RNA–Protein interactions for RNA: ENST00000264883.7

NUP54-201, Transcript of nucleoporin 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP54, Length 2,367 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-201ENST00000264883 SPOCD1Q6ZMY3 1216 aa13.52□□□□□ -0.24
NUP54-201ENST00000264883 WDR75Q8IWA0 830 aaKnown RBP13.52□□□□□ -0.24
NUP54-201ENST00000264883 CMTM5Q96DZ9 223 aa13.52□□□□□ -0.24
NUP54-201ENST00000264883 NRDE2Q9H7Z3 1164 aa13.52□□□□□ -0.24
NUP54-201ENST00000264883 SOBPA7XYQ1 873 aa13.52□□□□□ -0.25
NUP54-201ENST00000264883 K7EPI3 171 aa13.52□□□□□ -0.25
NUP54-201ENST00000264883 EXTL3O43909 919 aa13.52□□□□□ -0.25
NUP54-201ENST00000264883 SIN3BO75182 1162 aa13.52□□□□□ -0.25
NUP54-201ENST00000264883 CALCAP01258 141 aa13.52□□□□□ -0.25
NUP54-201ENST00000264883 YBX3P16989 372 aaKnown RBP eCLIP13.52□□□□□ -0.259e-8■■■■□ 24.8
NUP54-201ENST00000264883 GNA15P30679 374 aa13.52□□□□□ -0.25
NUP54-201ENST00000264883 C21orf59P57076 290 aa13.52□□□□□ -0.25
NUP54-201ENST00000264883 STX3Q13277 289 aa13.52□□□□□ -0.25
NUP54-201ENST00000264883 TBC1D10BQ4KMP7 808 aaPredicted RBP13.52□□□□□ -0.25
NUP54-201ENST00000264883 NIPAL1Q6NVV3 410 aa13.52□□□□□ -0.25
NUP54-201ENST00000264883 NLRP7Q8WX94 980 aa13.52□□□□□ -0.25
NUP54-201ENST00000264883 CPT1BQ92523 772 aa13.52□□□□□ -0.25
NUP54-201ENST00000264883 PLEKHA8Q96JA3 519 aa13.52□□□□□ -0.25
NUP54-201ENST00000264883 IFT122Q9HBG6 1241 aa13.52□□□□□ -0.25
NUP54-201ENST00000264883 RIMS3Q9UJD0 308 aa13.52□□□□□ -0.25
NUP54-201ENST00000264883 TRIM49D1C9J1S8 452 aa13.51□□□□□ -0.25
NUP54-201ENST00000264883 E7ESA3 106 aa13.51□□□□□ -0.25
NUP54-201ENST00000264883 GOLGA8TH3BQL2 631 aa13.51□□□□□ -0.25
NUP54-201ENST00000264883 FOXD2O60548 495 aaPredicted RBP13.51□□□□□ -0.25
NUP54-201ENST00000264883 LSM8O95777 96 aaKnown RBP13.51□□□□□ -0.25
NUP54-201ENST00000264883 ACO1P21399 889 aaKnown RBP13.51□□□□□ -0.25
NUP54-201ENST00000264883 S100A1P23297 94 aa13.51□□□□□ -0.25
NUP54-201ENST00000264883 CAP2P40123 477 aa13.51□□□□□ -0.25
NUP54-201ENST00000264883 PEX6Q13608 980 aa13.51□□□□□ -0.25
NUP54-201ENST00000264883 CUL2Q13617 745 aa13.51□□□□□ -0.25
NUP54-201ENST00000264883 PDE1CQ14123 709 aaPredicted RBP13.51□□□□□ -0.25
NUP54-201ENST00000264883 PIGHQ14442 188 aaPredicted RBP13.51□□□□□ -0.25
NUP54-201ENST00000264883 ATP13A4Q4VNC1 1196 aa13.51□□□□□ -0.25
NUP54-201ENST00000264883 DCAF6Q58WW2 860 aa13.51□□□□□ -0.25
NUP54-201ENST00000264883 TTC39BQ5VTQ0 682 aaPredicted RBP13.51□□□□□ -0.25
NUP54-201ENST00000264883 SLC39A4Q6P5W5 647 aa13.51□□□□□ -0.25
NUP54-201ENST00000264883 GPC2Q8N158 579 aa13.51□□□□□ -0.25
NUP54-201ENST00000264883 NAT8LQ8N9F0 302 aa13.51□□□□□ -0.25
NUP54-201ENST00000264883 HSPH1Q92598 858 aa13.51□□□□□ -0.25
NUP54-201ENST00000264883 ZNF512Q96ME7 567 aaPredicted RBP13.51□□□□□ -0.25
NUP54-201ENST00000264883 DCUN1D5Q9BTE7 237 aa13.51□□□□□ -0.25
NUP54-201ENST00000264883 INO80BQ9C086 356 aaPredicted RBP13.51□□□□□ -0.25
NUP54-201ENST00000264883 COPS7BQ9H9Q2 264 aaPredicted RBP13.51□□□□□ -0.25
NUP54-201ENST00000264883 XAB2Q9HCS7 855 aaKnown RBP13.51□□□□□ -0.25
NUP54-201ENST00000264883 GPRC5CQ9NQ84 441 aa13.51□□□□□ -0.25
NUP54-201ENST00000264883 hCG_1818297A0A087WSY0 165 aa13.51□□□□□ -0.25
NUP54-201ENST00000264883 LOC100653049A0A140TA62 436 aa13.51□□□□□ -0.25
NUP54-201ENST00000264883 TCRBV9S1A1TA0A576 114 aa13.51□□□□□ -0.25
NUP54-201ENST00000264883 TMEM191CA6NGB0 347 aa13.51□□□□□ -0.25
NUP54-201ENST00000264883 HNRNPDLO14979 420 aaKnown RBP13.51□□□□□ -0.25
NUP54-201ENST00000264883 NDUFB5O43674 189 aa13.51□□□□□ -0.25
NUP54-201ENST00000264883 KRT34O76011 436 aa13.51□□□□□ -0.25
NUP54-201ENST00000264883 BAIAP3O94812 1187 aa13.51□□□□□ -0.25
NUP54-201ENST00000264883 ZBTB11O95625 1053 aaPredicted RBP13.51□□□□□ -0.25
NUP54-201ENST00000264883 HLA-DRAP01903 254 aa13.51□□□□□ -0.25
NUP54-201ENST00000264883 TMEM191BP0C7N4 346 aa13.51□□□□□ -0.25
NUP54-201ENST00000264883 DSG3P32926 999 aa13.51□□□□□ -0.25
NUP54-201ENST00000264883 SEPT6Q14141 434 aa13.51□□□□□ -0.25
NUP54-201ENST00000264883 MFSD7Q6UXD7 560 aa13.51□□□□□ -0.25
NUP54-201ENST00000264883 POLNQ7Z5Q5 900 aa13.51□□□□□ -0.25
NUP54-201ENST00000264883 PDIK1LQ8N165 341 aa13.51□□□□□ -0.25
NUP54-201ENST00000264883 TAB3Q8N5C8 712 aaPredicted RBP13.51□□□□□ -0.25
NUP54-201ENST00000264883 NIPA2Q8N8Q9 360 aa13.51□□□□□ -0.25
NUP54-201ENST00000264883 MCPH1Q8NEM0 835 aa13.51□□□□□ -0.25
NUP54-201ENST00000264883 APBB2Q92870 758 aa13.51□□□□□ -0.25
NUP54-201ENST00000264883 SLC13A1Q9BZW2 595 aa13.51□□□□□ -0.25
NUP54-201ENST00000264883 THAP1Q9NVV9 213 aa13.51□□□□□ -0.25
NUP54-201ENST00000264883 GPRC5DQ9NZD1 345 aa13.51□□□□□ -0.25
NUP54-201ENST00000264883 EBF1Q9UH73 591 aa13.51□□□□□ -0.25
NUP54-201ENST00000264883 HACL1Q9UJ83 578 aa13.51□□□□□ -0.25
NUP54-201ENST00000264883 SCAF8Q9UPN6 1271 aaKnown RBP13.51□□□□□ -0.25
NUP54-201ENST00000264883 FAM189A1O60320 539 aa13.5□□□□□ -0.25
NUP54-201ENST00000264883 SPAG6O75602 509 aa13.5□□□□□ -0.25
NUP54-201ENST00000264883 H6PDO95479 791 aa13.5□□□□□ -0.25
NUP54-201ENST00000264883 WEE2P0C1S8 567 aa13.5□□□□□ -0.25
NUP54-201ENST00000264883 L1CAMP32004 1257 aa13.5□□□□□ -0.25
NUP54-201ENST00000264883 YWHAGP61981 247 aaKnown RBP eCLIP13.5□□□□□ -0.25
NUP54-201ENST00000264883 MRPS22P82650 360 aaKnown RBP13.5□□□□□ -0.25
NUP54-201ENST00000264883 MRPS5P82675 430 aaKnown RBP13.5□□□□□ -0.25
NUP54-201ENST00000264883 ATP1A4Q13733 1029 aa13.5□□□□□ -0.25
NUP54-201ENST00000264883 DEPDC1Q5TB30 811 aa13.5□□□□□ -0.25
NUP54-201ENST00000264883 OGFOD2Q6N063 350 aa13.5□□□□□ -0.25
NUP54-201ENST00000264883 C16orf87Q6PH81 154 aa13.5□□□□□ -0.25
NUP54-201ENST00000264883 ZCCHC23Q6ZST2 131 aa13.5□□□□□ -0.25
NUP54-201ENST00000264883 FRMD7Q6ZUT3 714 aa13.5□□□□□ -0.25
NUP54-201ENST00000264883 CLVS1Q8IUQ0 354 aaPredicted RBP13.5□□□□□ -0.25
NUP54-201ENST00000264883 RNF169Q8NCN4 708 aa13.5□□□□□ -0.25
NUP54-201ENST00000264883 SLC35B2Q8TB61 432 aa13.5□□□□□ -0.25
NUP54-201ENST00000264883 ACER1Q8TDN7 264 aa13.5□□□□□ -0.25
NUP54-201ENST00000264883 TFB1MQ8WVM0 346 aaKnown RBP13.5□□□□□ -0.25
NUP54-201ENST00000264883 THAP11Q96EK4 314 aa13.5□□□□□ -0.25
NUP54-201ENST00000264883 PI4K2AQ9BTU6 479 aa13.5□□□□□ -0.25
NUP54-201ENST00000264883 CCPG1Q9ULG6 757 aa13.5□□□□□ -0.25
NUP54-201ENST00000264883 ARHGAP26Q9UNA1 814 aa13.5□□□□□ -0.25
NUP54-201ENST00000264883 GIT1Q9Y2X7 761 aa13.5□□□□□ -0.25
NUP54-201ENST00000264883 PCDHB4Q9Y5E5 795 aa13.5□□□□□ -0.25
NUP54-201ENST00000264883 FAM155BO75949 473 aa13.5□□□□□ -0.25
NUP54-201ENST00000264883 C4BPAP04003 597 aaKnown RBP13.5□□□□□ -0.25
NUP54-201ENST00000264883 MMP8P22894 467 aa13.5□□□□□ -0.25
NUP54-201ENST00000264883 NDST2P52849 883 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms