RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 MYO1HQ8N1T3 1032 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 LZTR1Q8N653 840 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 B4GALNT2Q8NHY0 566 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 CPNE1Q99829 537 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 SNTG2Q9NY99 539 aa11.03□□□□□ -0.64
CD44-201ENST00000263398 H2AFY2Q9P0M6 372 aaPredicted RBP11.03□□□□□ -0.64
CD44-201ENST00000263398 WDR27A2RRH5 827 aa11.02□□□□□ -0.64
CD44-201ENST00000263398 RNF103O00237 685 aa11.02□□□□□ -0.64
CD44-201ENST00000263398 PLA2G6O60733 806 aa11.02□□□□□ -0.64
CD44-201ENST00000263398 MAPK1P28482 360 aa11.02□□□□□ -0.64
CD44-201ENST00000263398 TMED10P49755 219 aaKnown RBP11.02□□□□□ -0.64
CD44-201ENST00000263398 RAD23AP54725 363 aa11.02□□□□□ -0.64
CD44-201ENST00000263398 NAB1Q13506 487 aa11.02□□□□□ -0.64
CD44-201ENST00000263398 PAN2Q504Q3 1202 aaKnown RBP11.02□□□□□ -0.64
CD44-201ENST00000263398 SLC27A1Q6PCB7 646 aa11.02□□□□□ -0.64
CD44-201ENST00000263398 RNF180Q86T96 592 aa11.02□□□□□ -0.64
CD44-201ENST00000263398 SCUBE3Q8IX30 993 aa11.02□□□□□ -0.64
CD44-201ENST00000263398 KAT2BQ92831 832 aa11.02□□□□□ -0.64
CD44-201ENST00000263398 VAT1Q99536 393 aa11.02□□□□□ -0.64
CD44-201ENST00000263398 SPATA16Q9BXB7 569 aa11.02□□□□□ -0.64
CD44-201ENST00000263398 DDX43Q9NXZ2 648 aaKnown RBP11.02□□□□□ -0.64
CD44-201ENST00000263398 RGPD8O14715 1765 aaPredicted RBP11.02□□□□□ -0.64
CD44-201ENST00000263398 NKRFO15226 690 aaKnown RBP eCLIP11.02□□□□□ -0.64
CD44-201ENST00000263398 GJB6O95452 261 aa11.02□□□□□ -0.64
CD44-201ENST00000263398 RBL1P28749 1068 aa11.02□□□□□ -0.64
CD44-201ENST00000263398 ALDH7A1P49419 539 aaKnown RBP11.02□□□□□ -0.64
CD44-201ENST00000263398 ADIGQ0VDE8 80 aa11.02□□□□□ -0.64
CD44-201ENST00000263398 EFEMP1Q12805 493 aa11.02□□□□□ -0.64
CD44-201ENST00000263398 LY6KQ17RY6 165 aa11.02□□□□□ -0.64
CD44-201ENST00000263398 DUPD1Q68J44 220 aa11.02□□□□□ -0.64
CD44-201ENST00000263398 YAF2Q8IY57 180 aa11.02□□□□□ -0.64
CD44-201ENST00000263398 TMEM169Q96HH4 297 aa11.02□□□□□ -0.64
CD44-201ENST00000263398 MRIQ9BWK5 157 aa11.02□□□□□ -0.64
CD44-201ENST00000263398 KCNK4Q9NYG8 393 aa11.02□□□□□ -0.64
CD44-201ENST00000263398 STARD13Q9Y3M8 1113 aa11.02□□□□□ -0.64
CD44-201ENST00000263398 SLC12A8A0AV02 714 aa11.02□□□□□ -0.65
CD44-201ENST00000263398 NCF1BA6NI72 391 aaPredicted RBP11.02□□□□□ -0.65
CD44-201ENST00000263398 SIGLEC16A6NMB1 481 aa11.02□□□□□ -0.65
CD44-201ENST00000263398 NCF1CA8MVU1 366 aaPredicted RBP11.02□□□□□ -0.65
CD44-201ENST00000263398 F8W810 466 aa11.02□□□□□ -0.65
CD44-201ENST00000263398 ARIH2O95376 493 aa11.02□□□□□ -0.65
CD44-201ENST00000263398 SERPINF2P08697 491 aa11.02□□□□□ -0.65
CD44-201ENST00000263398 ZSCAN5DPP0CG00 497 aa11.02□□□□□ -0.65
CD44-201ENST00000263398 NCF1P14598 390 aaPredicted RBP11.02□□□□□ -0.65
CD44-201ENST00000263398 CRABP2P29373 138 aa11.02□□□□□ -0.65
CD44-201ENST00000263398 SOAT1P35610 550 aa11.02□□□□□ -0.65
CD44-201ENST00000263398 NME5P56597 212 aa11.02□□□□□ -0.65
CD44-201ENST00000263398 R3HDM1Q15032 1099 aaKnown RBP11.02□□□□□ -0.65
CD44-201ENST00000263398 AADACL2Q6P093 401 aa11.02□□□□□ -0.65
CD44-201ENST00000263398 PTAR1Q7Z6K3 402 aaPredicted RBP11.02□□□□□ -0.65
CD44-201ENST00000263398 FAM136AQ96C01 138 aa11.02□□□□□ -0.65
CD44-201ENST00000263398 CEP41Q9BYV8 373 aa11.02□□□□□ -0.65
CD44-201ENST00000263398 PORCNQ9H237 461 aa11.02□□□□□ -0.65
CD44-201ENST00000263398 TMEM134Q9H6X4 195 aa11.02□□□□□ -0.65
CD44-201ENST00000263398 C10orf88Q9H8K7 445 aa11.02□□□□□ -0.65
CD44-201ENST00000263398 PAPOLBQ9NRJ5 636 aaKnown RBP11.02□□□□□ -0.65
CD44-201ENST00000263398 MPP6Q9NZW5 540 aa11.02□□□□□ -0.65
CD44-201ENST00000263398 ARMCX1Q9P291 453 aa11.02□□□□□ -0.65
CD44-201ENST00000263398 PCDHB7Q9Y5E2 793 aa11.02□□□□□ -0.65
CD44-201ENST00000263398 LACTBL1A8MY62 500 aa11.02□□□□□ -0.65
CD44-201ENST00000263398 H7C4K7 107 aa11.02□□□□□ -0.65
CD44-201ENST00000263398 MAMLD1Q13495 774 aa11.02□□□□□ -0.65
CD44-201ENST00000263398 TRIM16LQ309B1 348 aa11.02□□□□□ -0.65
CD44-201ENST00000263398 IRF2BP2Q7Z5L9 587 aa11.02□□□□□ -0.65
CD44-201ENST00000263398 VSIG10LQ86VR7 867 aa11.02□□□□□ -0.65
CD44-201ENST00000263398 ZFPM1Q8IX07 1006 aa11.02□□□□□ -0.65
CD44-201ENST00000263398 DEFB106AQ8N104 65 aa11.02□□□□□ -0.65
CD44-201ENST00000263398 POU5F2Q8N7G0 328 aa11.02□□□□□ -0.65
CD44-201ENST00000263398 DIS3LQ8TF46 1054 aaKnown RBP11.02□□□□□ -0.65
CD44-201ENST00000263398 CELF6Q96J87 481 aaKnown RBP11.02□□□□□ -0.65
CD44-201ENST00000263398 ZCWPW1Q9H0M4 648 aa11.02□□□□□ -0.65
CD44-201ENST00000263398 ACP6Q9NPH0 428 aa11.02□□□□□ -0.65
CD44-201ENST00000263398 NMRK2Q9NPI5 230 aa11.02□□□□□ -0.65
CD44-201ENST00000263398 POLG2Q9UHN1 485 aa11.02□□□□□ -0.65
CD44-201ENST00000263398 PEAK1Q9H792 1746 aa11.02□□□□□ -0.65
CD44-201ENST00000263398 MROH7Q68CQ1 1323 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 E5RJQ4 531 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 MT-CO1P00395 513 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 ABHD2P08910 425 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 TPH1P17752 444 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 ME2P23368 584 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 FASP25445 335 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 MZF1P28698 734 aaPredicted RBP11.01□□□□□ -0.65
CD44-201ENST00000263398 ZNF135P52742 658 aaPredicted RBP11.01□□□□□ -0.65
CD44-201ENST00000263398 ELF3P78545 371 aaPredicted RBP11.01□□□□□ -0.65
CD44-201ENST00000263398 TAF2Q6P1X5 1199 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 ZFP1Q6P2D0 407 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 LRRC74BQ6ZQY2 392 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 OTOAQ7RTW8 1153 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 PRDM16Q9HAZ2 1276 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 A1CFQ9NQ94 594 aaKnown RBP11.01□□□□□ -0.65
CD44-201ENST00000263398 SETD4Q9NVD3 440 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 SELENONQ9NZV5 590 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 CTNNAL1Q9UBT7 734 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 CROTQ9UKG9 612 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 PIK3C2AO00443 1686 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 ERI2A8K979 691 aaKnown RBP11.01□□□□□ -0.65
CD44-201ENST00000263398 WNT10BO00744 389 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 SHBGP04278 402 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 FAM58BPP0C7Q3 252 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms