RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 GRHL1Q9NZI5 618 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 CYTH4Q9UIA0 394 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 TSPAN16Q9UKR8 245 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 SORCS3Q9UPU3 1222 aa9□□□□□ -0.97
VPS4B-201ENST00000238497 WDR27A2RRH5 827 aa8.99□□□□□ -0.97
VPS4B-201ENST00000238497 CYB561D2O14569 222 aa8.99□□□□□ -0.97
VPS4B-201ENST00000238497 MED7O43513 233 aa8.99□□□□□ -0.97
VPS4B-201ENST00000238497 TJP3O95049 919 aa8.99□□□□□ -0.97
VPS4B-201ENST00000238497 MYBL1P10243 752 aa8.99□□□□□ -0.97
VPS4B-201ENST00000238497 ODC1P11926 461 aa8.99□□□□□ -0.97
VPS4B-201ENST00000238497 CHN1P15882 459 aa8.99□□□□□ -0.97
VPS4B-201ENST00000238497 SLC1A1P43005 524 aa8.99□□□□□ -0.97
VPS4B-201ENST00000238497 ASPAP45381 313 aa8.99□□□□□ -0.97
VPS4B-201ENST00000238497 TAF6P49848 677 aa8.99□□□□□ -0.97
VPS4B-201ENST00000238497 LILRA4P59901 499 aa8.99□□□□□ -0.97
VPS4B-201ENST00000238497 YWHAEP62258 255 aaKnown RBP8.99□□□□□ -0.97
VPS4B-201ENST00000238497 MYO1EQ12965 1108 aa8.99□□□□□ -0.97
VPS4B-201ENST00000238497 DUSP4Q13115 394 aa8.99□□□□□ -0.97
VPS4B-201ENST00000238497 GOLGA7BQ2TAP0 167 aa8.99□□□□□ -0.97
VPS4B-201ENST00000238497 C9orf57Q5W0N0 161 aa8.99□□□□□ -0.97
VPS4B-201ENST00000238497 DARS2Q6PI48 645 aaKnown RBP8.99□□□□□ -0.97
VPS4B-201ENST00000238497 LILRA6Q6PI73 481 aa8.99□□□□□ -0.97
VPS4B-201ENST00000238497 CD300LGQ6UXG3 332 aa8.99□□□□□ -0.97
VPS4B-201ENST00000238497 TRIM72Q6ZMU5 477 aa8.99□□□□□ -0.97
VPS4B-201ENST00000238497 CD302Q8IX05 232 aa8.99□□□□□ -0.97
VPS4B-201ENST00000238497 ATAD1Q8NBU5 361 aa8.99□□□□□ -0.97
VPS4B-201ENST00000238497 ZNF461Q8TAF7 563 aa8.99□□□□□ -0.97
VPS4B-201ENST00000238497 ACTL9Q8TC94 416 aa8.99□□□□□ -0.97
VPS4B-201ENST00000238497 ZNF707Q96C28 371 aaPredicted RBP8.99□□□□□ -0.97
VPS4B-201ENST00000238497 SNF8Q96H20 258 aa8.99□□□□□ -0.97
VPS4B-201ENST00000238497 CABS1Q96KC9 395 aa8.99□□□□□ -0.97
VPS4B-201ENST00000238497 CCT8L2Q96SF2 557 aa8.99□□□□□ -0.97
VPS4B-201ENST00000238497 SEPT5Q99719 369 aaPredicted RBP8.99□□□□□ -0.97
VPS4B-201ENST00000238497 MED10Q9BTT4 135 aa8.99□□□□□ -0.97
VPS4B-201ENST00000238497 MAGEB5Q9BZ81 275 aa8.99□□□□□ -0.97
VPS4B-201ENST00000238497 ASB7Q9H672 318 aa8.99□□□□□ -0.97
VPS4B-201ENST00000238497 KCNK12Q9HB15 430 aa8.99□□□□□ -0.97
VPS4B-201ENST00000238497 C11orf16Q9NQ32 467 aa8.99□□□□□ -0.97
VPS4B-201ENST00000238497 FEZ2Q9UHY8 353 aaPredicted RBP8.99□□□□□ -0.97
VPS4B-201ENST00000238497 STYXL1Q9Y6J8 313 aa8.99□□□□□ -0.97
VPS4B-201ENST00000238497 GPR37L1O60883 481 aa8.99□□□□□ -0.97
VPS4B-201ENST00000238497 PDGFBP01127 241 aaPredicted RBP8.99□□□□□ -0.97
VPS4B-201ENST00000238497 ERBB2P04626 1255 aa8.99□□□□□ -0.97
VPS4B-201ENST00000238497 CCDC130P13994 396 aa8.99□□□□□ -0.97
VPS4B-201ENST00000238497 RAD23BP54727 409 aa8.99□□□□□ -0.97
VPS4B-201ENST00000238497 RBP5P82980 135 aa8.99□□□□□ -0.97
VPS4B-201ENST00000238497 OTUD4Q01804 1114 aaKnown RBP8.99□□□□□ -0.97
VPS4B-201ENST00000238497 POU5F1Q01860 360 aaKnown RBP8.99□□□□□ -0.97
VPS4B-201ENST00000238497 MGAT5BQ3V5L5 792 aa8.99□□□□□ -0.97
VPS4B-201ENST00000238497 CCDC13Q8IYE1 715 aa8.99□□□□□ -0.97
VPS4B-201ENST00000238497 GRK7Q8WTQ7 553 aa8.99□□□□□ -0.97
VPS4B-201ENST00000238497 ARHGEF2Q92974 986 aaKnown RBP8.99□□□□□ -0.97
VPS4B-201ENST00000238497 CD101Q93033 1021 aa8.99□□□□□ -0.97
VPS4B-201ENST00000238497 ZNF512Q96ME7 567 aaPredicted RBP8.99□□□□□ -0.97
VPS4B-201ENST00000238497 PRMT1Q99873 361 aaKnown RBP8.99□□□□□ -0.97
VPS4B-201ENST00000238497 MRPL45Q9BRJ2 306 aaKnown RBP8.99□□□□□ -0.97
VPS4B-201ENST00000238497 STAU2Q9NUL3 570 aaKnown RBP eCLIP8.99□□□□□ -0.97
VPS4B-201ENST00000238497 PIH1D1Q9NWS0 290 aaKnown RBP8.99□□□□□ -0.97
VPS4B-201ENST00000238497 PCDHB8Q9UN66 801 aa8.99□□□□□ -0.97
VPS4B-201ENST00000238497 ATG2AQ2TAZ0 1938 aa8.99□□□□□ -0.97
VPS4B-201ENST00000238497 TMEM191CA6NGB0 347 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 PRR33A8MZF0 331 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 SOAT2O75908 522 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 GJA1P17302 382 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 ATXN1P54253 815 aaKnown RBP8.98□□□□□ -0.97
VPS4B-201ENST00000238497 TWF1Q12792 350 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 PDIA2Q13087 525 aaKnown RBP8.98□□□□□ -0.97
VPS4B-201ENST00000238497 FASTKD3Q14CZ7 662 aaKnown RBP8.98□□□□□ -0.97
VPS4B-201ENST00000238497 SEPT7Q16181 437 aaKnown RBP8.98□□□□□ -0.97
VPS4B-201ENST00000238497 WSCD1Q658N2 575 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 THEM5Q8N1Q8 247 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 ITFG1Q8TB96 612 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 RXFP2Q8WXD0 754 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 ELAC2Q9BQ52 826 aaKnown RBP8.98□□□□□ -0.97
VPS4B-201ENST00000238497 NT5C1AQ9BXI3 368 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 XYLT2Q9H1B5 865 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 BACE2Q9Y5Z0 518 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 FAM169AQ9Y6X4 670 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 PRPSAP2O60256 369 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 HUS1O60921 280 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 IL18RAPO95256 599 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 IL1R2P27930 398 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 ALDH1A3P47895 512 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 GAD2Q05329 585 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 C1QBPQ07021 282 aaKnown RBP8.98□□□□□ -0.97
VPS4B-201ENST00000238497 SIGLEC14Q08ET2 396 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 PPP1R26Q5T8A7 1209 aaPredicted RBP8.98□□□□□ -0.97
VPS4B-201ENST00000238497 SPOCD1Q6ZMY3 1216 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 RNF19BQ6ZMZ0 732 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 FAM47EQ6ZV65 393 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 PDZD4Q76G19 769 aaPredicted RBP8.98□□□□□ -0.97
VPS4B-201ENST00000238497 NLRP14Q86W24 1093 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 CTAGE3PQ8IX95 158 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 CEP41Q9BYV8 373 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 DPEP3Q9H4B8 488 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 ZDHHC18Q9NUE0 388 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 ABI2Q9NYB9 513 aaPredicted RBP8.98□□□□□ -0.97
VPS4B-201ENST00000238497 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.98□□□□□ -0.97
VPS4B-201ENST00000238497 SEPT10Q9P0V9 454 aa8.98□□□□□ -0.97
VPS4B-201ENST00000238497 CA14Q9ULX7 337 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms