RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 SCD5Q86SK9 330 aa15.76■□□□□ 0.11
SYNE2-228ENST00000639659 DENND1CQ8IV53 801 aa15.76■□□□□ 0.11
SYNE2-228ENST00000639659 CEP57L1Q8IYX8 460 aa15.76■□□□□ 0.11
SYNE2-228ENST00000639659 DDI1Q8WTU0 396 aa15.76■□□□□ 0.11
SYNE2-228ENST00000639659 DNASE2BQ8WZ79 361 aa15.76■□□□□ 0.11
SYNE2-228ENST00000639659 HNRNPABQ99729 332 aaKnown RBP15.76■□□□□ 0.11
SYNE2-228ENST00000639659 NT5C1AQ9BXI3 368 aa15.76■□□□□ 0.11
SYNE2-228ENST00000639659 ITM2CQ9NQX7 267 aa15.76■□□□□ 0.11
SYNE2-228ENST00000639659 FAM13BQ9NYF5 915 aa15.76■□□□□ 0.11
SYNE2-228ENST00000639659 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.76■□□□□ 0.11
SYNE2-228ENST00000639659 SLC12A8A0AV02 714 aa15.75■□□□□ 0.11
SYNE2-228ENST00000639659 FAM149AA5PLN7 773 aa15.75■□□□□ 0.11
SYNE2-228ENST00000639659 METTL12A8MUP2 240 aa15.75■□□□□ 0.11
SYNE2-228ENST00000639659 ASS1P00966 412 aaKnown RBP15.75■□□□□ 0.11
SYNE2-228ENST00000639659 PENKP01210 267 aaPredicted RBP15.75■□□□□ 0.11
SYNE2-228ENST00000639659 NR3C1P04150 777 aa15.75■□□□□ 0.11
SYNE2-228ENST00000639659 RPN1P04843 607 aaKnown RBP15.75■□□□□ 0.11
SYNE2-228ENST00000639659 CHKAP35790 457 aa15.75■□□□□ 0.11
SYNE2-228ENST00000639659 ME1P48163 572 aa15.75■□□□□ 0.11
SYNE2-228ENST00000639659 BNC1Q01954 994 aa15.75■□□□□ 0.11
SYNE2-228ENST00000639659 ZACNQ401N2 412 aa15.75■□□□□ 0.11
SYNE2-228ENST00000639659 KLHDC10Q6PID8 442 aa15.75■□□□□ 0.11
SYNE2-228ENST00000639659 IL27RAQ6UWB1 636 aa15.75■□□□□ 0.11
SYNE2-228ENST00000639659 LAYNQ6UX15 382 aa15.75■□□□□ 0.11
SYNE2-228ENST00000639659 ZNF366Q8N895 744 aa15.75■□□□□ 0.11
SYNE2-228ENST00000639659 CADM4Q8NFZ8 388 aa15.75■□□□□ 0.11
SYNE2-228ENST00000639659 TAF4BQ92750 862 aa15.75■□□□□ 0.11
SYNE2-228ENST00000639659 NUP58Q9BVL2 599 aa15.75■□□□□ 0.11
SYNE2-228ENST00000639659 ELOVL2Q9NXB9 296 aa15.75■□□□□ 0.11
SYNE2-228ENST00000639659 CLEC4EQ9ULY5 219 aa15.75■□□□□ 0.11
SYNE2-228ENST00000639659 BTBD3Q9Y2F9 522 aa15.75■□□□□ 0.11
SYNE2-228ENST00000639659 ZNF510Q9Y2H8 683 aa15.75■□□□□ 0.11
SYNE2-228ENST00000639659 SLC27A6Q9Y2P4 619 aa15.75■□□□□ 0.11
SYNE2-228ENST00000639659 PVALEFA0A1B0GWK0 134 aa15.74■□□□□ 0.11
SYNE2-228ENST00000639659 FLRT2O43155 660 aa15.74■□□□□ 0.11
SYNE2-228ENST00000639659 TSPAN3O60637 253 aa15.74■□□□□ 0.11
SYNE2-228ENST00000639659 YEATS4O95619 227 aa15.74■□□□□ 0.11
SYNE2-228ENST00000639659 TRIM49P0CI25 452 aa15.74■□□□□ 0.11
SYNE2-228ENST00000639659 TRIM49CP0CI26 452 aa15.74■□□□□ 0.11
SYNE2-228ENST00000639659 PSEN1P49768 467 aa15.74■□□□□ 0.11
SYNE2-228ENST00000639659 KIF11P52732 1056 aa15.74■□□□□ 0.11
SYNE2-228ENST00000639659 COPAP53621 1224 aa15.74■□□□□ 0.11
SYNE2-228ENST00000639659 CLDN10P78369 228 aa15.74■□□□□ 0.11
SYNE2-228ENST00000639659 COG7P83436 770 aa15.74■□□□□ 0.11
SYNE2-228ENST00000639659 IL9RQ01113 521 aa15.74■□□□□ 0.11
SYNE2-228ENST00000639659 STK4Q13043 487 aa15.74■□□□□ 0.11
SYNE2-228ENST00000639659 FNDC3BQ53EP0 1204 aaKnown RBP15.74■□□□□ 0.11
SYNE2-228ENST00000639659 GLRX5Q86SX6 157 aa15.74■□□□□ 0.11
SYNE2-228ENST00000639659 METTL3Q86U44 580 aaKnown RBP15.74■□□□□ 0.11
SYNE2-228ENST00000639659 KIAA0895Q8NCT3 520 aa15.74■□□□□ 0.11
SYNE2-228ENST00000639659 DCLK3Q9C098 648 aa15.74■□□□□ 0.11
SYNE2-228ENST00000639659 LHX5Q9H2C1 402 aa15.74■□□□□ 0.11
SYNE2-228ENST00000639659 MARCH2Q9P0N8 246 aa15.74■□□□□ 0.11
SYNE2-228ENST00000639659 FBXO10Q9UK96 956 aa15.74■□□□□ 0.11
SYNE2-228ENST00000639659 AGO1Q9UL18 857 aaKnown RBP15.74■□□□□ 0.11
SYNE2-228ENST00000639659 STRIP2Q9ULQ0 834 aa15.74■□□□□ 0.11
SYNE2-228ENST00000639659 FRMD4BQ9Y2L6 1034 aa15.74■□□□□ 0.11
SYNE2-228ENST00000639659 SLCO1B1Q9Y6L6 691 aa15.74■□□□□ 0.11
SYNE2-228ENST00000639659 TMEM131Q92545 1883 aa15.74■□□□□ 0.11
SYNE2-228ENST00000639659 LOC400499M0QZD8 3231 aa15.73■□□□□ 0.11
SYNE2-228ENST00000639659 KCNK3O14649 394 aa15.73■□□□□ 0.11
SYNE2-228ENST00000639659 NPC1O15118 1278 aa15.73■□□□□ 0.11
SYNE2-228ENST00000639659 GCLMP48507 274 aa15.73■□□□□ 0.11
SYNE2-228ENST00000639659 CYP4F3Q08477 520 aa15.73■□□□□ 0.11
SYNE2-228ENST00000639659 TEAD4Q15561 434 aa15.73■□□□□ 0.11
SYNE2-228ENST00000639659 KIF19Q2TAC6 998 aa15.73■□□□□ 0.11
SYNE2-228ENST00000639659 PPP1R26Q5T8A7 1209 aaPredicted RBP15.73■□□□□ 0.11
SYNE2-228ENST00000639659 CCDC186Q7Z3E2 898 aa15.73■□□□□ 0.11
SYNE2-228ENST00000639659 ADAT2Q7Z6V5 191 aaKnown RBP15.73■□□□□ 0.11
SYNE2-228ENST00000639659 CYB5D2Q8WUJ1 264 aa15.73■□□□□ 0.11
SYNE2-228ENST00000639659 DCBLD2Q96PD2 775 aa15.73■□□□□ 0.11
SYNE2-228ENST00000639659 CDK5RAP1Q96SZ6 601 aaKnown RBP15.73■□□□□ 0.11
SYNE2-228ENST00000639659 CDC6Q99741 560 aa15.73■□□□□ 0.11
SYNE2-228ENST00000639659 ARID3AQ99856 593 aa15.73■□□□□ 0.11
SYNE2-228ENST00000639659 DNAI2Q9GZS0 605 aa15.73■□□□□ 0.11
SYNE2-228ENST00000639659 C6orf106Q9H6K1 298 aaPredicted RBP15.73■□□□□ 0.11
SYNE2-228ENST00000639659 APOBEC3GQ9HC16 384 aaKnown RBP15.73■□□□□ 0.11
SYNE2-228ENST00000639659 PNPLA8Q9NP80 782 aa15.73■□□□□ 0.11
SYNE2-228ENST00000639659 SERTAD1Q9UHV2 236 aa15.73■□□□□ 0.11
SYNE2-228ENST00000639659 NFE2L3Q9Y4A8 694 aa15.73■□□□□ 0.11
SYNE2-228ENST00000639659 SNX11Q9Y5W9 270 aa15.73■□□□□ 0.11
SYNE2-228ENST00000639659 ACACAQ13085 2346 aa15.73■□□□□ 0.11
SYNE2-228ENST00000639659 CKAP5Q14008 2032 aa15.72■□□□□ 0.11
SYNE2-228ENST00000639659 FSBPO95073 299 aa15.72■□□□□ 0.11
SYNE2-228ENST00000639659 ZNF883P0CG24 379 aa15.72■□□□□ 0.11
SYNE2-228ENST00000639659 ACSL1P33121 698 aa15.72■□□□□ 0.11
SYNE2-228ENST00000639659 VAMP7P51809 220 aa15.72■□□□□ 0.11
SYNE2-228ENST00000639659 AFF3P51826 1226 aaKnown RBP15.72■□□□□ 0.11
SYNE2-228ENST00000639659 ZNF132P52740 706 aa15.72■□□□□ 0.11
SYNE2-228ENST00000639659 INCA1Q0VD86 236 aa15.72■□□□□ 0.11
SYNE2-228ENST00000639659 NUMA1Q14980 2115 aa15.72■□□□□ 0.11
SYNE2-228ENST00000639659 SUZ12Q15022 739 aaKnown RBP15.72■□□□□ 0.11
SYNE2-228ENST00000639659 EIF4HQ15056 248 aaKnown RBP15.72■□□□□ 0.11
SYNE2-228ENST00000639659 KMT5BQ4FZB7 885 aa15.72■□□□□ 0.11
SYNE2-228ENST00000639659 TMPRSS7Q7RTY8 843 aa15.72■□□□□ 0.11
SYNE2-228ENST00000639659 CCDC150Q8NCX0 1101 aa15.72■□□□□ 0.11
SYNE2-228ENST00000639659 OR2T3Q8NH03 318 aa15.72■□□□□ 0.11
SYNE2-228ENST00000639659 TMC2Q8TDI7 906 aa15.72■□□□□ 0.11
SYNE2-228ENST00000639659 TAS1R2Q8TE23 839 aa15.72■□□□□ 0.11
SYNE2-228ENST00000639659 INTS4Q96HW7 963 aaKnown RBP15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms