RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 SLC22A1O15245 554 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 EDF1O60869 148 aaKnown RBP5.37□□□□□ -1.55
SCN1A-201ENST00000303395 FTLP02792 175 aaPredicted RBP5.37□□□□□ -1.55
SCN1A-201ENST00000303395 AKT1P31749 480 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 PDX1P52945 283 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 GPS1Q13098 491 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 RFTN1Q14699 578 aaPredicted RBP5.37□□□□□ -1.55
SCN1A-201ENST00000303395 FAM189A2Q15884 450 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 EZH2Q15910 746 aaKnown RBP5.37□□□□□ -1.55
SCN1A-201ENST00000303395 XKR3Q5GH77 459 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 TMEM63BQ5T3F8 832 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 BNIPLQ7Z465 357 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 ERI1Q8IV48 349 aaKnown RBP5.37□□□□□ -1.55
SCN1A-201ENST00000303395 ADHFE1Q8IWW8 467 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 TTLL11Q8NHH1 800 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 PIK3R3Q92569 461 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 FAM163AQ96GL9 167 aaPredicted RBP5.37□□□□□ -1.55
SCN1A-201ENST00000303395 GLS2Q9UI32 602 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 C2CD2Q9Y426 696 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 TSPAN9O75954 239 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 LARGE1O95461 756 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 MYBL2P10244 700 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 ETV6P41212 452 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 CAPZA1P52907 286 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 SLC16A1P53985 500 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 KCNK10P57789 538 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 FAM102BQ5T8I3 360 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 ACAD10Q6JQN1 1059 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 ZPBP2Q6X784 338 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 RFX8Q6ZV50 586 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 COMMD2Q86X83 199 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 ZCCHC7Q8N3Z6 543 aaKnown RBP5.37□□□□□ -1.55
SCN1A-201ENST00000303395 SLC35G2Q8TBE7 412 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 SPATA18Q8TC71 538 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 HAVCR2Q8TDQ0 301 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 MYDGFQ969H8 173 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 PPP1R36Q96LQ0 422 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 NDNQ99608 321 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 CHCHD6Q9BRQ6 235 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 ZNF577Q9BSK1 485 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 MRPL4Q9BYD3 311 aaKnown RBP5.37□□□□□ -1.55
SCN1A-201ENST00000303395 EPB41L4AQ9HCS5 686 aaPredicted RBP5.37□□□□□ -1.55
SCN1A-201ENST00000303395 SLC38A7Q9NVC3 462 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 ZNF446Q9NWS9 450 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 MAGEL2Q9UJ55 1249 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 FSCN2O14926 492 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 PLA2G6O60733 806 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 SOAT2O75908 522 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 HPGDP15428 266 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 SQLEQ14534 574 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 ARSJQ5FYB0 599 aaPredicted RBP5.37□□□□□ -1.55
SCN1A-201ENST00000303395 XKR9Q5GH70 373 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 EGFL6Q8IUX8 553 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 TRIM48Q8IWZ4 208 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 FAR1Q8WVX9 515 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 C18orf8Q96DM3 657 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 EGFL8Q99944 293 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 NEK6Q9HC98 313 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 KCNQ5Q9NR82 932 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 EHD3Q9NZN3 535 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 SAE1Q9UBE0 346 aaPredicted RBP5.37□□□□□ -1.55
SCN1A-201ENST00000303395 PCDHGB3Q9Y5G1 929 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 HSPE1-MOB4S4R3N1 261 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 RIC1Q4ADV7 1423 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 AQP12BA6NM10 295 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 ALOX15BO15296 676 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 USP1O94782 785 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 ALDH1A1P00352 501 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 PABPC1P11940 636 aaKnown RBP5.37□□□□□ -1.55
SCN1A-201ENST00000303395 FDPSP14324 419 aaKnown RBP5.37□□□□□ -1.55
SCN1A-201ENST00000303395 ITGA2P17301 1181 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 PIK3R1P27986 724 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 ADSSP30520 456 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 MAPK8P45983 427 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 CYP2J2P51589 502 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 AP3S2P59780 193 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 SULT2A1Q06520 285 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 MYBPC3Q14896 1274 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 NAIF1Q69YI7 327 aaPredicted RBP5.37□□□□□ -1.55
SCN1A-201ENST00000303395 LPCAT2Q7L5N7 544 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 SLFN11Q7Z7L1 901 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 RHPN2Q8IUC4 686 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 AQP12AQ8IXF9 295 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 NLGN1Q8N2Q7 840 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 DQX1Q8TE96 717 aaKnown RBP5.37□□□□□ -1.55
SCN1A-201ENST00000303395 DCPSQ96C86 337 aaKnown RBP5.37□□□□□ -1.55
SCN1A-201ENST00000303395 TCF7L2Q9NQB0 619 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 COMMD9Q9P000 198 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 IFT80Q9P2H3 777 aaPredicted RBP5.37□□□□□ -1.55
SCN1A-201ENST00000303395 EXTL3O43909 919 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 FLT3P36888 993 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 ARSEP51690 589 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 GFPT1Q06210 699 aaPredicted RBP5.37□□□□□ -1.55
SCN1A-201ENST00000303395 TNK2Q07912 1038 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 SPIRE1Q08AE8 756 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 NCF4Q15080 339 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 ERICH5Q6P6B1 374 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 IZUMO2Q6UXV1 221 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 GADL1Q6ZQY3 521 aa5.37□□□□□ -1.55
SCN1A-201ENST00000303395 CCDC60Q8IWA6 550 aaPredicted RBP5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms