RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 SYNCRIPO60506 623 aaKnown RBP17.22■□□□□ 0.35
CLN3-264ENST00000637985 ACADMP11310 421 aa17.22■□□□□ 0.35
CLN3-264ENST00000637985 GNL1P36915 607 aaPredicted RBP17.22■□□□□ 0.35
CLN3-264ENST00000637985 ASIC1P78348 528 aa17.22■□□□□ 0.35
CLN3-264ENST00000637985 DNAJC3Q13217 504 aa17.22■□□□□ 0.35
CLN3-264ENST00000637985 TBC1D25Q3MII6 688 aa17.22■□□□□ 0.35
CLN3-264ENST00000637985 FOXD4L6Q3SYB3 417 aaPredicted RBP17.22■□□□□ 0.35
CLN3-264ENST00000637985 FOXD4L3Q6VB84 417 aaPredicted RBP17.22■□□□□ 0.35
CLN3-264ENST00000637985 FAM124AQ86V42 546 aa17.22■□□□□ 0.35
CLN3-264ENST00000637985 GPD1LQ8N335 351 aa17.22■□□□□ 0.35
CLN3-264ENST00000637985 SCAMP5Q8TAC9 235 aa17.22■□□□□ 0.35
CLN3-264ENST00000637985 P2RY11Q96G91 374 aa17.22■□□□□ 0.35
CLN3-264ENST00000637985 CNDP2Q96KP4 475 aaKnown RBP17.22■□□□□ 0.35
CLN3-264ENST00000637985 CBWD1Q9BRT8 395 aa17.22■□□□□ 0.35
CLN3-264ENST00000637985 KLF16Q9BXK1 252 aaPredicted RBP17.22■□□□□ 0.35
CLN3-264ENST00000637985 PDE11AQ9HCR9 933 aa17.22■□□□□ 0.35
CLN3-264ENST00000637985 PCDHA7Q9UN72 937 aa17.22■□□□□ 0.35
CLN3-264ENST00000637985 SLC27A6Q9Y2P4 619 aa17.22■□□□□ 0.35
CLN3-264ENST00000637985 FAM92AA1XBS5 289 aa17.21■□□□□ 0.35
CLN3-264ENST00000637985 POLR2DO15514 142 aaKnown RBP17.21■□□□□ 0.35
CLN3-264ENST00000637985 LDOC1O95751 146 aaPredicted RBP17.21■□□□□ 0.35
CLN3-264ENST00000637985 TMEM191BP0C7N4 346 aa17.21■□□□□ 0.35
CLN3-264ENST00000637985 PTPN1P18031 435 aaKnown RBP17.21■□□□□ 0.35
CLN3-264ENST00000637985 ACSL1P33121 698 aa17.21■□□□□ 0.35
CLN3-264ENST00000637985 ME1P48163 572 aa17.21■□□□□ 0.35
CLN3-264ENST00000637985 ACADVLP49748 655 aa17.21■□□□□ 0.35
CLN3-264ENST00000637985 LY6DQ14210 128 aa17.21■□□□□ 0.35
CLN3-264ENST00000637985 RESP18Q5W5W9 173 aa17.21■□□□□ 0.35
CLN3-264ENST00000637985 CACTIN-AS1Q8N1I8 211 aa17.21■□□□□ 0.35
CLN3-264ENST00000637985 ZNF507Q8TCN5 953 aa17.21■□□□□ 0.35
CLN3-264ENST00000637985 TSC1Q92574 1164 aa17.21■□□□□ 0.35
CLN3-264ENST00000637985 KCNK16Q96T55 309 aa17.21■□□□□ 0.35
CLN3-264ENST00000637985 MRPL45Q9BRJ2 306 aaKnown RBP17.21■□□□□ 0.35
CLN3-264ENST00000637985 B3GNT5Q9BYG0 378 aa17.21■□□□□ 0.35
CLN3-264ENST00000637985 NACA2Q9H009 215 aa17.21■□□□□ 0.35
CLN3-264ENST00000637985 PCIF1Q9H4Z3 704 aa17.21■□□□□ 0.35
CLN3-264ENST00000637985 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.21■□□□□ 0.356e-9■■■■■ 134.6
CLN3-264ENST00000637985 INTS13Q9NVM9 706 aa17.21■□□□□ 0.35
CLN3-264ENST00000637985 R3HCC1Q9Y3T6 440 aaKnown RBP17.21■□□□□ 0.35
CLN3-264ENST00000637985 GTF3C3Q9Y5Q9 886 aa17.21■□□□□ 0.35
CLN3-264ENST00000637985 GOLGA8IPA6NC78 632 aa17.2■□□□□ 0.34
CLN3-264ENST00000637985 GOLGA8JA6NMD2 632 aa17.2■□□□□ 0.34
CLN3-264ENST00000637985 CLDN5O00501 218 aa17.2■□□□□ 0.34
CLN3-264ENST00000637985 C7P10643 843 aa17.2■□□□□ 0.34
CLN3-264ENST00000637985 CD27P26842 260 aa17.2■□□□□ 0.34
CLN3-264ENST00000637985 PGFP49763 221 aa17.2■□□□□ 0.34
CLN3-264ENST00000637985 PKP1Q13835 747 aa17.2■□□□□ 0.34
CLN3-264ENST00000637985 GEN1Q17RS7 908 aa17.2■□□□□ 0.34
CLN3-264ENST00000637985 FAM26FQ5R3K3 315 aa17.2■□□□□ 0.34
CLN3-264ENST00000637985 UNC13DQ70J99 1090 aa17.2■□□□□ 0.34
CLN3-264ENST00000637985 EPM2AIP1Q7L775 607 aaPredicted RBP17.2■□□□□ 0.34
CLN3-264ENST00000637985 CACUL1Q86Y37 369 aa17.2■□□□□ 0.34
CLN3-264ENST00000637985 GATAD2AQ86YP4 633 aa17.2■□□□□ 0.34
CLN3-264ENST00000637985 OR5B17Q8NGF7 314 aa17.2■□□□□ 0.34
CLN3-264ENST00000637985 TTC9Q92623 222 aa17.2■□□□□ 0.34
CLN3-264ENST00000637985 HPS3Q969F9 1004 aa17.2■□□□□ 0.34
CLN3-264ENST00000637985 BIRC7Q96CA5 298 aa17.2■□□□□ 0.34
CLN3-264ENST00000637985 MMS19Q96T76 1030 aa17.2■□□□□ 0.34
CLN3-264ENST00000637985 ARID3AQ99856 593 aa17.2■□□□□ 0.34
CLN3-264ENST00000637985 ORAI3Q9BRQ5 295 aa17.2■□□□□ 0.34
CLN3-264ENST00000637985 SNX25Q9H3E2 840 aa17.2■□□□□ 0.34
CLN3-264ENST00000637985 DPEP3Q9H4B8 488 aa17.2■□□□□ 0.34
CLN3-264ENST00000637985 KIAA1586Q9HCI6 787 aa17.2■□□□□ 0.34
CLN3-264ENST00000637985 PLK2Q9NYY3 685 aa17.2■□□□□ 0.34
CLN3-264ENST00000637985 RCOR1Q9UKL0 485 aa17.2■□□□□ 0.34
CLN3-264ENST00000637985 UBE4BO95155 1302 aa17.2■□□□□ 0.34
CLN3-264ENST00000637985 PTPRJQ12913 1337 aa17.2■□□□□ 0.34
CLN3-264ENST00000637985 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.19■□□□□ 0.34
CLN3-264ENST00000637985 ZNF233A6NK53 670 aa17.19■□□□□ 0.34
CLN3-264ENST00000637985 SLC28A2O43868 658 aa17.19■□□□□ 0.34
CLN3-264ENST00000637985 TLR5O60602 858 aa17.19■□□□□ 0.34
CLN3-264ENST00000637985 TSPAN3O60637 253 aa17.19■□□□□ 0.34
CLN3-264ENST00000637985 TACC1O75410 805 aa17.19■□□□□ 0.34
CLN3-264ENST00000637985 FAM163BP0C2L3 166 aa17.19■□□□□ 0.34
CLN3-264ENST00000637985 CSRP3P50461 194 aa17.19■□□□□ 0.34
CLN3-264ENST00000637985 MFAP3P55082 362 aa17.19■□□□□ 0.34
CLN3-264ENST00000637985 CDH8P55286 799 aa17.19■□□□□ 0.34
CLN3-264ENST00000637985 TMPRSS3P57727 454 aa17.19■□□□□ 0.34
CLN3-264ENST00000637985 SNRPFP62306 86 aaKnown RBP17.19■□□□□ 0.34
CLN3-264ENST00000637985 DNM1Q05193 864 aaKnown RBP17.19■□□□□ 0.34
CLN3-264ENST00000637985 EHHADHQ08426 723 aa17.19■□□□□ 0.34
CLN3-264ENST00000637985 SURF1Q15526 300 aa17.19■□□□□ 0.34
CLN3-264ENST00000637985 ZNF248Q8NDW4 579 aa17.19■□□□□ 0.34
CLN3-264ENST00000637985 BHMTQ93088 406 aa17.19■□□□□ 0.34
CLN3-264ENST00000637985 ANKRD36BP1Q96IX9 119 aa17.19■□□□□ 0.34
CLN3-264ENST00000637985 LGMNQ99538 433 aa17.19■□□□□ 0.34
CLN3-264ENST00000637985 COMMD8Q9NX08 183 aa17.19■□□□□ 0.34
CLN3-264ENST00000637985 TP53BP1Q12888 1972 aaPredicted RBP17.19■□□□□ 0.34
CLN3-264ENST00000637985 PVALEFA0A1B0GWK0 134 aa17.18■□□□□ 0.34
CLN3-264ENST00000637985 TBX18O95935 607 aa17.18■□□□□ 0.34
CLN3-264ENST00000637985 PRKCHP24723 683 aa17.18■□□□□ 0.34
CLN3-264ENST00000637985 HOXD13P35453 343 aa17.18■□□□□ 0.34
CLN3-264ENST00000637985 SLC5A3P53794 718 aa17.18■□□□□ 0.34
CLN3-264ENST00000637985 UCNP55089 124 aa17.18■□□□□ 0.34
CLN3-264ENST00000637985 ZNF234Q14588 700 aa17.18■□□□□ 0.34
CLN3-264ENST00000637985 ARHGAP40Q5TG30 622 aa17.18■□□□□ 0.34
CLN3-264ENST00000637985 RBBP8NLQ8NC74 664 aaPredicted RBP17.18■□□□□ 0.34
CLN3-264ENST00000637985 OR6B3Q8NGW1 331 aa17.18■□□□□ 0.34
CLN3-264ENST00000637985 SAP25Q8TEE9 199 aa17.18■□□□□ 0.34
CLN3-264ENST00000637985 NOC3LQ8WTT2 800 aaKnown RBP17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms