RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 RPA3P35244 121 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-217ENST00000637988 RIN3Q8TB24 985 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 CYGBQ8WWM9 190 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 NRCAMQ92823 1304 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 TGS1Q96RS0 853 aaKnown RBP6.29□□□□□ -1.4
SCN1A-217ENST00000637988 APBA2Q99767 749 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 NT5MQ9NPB1 228 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 ANKDD1BA6NHY2 528 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 MGRN1O60291 552 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 HLA-DRAP01903 254 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 GTF2H1P32780 548 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 FMO5P49326 533 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 OAZ1P54368 228 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 ZNF445P59923 1031 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 CYLC2Q14093 348 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-217ENST00000637988 UBXN2BQ14CS0 331 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 RAB30Q15771 203 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 SMU1Q2TAY7 513 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 RAET1GQ6H3X3 334 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 RPTNQ6XPR3 784 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 SYTL5Q8TDW5 730 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-217ENST00000637988 GRAMD1AQ96CP6 724 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 RERGLQ9H628 205 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 SETD4Q9NVD3 440 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 OR10H1Q9Y4A9 318 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 TBC1D3DA0A087WVF3 549 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 TBC1D3IA0A087WXS9 549 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 TBC1D3EA0A087X179 549 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 TBC1D3KA0A087X1G2 549 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 GSAPA4D1B5 854 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 TBC1D3FA6NER0 549 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-217ENST00000637988 TBC1D3LB9A6J9 549 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 TRIM13O60858 407 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 WBP4O75554 376 aaKnown RBP6.29□□□□□ -1.4
SCN1A-217ENST00000637988 TBC1D3HP0C7X1 549 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 TRIM49P0CI25 452 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 TRIM49CP0CI26 452 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 RBP3P10745 1247 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 PDHBP11177 359 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 NOS2P35228 1153 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 HIC1Q14526 733 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 KBTBD12Q3ZCT8 623 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 TBC1D3GQ6DHY5 549 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 TBC1D3CQ6IPX1 549 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 TBC1D3Q8IZP1 549 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-217ENST00000637988 TMEM86AQ8N2M4 240 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 BRINP2Q9C0B6 783 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 PNPLA6Q8IY17 1366 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 LRRIQ1Q96JM4 1722 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 SOWAHDA6NJG2 315 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 TDP2O95551 362 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 TALDO1P37837 337 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 MASP1P48740 699 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 DEFA1P59665 94 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 DEFA3P59666 94 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 ETF1P62495 437 aaKnown RBP6.29□□□□□ -1.4
SCN1A-217ENST00000637988 SLC7A5Q01650 507 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 GRM3Q14832 879 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 ARMC12Q5T9G4 340 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 LAYNQ6UX15 382 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 TPGS1Q6ZTW0 290 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 FAM220AQ7Z4H9 259 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 GLT6D1Q7Z4J2 308 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 R3HCC1LQ7Z5L2 792 aaKnown RBP6.29□□□□□ -1.4
SCN1A-217ENST00000637988 STK40Q8N2I9 435 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 RP9Q8TA86 221 aaKnown RBP6.29□□□□□ -1.4
SCN1A-217ENST00000637988 LENG9Q96B70 501 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 SLC4A9Q96Q91 983 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 KCTD10Q9H3F6 313 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 PXMP2Q9NR77 195 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 SH3BP4Q9P0V3 963 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 MAPRE3Q9UPY8 281 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 COLEC10Q9Y6Z7 277 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 TARBP1Q13395 1621 aaKnown RBP6.29□□□□□ -1.4
SCN1A-217ENST00000637988 MCIDASD6RGH6 385 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 DEAF1O75398 565 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-217ENST00000637988 VDRP11473 427 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 PAGE2Q7Z2X7 111 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 USP38Q8NB14 1042 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 CPVLQ9H3G5 476 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 NCDNQ9UBB6 729 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 ARL2BPQ9Y2Y0 163 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 RBM7Q9Y580 266 aaKnown RBP6.29□□□□□ -1.4
SCN1A-217ENST00000637988 CEP170BQ9Y4F5 1589 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-217ENST00000637988 PAICSP22234 425 aaKnown RBP6.29□□□□□ -1.4
SCN1A-217ENST00000637988 PRCPP42785 496 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 PMS1P54277 932 aaKnown RBP6.29□□□□□ -1.4
SCN1A-217ENST00000637988 BST2Q10589 180 aaKnown RBP6.29□□□□□ -1.4
SCN1A-217ENST00000637988 NDUFA9Q16795 377 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 PCNX4Q63HM2 1172 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 SLC22A9Q8IVM8 553 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 FAM45AQ8TCE6 357 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 POP1Q99575 1024 aaKnown RBP6.29□□□□□ -1.4
SCN1A-217ENST00000637988 PLA2G12BQ9BX93 195 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 GULP1Q9UBP9 304 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 ZNF229Q9UJW7 825 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 ZNF214Q9UL59 606 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-217ENST00000637988 HBS1LQ9Y450 684 aaKnown RBP6.29□□□□□ -1.4
SCN1A-217ENST00000637988 RHPN2P1A8MT19 583 aa6.29□□□□□ -1.4
SCN1A-217ENST00000637988 IGF2BP3O00425 579 aaKnown RBP eCLIP6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms