RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 NPTX2P47972 431 aa12.03□□□□□ -0.48
SHROOM3-201ENST00000296043 RAB27AP51159 221 aa12.03□□□□□ -0.48
SHROOM3-201ENST00000296043 PSMD4P55036 377 aaKnown RBP12.03□□□□□ -0.48
SHROOM3-201ENST00000296043 SLC45A4Q5BKX6 768 aa12.03□□□□□ -0.48
SHROOM3-201ENST00000296043 FAM131AQ6UXB0 335 aa12.03□□□□□ -0.48
SHROOM3-201ENST00000296043 TRIP11Q15643 1979 aa12.03□□□□□ -0.48
SHROOM3-201ENST00000296043 FAM220BPB1ANY3 271 aa12.03□□□□□ -0.48
SHROOM3-201ENST00000296043 GARTP22102 1010 aa12.03□□□□□ -0.48
SHROOM3-201ENST00000296043 GSTM5P46439 218 aa12.03□□□□□ -0.48
SHROOM3-201ENST00000296043 PIGHQ14442 188 aaPredicted RBP12.03□□□□□ -0.48
SHROOM3-201ENST00000296043 NCCRP1Q6ZVX7 275 aaPredicted RBP12.03□□□□□ -0.48
SHROOM3-201ENST00000296043 CDH9Q9ULB4 789 aa12.03□□□□□ -0.48
SHROOM3-201ENST00000296043 H3BM21 787 aa12.03□□□□□ -0.48
SHROOM3-201ENST00000296043 SUPT7LO94864 414 aa12.03□□□□□ -0.48
SHROOM3-201ENST00000296043 CPA3P15088 417 aa12.03□□□□□ -0.48
SHROOM3-201ENST00000296043 PSMA3P25788 255 aa12.03□□□□□ -0.48
SHROOM3-201ENST00000296043 IDH2P48735 452 aaKnown RBP12.03□□□□□ -0.48
SHROOM3-201ENST00000296043 URB2Q14146 1524 aaKnown RBP12.03□□□□□ -0.48
SHROOM3-201ENST00000296043 SUZ12Q15022 739 aaKnown RBP12.03□□□□□ -0.48
SHROOM3-201ENST00000296043 PDK1Q15118 436 aa12.03□□□□□ -0.48
SHROOM3-201ENST00000296043 EEPD1Q7L9B9 569 aa12.03□□□□□ -0.48
SHROOM3-201ENST00000296043 TBC1D21Q8IYX1 336 aa12.03□□□□□ -0.48
SHROOM3-201ENST00000296043 THAP2Q9H0W7 228 aa12.03□□□□□ -0.48
SHROOM3-201ENST00000296043 RAPGEFL1Q9UHV5 662 aa12.03□□□□□ -0.48
SHROOM3-201ENST00000296043 SHBGP04278 402 aa12.03□□□□□ -0.48
SHROOM3-201ENST00000296043 NMT1P30419 496 aaKnown RBP12.03□□□□□ -0.48
SHROOM3-201ENST00000296043 ZNF267Q14586 743 aaPredicted RBP12.03□□□□□ -0.48
SHROOM3-201ENST00000296043 TRMT2AQ8IZ69 625 aaKnown RBP12.03□□□□□ -0.48
SHROOM3-201ENST00000296043 MRPL48Q96GC5 212 aaKnown RBP12.03□□□□□ -0.48
SHROOM3-201ENST00000296043 TRIM9Q9C026 710 aa12.03□□□□□ -0.48
SHROOM3-201ENST00000296043 SDR42E2A6NKP2 422 aa12.03□□□□□ -0.48
SHROOM3-201ENST00000296043 NFICP08651 508 aa12.03□□□□□ -0.48
SHROOM3-201ENST00000296043 MTX3Q5HYI7 312 aa12.03□□□□□ -0.48
SHROOM3-201ENST00000296043 TRNT1Q96Q11 434 aaKnown RBP12.03□□□□□ -0.48
SHROOM3-201ENST00000296043 H0Y858 1186 aa12.03□□□□□ -0.48
SHROOM3-201ENST00000296043 PPM1BO75688 479 aa12.03□□□□□ -0.48
SHROOM3-201ENST00000296043 RAB25P57735 213 aa12.03□□□□□ -0.48
SHROOM3-201ENST00000296043 ZNF544Q6NX49 715 aa12.03□□□□□ -0.48
SHROOM3-201ENST00000296043 PDXDC2PQ6P474 469 aa12.03□□□□□ -0.48
SHROOM3-201ENST00000296043 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.03□□□□□ -0.48
SHROOM3-201ENST00000296043 DSTYKQ6XUX3 929 aa12.03□□□□□ -0.48
SHROOM3-201ENST00000296043 PIK3CDO00329 1044 aa12.03□□□□□ -0.48
SHROOM3-201ENST00000296043 PHKG1Q16816 387 aa12.03□□□□□ -0.48
SHROOM3-201ENST00000296043 ZCCHC23Q6ZST2 131 aa12.03□□□□□ -0.48
SHROOM3-201ENST00000296043 COPRSQ9NQ92 184 aa12.03□□□□□ -0.48
SHROOM3-201ENST00000296043 GABBR1Q9UBS5 961 aa12.03□□□□□ -0.48
SHROOM3-201ENST00000296043 ANAPC2Q9UJX6 822 aa12.03□□□□□ -0.48
SHROOM3-201ENST00000296043 CYP2C8P10632 490 aa12.02□□□□□ -0.48
SHROOM3-201ENST00000296043 ATP2C1P98194 919 aaPredicted RBP12.02□□□□□ -0.48
SHROOM3-201ENST00000296043 AGAP9Q5VTM2 703 aa12.02□□□□□ -0.48
SHROOM3-201ENST00000296043 TMEM53Q6P2H8 277 aa12.02□□□□□ -0.48
SHROOM3-201ENST00000296043 GADL1Q6ZQY3 521 aa12.02□□□□□ -0.48
SHROOM3-201ENST00000296043 ZDHHC13Q8IUH4 622 aa12.02□□□□□ -0.48
SHROOM3-201ENST00000296043 DUOX2Q9NRD8 1548 aa12.02□□□□□ -0.48
SHROOM3-201ENST00000296043 PEX14O75381 377 aa12.02□□□□□ -0.48
SHROOM3-201ENST00000296043 NPTXRO95502 500 aa12.02□□□□□ -0.48
SHROOM3-201ENST00000296043 EPB42P16452 691 aa12.02□□□□□ -0.48
SHROOM3-201ENST00000296043 DDB1Q16531 1140 aa12.02□□□□□ -0.48
SHROOM3-201ENST00000296043 CIR1Q86X95 450 aaPredicted RBP12.02□□□□□ -0.48
SHROOM3-201ENST00000296043 IQCF2Q8IXL9 164 aa12.02□□□□□ -0.48
SHROOM3-201ENST00000296043 EMC1Q8N766 993 aa12.02□□□□□ -0.48
SHROOM3-201ENST00000296043 B3GALNT2Q8NCR0 500 aa12.02□□□□□ -0.48
SHROOM3-201ENST00000296043 GPATCH1Q9BRR8 931 aaKnown RBP12.02□□□□□ -0.48
SHROOM3-201ENST00000296043 CCDC154A6NI56 674 aa12.02□□□□□ -0.48
SHROOM3-201ENST00000296043 H7C0S8 307 aa12.02□□□□□ -0.48
SHROOM3-201ENST00000296043 GABBR2O75899 941 aa12.02□□□□□ -0.48
SHROOM3-201ENST00000296043 ERVK-9P63128 1117 aa12.02□□□□□ -0.48
SHROOM3-201ENST00000296043 SPAG16Q8N0X2 631 aa12.02□□□□□ -0.48
SHROOM3-201ENST00000296043 TTC29Q8NA56 475 aaPredicted RBP12.02□□□□□ -0.48
SHROOM3-201ENST00000296043 BHMTQ93088 406 aa12.02□□□□□ -0.48
SHROOM3-201ENST00000296043 MYLPFQ96A32 169 aa12.02□□□□□ -0.48
SHROOM3-201ENST00000296043 TUBGCP5Q96RT8 1024 aa12.02□□□□□ -0.48
SHROOM3-201ENST00000296043 NCKAP5LQ9HCH0 1330 aa12.02□□□□□ -0.48
SHROOM3-201ENST00000296043 PTCH1Q13635 1447 aa12.02□□□□□ -0.48
SHROOM3-201ENST00000296043 ENOSF1Q7L5Y1 443 aa12.02□□□□□ -0.49
SHROOM3-201ENST00000296043 GALNT15Q8N3T1 639 aa12.02□□□□□ -0.49
SHROOM3-201ENST00000296043 PJA1Q8NG27 643 aa12.02□□□□□ -0.49
SHROOM3-201ENST00000296043 CHST12Q9NRB3 414 aa12.02□□□□□ -0.49
SHROOM3-201ENST00000296043 RGS18Q9NS28 235 aa12.02□□□□□ -0.49
SHROOM3-201ENST00000296043 I3L521 148 aa12.02□□□□□ -0.49
SHROOM3-201ENST00000296043 AP5Z1O43299 807 aa12.02□□□□□ -0.49
SHROOM3-201ENST00000296043 CPNE3O75131 537 aaKnown RBP12.02□□□□□ -0.49
SHROOM3-201ENST00000296043 HIST1H2AGP0C0S8 130 aaPredicted RBP12.02□□□□□ -0.49
SHROOM3-201ENST00000296043 HIST1H2ADP20671 130 aa12.02□□□□□ -0.49
SHROOM3-201ENST00000296043 ALDH4A1P30038 563 aa12.02□□□□□ -0.49
SHROOM3-201ENST00000296043 COLGALT2Q8IYK4 626 aa12.02□□□□□ -0.49
SHROOM3-201ENST00000296043 DLG3Q92796 817 aa12.02□□□□□ -0.49
SHROOM3-201ENST00000296043 HIST1H2AHQ96KK5 128 aa12.02□□□□□ -0.49
SHROOM3-201ENST00000296043 HIST1H2AJQ99878 128 aa12.02□□□□□ -0.49
SHROOM3-201ENST00000296043 H2AFJQ9BTM1 129 aa12.02□□□□□ -0.49
SHROOM3-201ENST00000296043 SEC31BQ9NQW1 1179 aa12.02□□□□□ -0.49
SHROOM3-201ENST00000296043 EDC4Q6P2E9 1401 aaKnown RBP12.02□□□□□ -0.49
SHROOM3-201ENST00000296043 CIAO1O76071 339 aa12.02□□□□□ -0.49
SHROOM3-201ENST00000296043 MSH3P20585 1137 aa12.02□□□□□ -0.49
SHROOM3-201ENST00000296043 PTK6Q13882 451 aa12.02□□□□□ -0.49
SHROOM3-201ENST00000296043 ALYREFQ86V81 257 aaKnown RBP12.02□□□□□ -0.49
SHROOM3-201ENST00000296043 GREM2Q9H772 168 aa12.02□□□□□ -0.49
SHROOM3-201ENST00000296043 SIK3Q9Y2K2 1263 aa12.02□□□□□ -0.49
SHROOM3-201ENST00000296043 ANKARQ7Z5J8 1434 aa12.02□□□□□ -0.49
SHROOM3-201ENST00000296043 CLTBP09497 229 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms