.3
LSM1-201ENST00000311351 WFDC5Q8TCV5 224 aa16.95■□□□□ 0.3
LSM1-201ENST00000311351 IPO4Q8TEX9 1081 aaKnown RBP16.95■□□□□ 0.3
LSM1-201ENST00000311351 TMA16Q96EY4 203 aaKnown RBP16.95■□□□□ 0.3
LSM1-201ENST00000311351 SLC39A13Q96H72 371 aa16.95■□□□□ 0.3
LSM1-201ENST00000311351 LOXL4Q96JB6 756 aa16.95■□□□□ 0.3
LSM1-201ENST00000311351 CIPCQ9C0C6 399 aa16.95■□□□□ 0.3
LSM1-201ENST00000311351 NUCKS1Q9H1E3 243 aaKnown RBP16.95■□□□□ 0.3
LSM1-201ENST00000311351 SLC6A17Q9H1V8 727 aa16.95■□□□□ 0.3
LSM1-201ENST00000311351 LHX5Q9H2C1 402 aa16.95■□□□□ 0.3
LSM1-201ENST00000311351 CALCOCO1Q9P1Z2 691 aa16.95■□□□□ 0.3
LSM1-201ENST00000311351 XPO7Q9UIA9 1087 aaKnown RBP16.95■□□□□ 0.3
LSM1-201ENST00000311351 TLR6Q9Y2C9 796 aa16.95■□□□□ 0.3
LSM1-201ENST00000311351 STON1Q9Y6Q2 735 aa16.95■□□□□ 0.3
LSM1-201ENST00000311351 CEP192Q8TEP8 1941 aa16.95■□□□□ 0.3
LSM1-201ENST00000311351 GON4LQ3T8J9 2241 aa16.94■□□□□ 0.3
LSM1-201ENST00000311351 SPTBN2O15020 2390 aa16.94■□□□□ 0.3
LSM1-201ENST00000311351 F8VZ95 297 aa16.94■□□□□ 0.3
LSM1-201ENST00000311351 EPHB6O15197 1021 aa16.94■□□□□ 0.3
LSM1-201ENST00000311351 TBL1XO60907 577 aa16.94■□□□□ 0.3
LSM1-201ENST00000311351 TRUB2O95900 331 aaKnown RBP16.94■□□□□ 0.3
LSM1-201ENST00000311351 IGLV3-25P01717 112 aa16.94■□□□□ 0.3
LSM1-201ENST00000311351 CYP11B1P15538 503 aa16.94■□□□□ 0.3
LSM1-201ENST00000311351 NDUFV2P19404 249 aa16.94■□□□□ 0.3
LSM1-201ENST00000311351 MPLP40238 635 aa16.94■□□□□ 0.3
LSM1-201ENST00000311351 ZNF445P59923 1031 aa16.94■□□□□ 0.3
LSM1-201ENST00000311351 NNTQ13423 1086 aa16.94■□□□□ 0.3
LSM1-201ENST00000311351 PIK3R6Q5UE93 754 aa16.94■□□□□ 0.3
LSM1-201ENST00000311351 OR6B2Q6IFH4 312 aa16.94■□□□□ 0.3
LSM1-201ENST00000311351 OLFML1Q6UWY5 402 aa16.94■□□□□ 0.3
LSM1-201ENST00000311351 BEND5Q7L4P6 421 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms