RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 ZACNQ401N2 412 aa10.68□□□□□ -0.7
UPF3B-201ENST00000276201 LRRC23Q53EV4 343 aaPredicted RBP10.68□□□□□ -0.7
UPF3B-201ENST00000276201 ATG16L1Q676U5 607 aa10.68□□□□□ -0.7
UPF3B-201ENST00000276201 LRRC6Q86X45 466 aa10.68□□□□□ -0.7
UPF3B-201ENST00000276201 TMEM143Q96AN5 459 aa10.68□□□□□ -0.7
UPF3B-201ENST00000276201 WWP1Q9H0M0 922 aa10.68□□□□□ -0.7
UPF3B-201ENST00000276201 YBX2Q9Y2T7 364 aaKnown RBP10.68□□□□□ -0.7
UPF3B-201ENST00000276201 SZT2Q5T011 3432 aa10.68□□□□□ -0.7
UPF3B-201ENST00000276201 GOLGA8IPA6NC78 632 aa10.68□□□□□ -0.7
UPF3B-201ENST00000276201 GOLGA8JA6NMD2 632 aa10.68□□□□□ -0.7
UPF3B-201ENST00000276201 B2RBV5 119 aa10.68□□□□□ -0.7
UPF3B-201ENST00000276201 PEX1O43933 1283 aa10.68□□□□□ -0.7
UPF3B-201ENST00000276201 ZSCAN5DPP0CG00 497 aa10.68□□□□□ -0.7
UPF3B-201ENST00000276201 MMP8P22894 467 aa10.68□□□□□ -0.7
UPF3B-201ENST00000276201 TBXAS1P24557 533 aaPredicted RBP10.68□□□□□ -0.7
UPF3B-201ENST00000276201 STIP1P31948 543 aaKnown RBP10.68□□□□□ -0.7
UPF3B-201ENST00000276201 WDR44Q5JSH3 913 aa10.68□□□□□ -0.7
UPF3B-201ENST00000276201 SLC39A4Q6P5W5 647 aa10.68□□□□□ -0.7
UPF3B-201ENST00000276201 C3orf62Q6ZUJ4 267 aa10.68□□□□□ -0.7
UPF3B-201ENST00000276201 PDSS2Q86YH6 399 aa10.68□□□□□ -0.7
UPF3B-201ENST00000276201 EXOC8Q8IYI6 725 aa10.68□□□□□ -0.7
UPF3B-201ENST00000276201 UBR7Q8N806 425 aa10.68□□□□□ -0.7
UPF3B-201ENST00000276201 NLRP7Q8WX94 980 aa10.68□□□□□ -0.7
UPF3B-201ENST00000276201 JADE3Q92613 823 aa10.68□□□□□ -0.7
UPF3B-201ENST00000276201 WDR83Q9BRX9 315 aaKnown RBP10.68□□□□□ -0.7
UPF3B-201ENST00000276201 CCDC106Q9BWC9 280 aa10.68□□□□□ -0.7
UPF3B-201ENST00000276201 ZNF518BQ9C0D4 1074 aa10.68□□□□□ -0.7
UPF3B-201ENST00000276201 SIRPGQ9P1W8 387 aa10.68□□□□□ -0.7
UPF3B-201ENST00000276201 CIDEBQ9UHD4 219 aa10.68□□□□□ -0.7
UPF3B-201ENST00000276201 GAS2O43903 313 aaKnown RBP10.67□□□□□ -0.7
UPF3B-201ENST00000276201 AMHP03971 560 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 C4BPAP04003 597 aaKnown RBP10.67□□□□□ -0.7
UPF3B-201ENST00000276201 MYL2P10916 166 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 DARSP14868 501 aaKnown RBP10.67□□□□□ -0.7
UPF3B-201ENST00000276201 MYOGP15173 224 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 AOC1P19801 751 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 AMPD1P23109 780 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 ZNF132P52740 706 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 PEX3P56589 373 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 IRX4P78413 519 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 BTKQ06187 659 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 OVGP1Q12889 678 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 CDC16Q13042 620 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 RAB30Q15771 203 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 RIPOR1Q6ZS17 1223 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 BBS12Q6ZW61 710 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 Q7L0L9 218 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 LCA5Q86VQ0 697 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 RHPN2Q8IUC4 686 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 CCNJLQ8IV13 435 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 ULK2Q8IYT8 1036 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 PRPF31Q8WWY3 499 aaKnown RBP10.67□□□□□ -0.7
UPF3B-201ENST00000276201 BTBD9Q96Q07 612 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 PANX3Q96QZ0 392 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 NDNQ99608 321 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 C11orf70Q9BRQ4 267 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 FBXO6Q9NRD1 293 aaPredicted RBP10.67□□□□□ -0.7
UPF3B-201ENST00000276201 PCDHA11Q9Y5I1 949 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 GMEB1Q9Y692 573 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 STYXL1Q9Y6J8 313 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 WASF2Q9Y6W5 498 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 A0A087WZ62 844 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 FAM170AA1A519 330 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 C3orf70A6NLC5 250 aaPredicted RBP10.67□□□□□ -0.7
UPF3B-201ENST00000276201 BIRC5O15392 142 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 EXTL3O43909 919 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 CCNT2O60583 730 aaKnown RBP10.67□□□□□ -0.7
UPF3B-201ENST00000276201 DGAT1O75907 488 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 SERPINA6P08185 405 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 EIF4BP23588 611 aaKnown RBP10.67□□□□□ -0.7
UPF3B-201ENST00000276201 CDH5P33151 784 aaPredicted RBP10.67□□□□□ -0.7
UPF3B-201ENST00000276201 NPTX2P47972 431 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 NOP14P78316 857 aaKnown RBP10.67□□□□□ -0.7
UPF3B-201ENST00000276201 LAMTOR4Q0VGL1 99 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 WASHC5Q12768 1159 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 ASPHQ12797 758 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 CUL2Q13617 745 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 FNBP1LQ5T0N5 605 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 STXBP5Q5T5C0 1151 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 IZUMO2Q6UXV1 221 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 RTN4RL1Q86UN2 441 aaPredicted RBP10.67□□□□□ -0.7
UPF3B-201ENST00000276201 THNSL1Q8IYQ7 743 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 PDIK1LQ8N165 341 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 FAM172AQ8WUF8 416 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 CCDC127Q96BQ5 260 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 TIFAQ96CG3 184 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 NLRP4Q96MN2 994 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 FAM161BQ96MY7 647 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 FDXACB1Q9BRP7 624 aaPredicted RBP10.67□□□□□ -0.7
UPF3B-201ENST00000276201 NMUR2Q9GZQ4 415 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 NKX2-4Q9H2Z4 354 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 TTYH1Q9H313 450 aaPredicted RBP10.67□□□□□ -0.7
UPF3B-201ENST00000276201 TOPORSQ9NS56 1045 aaPredicted RBP10.67□□□□□ -0.7
UPF3B-201ENST00000276201 ST3GAL5Q9UNP4 418 aa10.67□□□□□ -0.7
UPF3B-201ENST00000276201 I3L4J1 428 aa10.66□□□□□ -0.7
UPF3B-201ENST00000276201 ENPP3O14638 875 aa10.66□□□□□ -0.7
UPF3B-201ENST00000276201 CASQ2O14958 399 aaPredicted RBP10.66□□□□□ -0.7
UPF3B-201ENST00000276201 MGEA5O60502 916 aa10.66□□□□□ -0.7
UPF3B-201ENST00000276201 SNNO75324 88 aaPredicted RBP10.66□□□□□ -0.7
UPF3B-201ENST00000276201 GJB5O95377 273 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms