RNA–Protein interactions for RNA: ENST00000266546.10

CLSTN3-201, Transcript of calsyntenin 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,185 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-201ENST00000266546 RPS6KA3P51812 740 aa11.87□□□□□ -0.51
CLSTN3-201ENST00000266546 ARHGAP1Q07960 439 aa11.87□□□□□ -0.51
CLSTN3-201ENST00000266546 SLC1A5Q15758 541 aa11.87□□□□□ -0.51
CLSTN3-201ENST00000266546 SMYD5Q6GMV2 418 aa11.87□□□□□ -0.51
CLSTN3-201ENST00000266546 ISLR2Q6UXK2 745 aa11.87□□□□□ -0.51
CLSTN3-201ENST00000266546 BNC2Q6ZN30 1099 aaPredicted RBP11.87□□□□□ -0.51
CLSTN3-201ENST00000266546 MTMR12Q9C0I1 747 aa11.87□□□□□ -0.51
CLSTN3-201ENST00000266546 THAP1Q9NVV9 213 aa11.87□□□□□ -0.51
CLSTN3-201ENST00000266546 PHIPQ8WWQ0 1821 aa11.87□□□□□ -0.51
CLSTN3-201ENST00000266546 SMIM31A0A1B0GVY4 71 aa11.87□□□□□ -0.51
CLSTN3-201ENST00000266546 E9PBE3 544 aa11.87□□□□□ -0.51
CLSTN3-201ENST00000266546 KDM1AO60341 852 aa11.87□□□□□ -0.51
CLSTN3-201ENST00000266546 KLHL41O60662 606 aa11.87□□□□□ -0.51
CLSTN3-201ENST00000266546 GRK2P25098 689 aa11.87□□□□□ -0.51
CLSTN3-201ENST00000266546 ADARP55265 1226 aaKnown RBP11.87□□□□□ -0.51
CLSTN3-201ENST00000266546 KBTBD12Q3ZCT8 623 aa11.87□□□□□ -0.51
CLSTN3-201ENST00000266546 PDPK2PQ6A1A2 396 aa11.87□□□□□ -0.51
CLSTN3-201ENST00000266546 RYBPQ8N488 228 aaPredicted RBP11.87□□□□□ -0.51
CLSTN3-201ENST00000266546 ZFRQ96KR1 1074 aaKnown RBP11.87□□□□□ -0.51
CLSTN3-201ENST00000266546 SNX5Q9Y5X3 404 aa11.87□□□□□ -0.51
CLSTN3-201ENST00000266546 ARFGEF1Q9Y6D6 1849 aa11.87□□□□□ -0.51
CLSTN3-201ENST00000266546 CABYRO75952 493 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 ZACNQ401N2 412 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 SLC27A1Q6PCB7 646 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 B3GNT6Q6ZMB0 384 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 FAM84AQ96KN4 292 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 GLT1D1Q96MS3 346 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 TSPAN18Q96SJ8 248 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 PRPF18Q99633 342 aaKnown RBP11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 MTIF3Q9H2K0 278 aaKnown RBP11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 PKD2L2Q9NZM6 624 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 SMIM35A0A1B0GVV1 85 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 PRPF4O43172 522 aaKnown RBP eCLIP11.86□□□□□ -0.512e-6■■■□□ 19
CLSTN3-201ENST00000266546 LIASO43766 372 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 CSDE1O75534 798 aaKnown RBP11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 STMN1P16949 149 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 SP3Q02447 781 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 TMEM62Q0P6H9 643 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 SPRED3Q2MJR0 410 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 TTC33Q6PID6 262 aaPredicted RBP11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 ZCCHC23Q6ZST2 131 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 EXT2Q93063 718 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 AGAP3Q96P47 875 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 ZNF518BQ9C0D4 1074 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 ILKAPQ9H0C8 392 aaPredicted RBP11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 TASP1Q9H6P5 420 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 SOCS7O14512 581 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 MSCO60682 206 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 CALCAP01258 141 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 RALBP11234 206 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 FOXN2P32314 431 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 DCTN2Q13561 401 aaKnown RBP11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 DHDDSQ86SQ9 333 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 DDHD1Q8NEL9 900 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 RFWD2Q8NHY2 731 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 EMID1Q96A84 441 aaPredicted RBP11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 PCDHB18PQ96TA0 734 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 CCDC90BQ9GZT6 254 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 LGALS13Q9UHV8 139 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 ITGA11Q9UKX5 1188 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 R3HDM2Q9Y2K5 976 aaKnown RBP11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 ATP8B3O60423 1300 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 TTC36A6NLP5 189 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 GPR182O15218 404 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 TPP2P29144 1249 aaPredicted RBP11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 GJA5P36382 358 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 CHN2P52757 468 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 SLC25A3Q00325 362 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 SLC12A1Q13621 1099 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 KIZQ2M2Z5 673 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 ATP13A4Q4VNC1 1196 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 TSHZ1Q6ZSZ6 1077 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 GPR141Q7Z602 305 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 ULK2Q8IYT8 1036 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 APBB2Q92870 758 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 GRIP2Q9C0E4 1043 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 NRDE2Q9H7Z3 1164 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 EFCAB1Q9HAE3 211 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 LRRC4CQ9HCJ2 640 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 SUN2Q9UH99 717 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 DCDC2Q9UHG0 476 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 CDYLQ9Y232 598 aa11.86□□□□□ -0.51
CLSTN3-201ENST00000266546 ALOX15BO15296 676 aa11.85□□□□□ -0.51
CLSTN3-201ENST00000266546 PEX11AO75192 247 aa11.85□□□□□ -0.51
CLSTN3-201ENST00000266546 DUSP11O75319 330 aaKnown RBP11.85□□□□□ -0.51
CLSTN3-201ENST00000266546 ARIH2O95376 493 aa11.85□□□□□ -0.51
CLSTN3-201ENST00000266546 POLBP06746 335 aa11.85□□□□□ -0.51
CLSTN3-201ENST00000266546 LYNP07948 512 aa11.85□□□□□ -0.51
CLSTN3-201ENST00000266546 BST1Q10588 318 aa11.85□□□□□ -0.51
CLSTN3-201ENST00000266546 TARBP2Q15633 366 aaKnown RBP11.85□□□□□ -0.51
CLSTN3-201ENST00000266546 PPP1R15BQ5SWA1 713 aa11.85□□□□□ -0.51
CLSTN3-201ENST00000266546 FAM117BQ6P1L5 589 aa11.85□□□□□ -0.51
CLSTN3-201ENST00000266546 C4orf22Q6V702 233 aa11.85□□□□□ -0.51
CLSTN3-201ENST00000266546 SIX6OS1Q8N1H7 587 aa11.85□□□□□ -0.51
CLSTN3-201ENST00000266546 SH3TC2Q8TF17 1288 aa11.85□□□□□ -0.51
CLSTN3-201ENST00000266546 ZNF606Q8WXB4 792 aa11.85□□□□□ -0.51
CLSTN3-201ENST00000266546 MS4A4AQ96JQ5 239 aa11.85□□□□□ -0.51
CLSTN3-201ENST00000266546 FBXL18Q96ME1 805 aa11.85□□□□□ -0.51
CLSTN3-201ENST00000266546 ACSS3Q9H6R3 686 aa11.85□□□□□ -0.51
CLSTN3-201ENST00000266546 PLEKHA5Q9HAU0 1116 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms