RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 PPM1LQ5SGD2 360 aa12.34□□□□□ -0.43
USHBP1-201ENST00000252597 JADE1Q6IE81 842 aa12.34□□□□□ -0.43
USHBP1-201ENST00000252597 SPATA31D4Q6ZUB0 917 aa12.34□□□□□ -0.43
USHBP1-201ENST00000252597 ZNF669Q96BR6 464 aaPredicted RBP12.34□□□□□ -0.43
USHBP1-201ENST00000252597 TMEM176AQ96HP8 235 aa12.34□□□□□ -0.43
USHBP1-201ENST00000252597 KLHL4Q9C0H6 718 aa12.34□□□□□ -0.43
USHBP1-201ENST00000252597 ARHGEF4Q9NR80 690 aa12.34□□□□□ -0.43
USHBP1-201ENST00000252597 DTNAQ9Y4J8 743 aa12.34□□□□□ -0.43
USHBP1-201ENST00000252597 LAMA2P24043 3122 aaKnown RBP12.33□□□□□ -0.43
USHBP1-201ENST00000252597 SLC15A5A6NIM6 579 aa12.33□□□□□ -0.44
USHBP1-201ENST00000252597 A8MXQ7 604 aa12.33□□□□□ -0.44
USHBP1-201ENST00000252597 LACTBL1A8MY62 500 aa12.33□□□□□ -0.44
USHBP1-201ENST00000252597 SEC24DO94855 1032 aaPredicted RBP12.33□□□□□ -0.44
USHBP1-201ENST00000252597 LSM8O95777 96 aaKnown RBP12.33□□□□□ -0.44
USHBP1-201ENST00000252597 GSTA2P09210 222 aa12.33□□□□□ -0.44
USHBP1-201ENST00000252597 RALBP11234 206 aa12.33□□□□□ -0.44
USHBP1-201ENST00000252597 PMLP29590 882 aa12.33□□□□□ -0.44
USHBP1-201ENST00000252597 ASPAP45381 313 aa12.33□□□□□ -0.44
USHBP1-201ENST00000252597 ACTR3P61158 418 aa12.33□□□□□ -0.44
USHBP1-201ENST00000252597 HSDL1Q3SXM5 330 aa12.33□□□□□ -0.44
USHBP1-201ENST00000252597 HSF5Q4G112 596 aaPredicted RBP12.33□□□□□ -0.44
USHBP1-201ENST00000252597 CAND1Q86VP6 1230 aaKnown RBP12.33□□□□□ -0.44
USHBP1-201ENST00000252597 PCDH19Q8TAB3 1148 aa12.33□□□□□ -0.44
USHBP1-201ENST00000252597 USP33Q8TEY7 942 aa12.33□□□□□ -0.44
USHBP1-201ENST00000252597 MZB1Q8WU39 189 aa12.33□□□□□ -0.44
USHBP1-201ENST00000252597 EZH1Q92800 747 aaPredicted RBP12.33□□□□□ -0.44
USHBP1-201ENST00000252597 CDHR1Q96JP9 859 aa12.33□□□□□ -0.44
USHBP1-201ENST00000252597 ANKRD27Q96NW4 1050 aa12.33□□□□□ -0.44
USHBP1-201ENST00000252597 TEX13BQ9BXU2 312 aa12.33□□□□□ -0.44
USHBP1-201ENST00000252597 NUF2Q9BZD4 464 aa12.33□□□□□ -0.44
USHBP1-201ENST00000252597 TMEM216Q9P0N5 145 aa12.33□□□□□ -0.44
USHBP1-201ENST00000252597 HES2Q9Y543 173 aa12.33□□□□□ -0.44
USHBP1-201ENST00000252597 C3orf70A6NLC5 250 aaPredicted RBP12.33□□□□□ -0.44
USHBP1-201ENST00000252597 SCNN1BP51168 640 aa12.33□□□□□ -0.44
USHBP1-201ENST00000252597 PDK3Q15120 406 aa12.33□□□□□ -0.44
USHBP1-201ENST00000252597 NOMO1Q15155 1222 aa12.33□□□□□ -0.44
USHBP1-201ENST00000252597 TMEM198Q66K66 360 aa12.33□□□□□ -0.44
USHBP1-201ENST00000252597 DRICH1Q6PGQ1 229 aaPredicted RBP12.33□□□□□ -0.44
USHBP1-201ENST00000252597 FRMD7Q6ZUT3 714 aa12.33□□□□□ -0.44
USHBP1-201ENST00000252597 ARHGAP22Q7Z5H3 698 aa12.33□□□□□ -0.44
USHBP1-201ENST00000252597 ADGRF2Q8IZF7 708 aa12.33□□□□□ -0.44
USHBP1-201ENST00000252597 PPP2R3CQ969Q6 453 aa12.33□□□□□ -0.44
USHBP1-201ENST00000252597 CATSPER2Q96P56 530 aa12.33□□□□□ -0.44
USHBP1-201ENST00000252597 CDRT15Q96T59 188 aa12.33□□□□□ -0.44
USHBP1-201ENST00000252597 S100A14Q9HCY8 104 aa12.33□□□□□ -0.44
USHBP1-201ENST00000252597 THAP1Q9NVV9 213 aa12.33□□□□□ -0.44
USHBP1-201ENST00000252597 KLHL8Q9P2G9 620 aaPredicted RBP12.33□□□□□ -0.44
USHBP1-201ENST00000252597 TPST1O60507 370 aa12.32□□□□□ -0.44
USHBP1-201ENST00000252597 RTN3O95197 1032 aaPredicted RBP12.32□□□□□ -0.44
USHBP1-201ENST00000252597 VCLP18206 1134 aa12.32□□□□□ -0.44
USHBP1-201ENST00000252597 UBA1P22314 1058 aaKnown RBP12.32□□□□□ -0.44
USHBP1-201ENST00000252597 ART3Q13508 389 aa12.32□□□□□ -0.44
USHBP1-201ENST00000252597 GK3PQ14409 553 aa12.32□□□□□ -0.44
USHBP1-201ENST00000252597 DALRD3Q5D0E6 543 aaKnown RBP12.32□□□□□ -0.44
USHBP1-201ENST00000252597 EFCAB12Q6NXP0 572 aa12.32□□□□□ -0.44
USHBP1-201ENST00000252597 GADL1Q6ZQY3 521 aa12.32□□□□□ -0.44
USHBP1-201ENST00000252597 NET1Q7Z628 596 aaPredicted RBP12.32□□□□□ -0.44
USHBP1-201ENST00000252597 SNX32Q86XE0 403 aa12.32□□□□□ -0.44
USHBP1-201ENST00000252597 CNPY3Q9BT09 278 aa12.32□□□□□ -0.44
USHBP1-201ENST00000252597 POPDC2Q9HBU9 364 aa12.32□□□□□ -0.44
USHBP1-201ENST00000252597 C10orf71Q711Q0 1435 aa12.32□□□□□ -0.44
USHBP1-201ENST00000252597 NDC80O14777 642 aa12.32□□□□□ -0.44
USHBP1-201ENST00000252597 PAPSS1O43252 624 aaPredicted RBP12.32□□□□□ -0.44
USHBP1-201ENST00000252597 KRT72Q14CN4 511 aa12.32□□□□□ -0.44
USHBP1-201ENST00000252597 PDK1Q15118 436 aa12.32□□□□□ -0.44
USHBP1-201ENST00000252597 HSP90AA5PQ58FG0 334 aa12.32□□□□□ -0.44
USHBP1-201ENST00000252597 MAP1SQ66K74 1059 aaPredicted RBP12.32□□□□□ -0.44
USHBP1-201ENST00000252597 RBM44Q6ZP01 1051 aaKnown RBP12.32□□□□□ -0.44
USHBP1-201ENST00000252597 MARK2Q7KZI7 788 aaKnown RBP12.32□□□□□ -0.44
USHBP1-201ENST00000252597 C1orf127Q8N9H9 656 aa12.32□□□□□ -0.44
USHBP1-201ENST00000252597 NLRP7Q8WX94 980 aa12.32□□□□□ -0.44
USHBP1-201ENST00000252597 KIF12Q96FN5 646 aa12.32□□□□□ -0.44
USHBP1-201ENST00000252597 FAM49AQ9H0Q0 323 aaPredicted RBP12.32□□□□□ -0.44
USHBP1-201ENST00000252597 MINDY3Q9H8M7 445 aa12.32□□□□□ -0.44
USHBP1-201ENST00000252597 PPCSQ9HAB8 311 aa12.32□□□□□ -0.44
USHBP1-201ENST00000252597 XPNPEP3Q9NQH7 507 aa12.32□□□□□ -0.44
USHBP1-201ENST00000252597 COL4A5P29400 1685 aa12.32□□□□□ -0.44
USHBP1-201ENST00000252597 PHGDHO43175 533 aaKnown RBP12.32□□□□□ -0.44
USHBP1-201ENST00000252597 STAG3L1P0CL83 205 aa12.32□□□□□ -0.44
USHBP1-201ENST00000252597 FOLH1Q04609 750 aa12.32□□□□□ -0.44
USHBP1-201ENST00000252597 MTHFD1LQ6UB35 978 aa12.32□□□□□ -0.44
USHBP1-201ENST00000252597 EGFL6Q8IUX8 553 aa12.32□□□□□ -0.44
USHBP1-201ENST00000252597 SLC4A11Q8NBS3 891 aa12.32□□□□□ -0.44
USHBP1-201ENST00000252597 SLC39A10Q9ULF5 831 aa12.32□□□□□ -0.44
USHBP1-201ENST00000252597 A0A088AWK7 358 aa12.31□□□□□ -0.44
USHBP1-201ENST00000252597 GOT1P17174 413 aa12.31□□□□□ -0.44
USHBP1-201ENST00000252597 NME5P56597 212 aa12.31□□□□□ -0.44
USHBP1-201ENST00000252597 FLOT2Q14254 428 aa12.31□□□□□ -0.44
USHBP1-201ENST00000252597 C6orf52Q5T4I8 152 aa12.31□□□□□ -0.44
USHBP1-201ENST00000252597 PMF1Q6P1K2 205 aa12.31□□□□□ -0.44
USHBP1-201ENST00000252597 TP53INP2Q8IXH6 220 aa12.31□□□□□ -0.44
USHBP1-201ENST00000252597 ZNF781Q8N8C0 355 aa12.31□□□□□ -0.44
USHBP1-201ENST00000252597 PNPLA1Q8N8W4 532 aa12.31□□□□□ -0.44
USHBP1-201ENST00000252597 COLGALT1Q8NBJ5 622 aa12.31□□□□□ -0.44
USHBP1-201ENST00000252597 ZNF280CQ8ND82 737 aa12.31□□□□□ -0.44
USHBP1-201ENST00000252597 MCUQ8NE86 351 aa12.31□□□□□ -0.44
USHBP1-201ENST00000252597 GATA6Q92908 595 aa12.31□□□□□ -0.44
USHBP1-201ENST00000252597 TLE6Q9H808 572 aa12.31□□□□□ -0.44
USHBP1-201ENST00000252597 LIN28AQ9H9Z2 209 aaKnown RBP12.31□□□□□ -0.44
USHBP1-201ENST00000252597 IL1RL2Q9HB29 575 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms