RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 SLC38A2Q96QD8 506 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 C17orf80Q9BSJ5 609 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 RNPEPQ9H4A4 650 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 TMBIM4Q9HC24 238 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 PRDM11Q9NQV5 511 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 CYP3A7-CYP3A51PA0A087WV96 503 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 TEX51A0A1B0GUA7 166 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 LRRC53A6NM62 1247 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 FDPSP14324 419 aaKnown RBP4.95□□□□□ -1.62
CSMD3-201ENST00000297405 ZNF24P17028 368 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 CYP3A7P24462 503 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 ETV1P50549 477 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 ZNF605Q86T29 641 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 CNKSR1Q969H4 720 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 NSMCE2Q96MF7 247 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 MKNK1Q9BUB5 465 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 CYLDQ9NQC7 956 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 PDGFCQ9NRA1 345 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 PCDH10Q9P2E7 1040 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 XPR1Q9UBH6 696 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 SFMBT1Q9UHJ3 866 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 NOD1Q9Y239 953 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 AP3D1O14617 1153 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 PCDHGA12O60330 932 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 ATG7O95352 703 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 MLLT6P55198 1093 aaPredicted RBP4.95□□□□□ -1.62
CSMD3-201ENST00000297405 AKAP4Q5JQC9 854 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 CCNYL1Q8N7R7 359 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 OR5J2Q8NH18 312 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 TCTEX1D2Q8WW35 142 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 ZBED3Q96IU2 234 aaPredicted RBP4.95□□□□□ -1.62
CSMD3-201ENST00000297405 SLC13A1Q9BZW2 595 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 CAMSAP3Q9P1Y5 1249 aaPredicted RBP4.95□□□□□ -1.62
CSMD3-201ENST00000297405 SLAIN2Q9P270 581 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 DRG1Q9Y295 367 aaKnown RBP4.95□□□□□ -1.62
CSMD3-201ENST00000297405 PLXND1Q9Y4D7 1925 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 ERI2A8K979 691 aaKnown RBP4.95□□□□□ -1.62
CSMD3-201ENST00000297405 EYA2O00167 538 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 ABHD2P08910 425 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 GSTT2P0CG29 244 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 PPIBP23284 216 aaKnown RBP4.95□□□□□ -1.62
CSMD3-201ENST00000297405 MRPS10P82664 201 aaKnown RBP4.95□□□□□ -1.62
CSMD3-201ENST00000297405 BIKQ13323 160 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 ZNF829Q3KNS6 432 aaPredicted RBP4.95□□□□□ -1.62
CSMD3-201ENST00000297405 MPP5Q8N3R9 675 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 HDDC3Q8N4P3 179 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 RBM4BQ9BQ04 359 aaKnown RBP4.95□□□□□ -1.62
CSMD3-201ENST00000297405 RBM4Q9BWF3 364 aaKnown RBP4.95□□□□□ -1.62
CSMD3-201ENST00000297405 ADD3Q9UEY8 706 aaKnown RBP4.95□□□□□ -1.62
CSMD3-201ENST00000297405 SPACA6W5XKT8 324 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 KDM6AO15550 1401 aaPredicted RBP4.95□□□□□ -1.62
CSMD3-201ENST00000297405 CYP2D7A0A087X1C5 515 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 TUBAL3A6NHL2 446 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 FADS2P1A8MWK0 482 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 AP3B2Q13367 1082 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 PDK3Q15120 406 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 PRR5LQ6MZQ0 368 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 DHFR2Q86XF0 187 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 TRPV3Q8NET8 790 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 PLEKHG4BQ96PX9 1271 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 YME1L1Q96TA2 773 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 TSEN34Q9BSV6 310 aaKnown RBP4.95□□□□□ -1.62
CSMD3-201ENST00000297405 TBC1D14Q9P2M4 693 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 CKLFQ9UBR5 152 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 J3QR89 54 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 FCHO1O14526 889 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 CIAO1O76071 339 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 CAMTA2O94983 1202 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 PSMG1O95456 288 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 APRTP07741 180 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 C7P10643 843 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 C11orf57Q6ZUT1 292 aaPredicted RBP4.95□□□□□ -1.62
CSMD3-201ENST00000297405 KAT2BQ92831 832 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 ELMO2Q96JJ3 720 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 NCOA5Q9HCD5 579 aaKnown RBP4.95□□□□□ -1.62
CSMD3-201ENST00000297405 TAS2R7Q9NYW3 318 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 HEY2Q9UBP5 337 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 FARSAQ9Y285 508 aaKnown RBP4.95□□□□□ -1.62
CSMD3-201ENST00000297405 TMEM5Q9Y2B1 443 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 MAB21L2Q9Y586 359 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 TRIM43BA6NCK2 446 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 DNM1LO00429 736 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 PGK1P00558 417 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 SERPINA6P08185 405 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 FAM76BQ5HYJ3 339 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 UBXN11Q5T124 520 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 THNSL1Q8IYQ7 743 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 CDK20Q8IZL9 346 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 PHC3Q8NDX5 983 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 SLC20A1Q8WUM9 679 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 RFKQ969G6 155 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 WDR24Q96S15 920 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 CGREF1Q99674 301 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 C7orf50Q9BRJ6 194 aaKnown RBP4.95□□□□□ -1.62
CSMD3-201ENST00000297405 RBM42Q9BTD8 480 aaKnown RBP4.95□□□□□ -1.62
CSMD3-201ENST00000297405 AP1M1Q9BXS5 423 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 STK32BQ9NY57 414 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 HCFC1P51610 2035 aa4.95□□□□□ -1.62
CSMD3-201ENST00000297405 CPSF1Q10570 1443 aaKnown RBP4.95□□□□□ -1.62
CSMD3-201ENST00000297405 BBIP1A8MTZ0 92 aa4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms