RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 COG7P83436 770 aa20.37■□□□□ 0.85
CLN3-262ENST00000637699 EFEMP1Q12805 493 aa20.37■□□□□ 0.85
CLN3-262ENST00000637699 KMT5BQ4FZB7 885 aa20.37■□□□□ 0.85
CLN3-262ENST00000637699 RESP18Q5W5W9 173 aa20.37■□□□□ 0.85
CLN3-262ENST00000637699 CCDC186Q7Z3E2 898 aa20.37■□□□□ 0.85
CLN3-262ENST00000637699 PRCCQ92733 491 aaPredicted RBP20.37■□□□□ 0.85
CLN3-262ENST00000637699 IMPG2Q9BZV3 1241 aa20.37■□□□□ 0.85
CLN3-262ENST00000637699 APOBEC3GQ9HC16 384 aaKnown RBP20.37■□□□□ 0.85
CLN3-262ENST00000637699 FRMD4BQ9Y2L6 1034 aa20.37■□□□□ 0.85
CLN3-262ENST00000637699 NFE2L3Q9Y4A8 694 aa20.37■□□□□ 0.85
CLN3-262ENST00000637699 PLXNB3Q9ULL4 1909 aa20.36■□□□□ 0.85
CLN3-262ENST00000637699 METTL12A8MUP2 240 aa20.36■□□□□ 0.85
CLN3-262ENST00000637699 PDXKO00764 312 aa20.36■□□□□ 0.85
CLN3-262ENST00000637699 NPC1O15118 1278 aa20.36■□□□□ 0.85
CLN3-262ENST00000637699 BCAT2O15382 392 aaPredicted RBP20.36■□□□□ 0.85
CLN3-262ENST00000637699 ACADMP11310 421 aa20.36■□□□□ 0.85
CLN3-262ENST00000637699 OXTRP30559 389 aa20.36■□□□□ 0.85
CLN3-262ENST00000637699 MATKP42679 507 aa20.36■□□□□ 0.85
CLN3-262ENST00000637699 ENPP2Q13822 863 aa20.36■□□□□ 0.85
CLN3-262ENST00000637699 ZNF234Q14588 700 aa20.36■□□□□ 0.85
CLN3-262ENST00000637699 PPP1R26Q5T8A7 1209 aaPredicted RBP20.36■□□□□ 0.85
CLN3-262ENST00000637699 DENND1CQ8IV53 801 aa20.36■□□□□ 0.85
CLN3-262ENST00000637699 ZNF276Q8N554 614 aa20.36■□□□□ 0.85
CLN3-262ENST00000637699 TMEM174Q8WUU8 243 aa20.36■□□□□ 0.85
CLN3-262ENST00000637699 SORCS1Q8WY21 1168 aa20.36■□□□□ 0.85
CLN3-262ENST00000637699 PIWIL1Q96J94 861 aaKnown RBP20.36■□□□□ 0.85
CLN3-262ENST00000637699 NUP58Q9BVL2 599 aa20.36■□□□□ 0.85
CLN3-262ENST00000637699 DUSP16Q9BY84 665 aa20.36■□□□□ 0.85
CLN3-262ENST00000637699 DCLK3Q9C098 648 aa20.36■□□□□ 0.85
CLN3-262ENST00000637699 CIPCQ9C0C6 399 aa20.36■□□□□ 0.85
CLN3-262ENST00000637699 CYP3A43Q9HB55 503 aa20.36■□□□□ 0.85
CLN3-262ENST00000637699 TM7SF3Q9NS93 570 aa20.36■□□□□ 0.85
CLN3-262ENST00000637699 ELOVL2Q9NXB9 296 aa20.36■□□□□ 0.85
CLN3-262ENST00000637699 CLIC5Q9NZA1 410 aa20.36■□□□□ 0.85
CLN3-262ENST00000637699 EIF2B4Q9UI10 523 aaKnown RBP20.36■□□□□ 0.85
CLN3-262ENST00000637699 AGO1Q9UL18 857 aaKnown RBP20.36■□□□□ 0.85
CLN3-262ENST00000637699 CLEC4EQ9ULY5 219 aa20.36■□□□□ 0.85
CLN3-262ENST00000637699 USP3Q9Y6I4 520 aa20.36■□□□□ 0.85
CLN3-262ENST00000637699 CILPO75339 1184 aa20.35■□□□□ 0.85
CLN3-262ENST00000637699 CER1O95813 267 aa20.35■□□□□ 0.85
CLN3-262ENST00000637699 PDIA4P13667 645 aaKnown RBP20.35■□□□□ 0.85
CLN3-262ENST00000637699 PRKCHP24723 683 aa20.35■□□□□ 0.85
CLN3-262ENST00000637699 GCLMP48507 274 aa20.35■□□□□ 0.85
CLN3-262ENST00000637699 VAMP7P51809 220 aa20.35■□□□□ 0.85
CLN3-262ENST00000637699 COPAP53621 1224 aa20.35■□□□□ 0.85
CLN3-262ENST00000637699 BNC1Q01954 994 aa20.35■□□□□ 0.85
CLN3-262ENST00000637699 HLA-BQ31612 363 aa20.35■□□□□ 0.85
CLN3-262ENST00000637699 ZNF394Q53GI3 561 aa20.35■□□□□ 0.85
CLN3-262ENST00000637699 ANKS1BQ7Z6G8 1248 aa20.35■□□□□ 0.85
CLN3-262ENST00000637699 GLRX5Q86SX6 157 aa20.35■□□□□ 0.85
CLN3-262ENST00000637699 FAM124AQ86V42 546 aa20.35■□□□□ 0.85
CLN3-262ENST00000637699 MDM1Q8TC05 714 aa20.35■□□□□ 0.85
CLN3-262ENST00000637699 TAS1R2Q8TE23 839 aa20.35■□□□□ 0.85
CLN3-262ENST00000637699 PAGE5Q96GU1 130 aa20.35■□□□□ 0.85
CLN3-262ENST00000637699 CDK5RAP1Q96SZ6 601 aaKnown RBP20.35■□□□□ 0.85
CLN3-262ENST00000637699 FNDC3AQ9Y2H6 1198 aaKnown RBP20.35■□□□□ 0.85
CLN3-262ENST00000637699 CYBBP04839 570 aa20.34■□□□□ 0.85
CLN3-262ENST00000637699 EPHX1P07099 455 aa20.34■□□□□ 0.85
CLN3-262ENST00000637699 SLFN14P0C7P3 912 aa20.34■□□□□ 0.85
CLN3-262ENST00000637699 TRIM49P0CI25 452 aa20.34■□□□□ 0.85
CLN3-262ENST00000637699 TRIM49CP0CI26 452 aa20.34■□□□□ 0.85
CLN3-262ENST00000637699 COL28A1Q2UY09 1125 aa20.34■□□□□ 0.85
CLN3-262ENST00000637699 DDI1Q8WTU0 396 aa20.34■□□□□ 0.85
CLN3-262ENST00000637699 SNX19Q92543 992 aa20.34■□□□□ 0.85
CLN3-262ENST00000637699 NIF3L1Q9GZT8 377 aa20.34■□□□□ 0.85
CLN3-262ENST00000637699 MMRN2Q9H8L6 949 aa20.34■□□□□ 0.85
CLN3-262ENST00000637699 MARCH2Q9P0N8 246 aa20.34■□□□□ 0.85
CLN3-262ENST00000637699 KNL1Q8NG31 2342 aa20.34■□□□□ 0.85
CLN3-262ENST00000637699 LOC400499M0QZD8 3231 aa20.34■□□□□ 0.85
CLN3-262ENST00000637699 CELSR3Q9NYQ7 3312 aa20.33■□□□□ 0.85
CLN3-262ENST00000637699 A0A1B0GVT2 93 aa20.33■□□□□ 0.85
CLN3-262ENST00000637699 SLC12A8A0AV02 714 aa20.33■□□□□ 0.85
CLN3-262ENST00000637699 GOLGA8CPA6NN73 597 aa20.33■□□□□ 0.85
CLN3-262ENST00000637699 ACTN4O43707 911 aaKnown RBP20.33■□□□□ 0.85
CLN3-262ENST00000637699 ZNF883P0CG24 379 aa20.33■□□□□ 0.85
CLN3-262ENST00000637699 ARID5AQ03989 594 aa20.33■□□□□ 0.85
CLN3-262ENST00000637699 PPP3CAQ08209 521 aa20.33■□□□□ 0.85
CLN3-262ENST00000637699 TMEM215Q68D42 235 aa20.33■□□□□ 0.85
CLN3-262ENST00000637699 IL27RAQ6UWB1 636 aa20.33■□□□□ 0.85
CLN3-262ENST00000637699 SERPINA13PQ6UXR4 307 aa20.33■□□□□ 0.85
CLN3-262ENST00000637699 RSRC2Q7L4I2 434 aaKnown RBP20.33■□□□□ 0.85
CLN3-262ENST00000637699 PDZD3Q86UT5 571 aa20.33■□□□□ 0.85
CLN3-262ENST00000637699 RHBDD1Q8TEB9 315 aa20.33■□□□□ 0.85
CLN3-262ENST00000637699 HEXIM2Q96MH2 286 aaKnown RBP20.33■□□□□ 0.85
CLN3-262ENST00000637699 DNAI2Q9GZS0 605 aa20.33■□□□□ 0.85
CLN3-262ENST00000637699 STRIP2Q9ULQ0 834 aa20.33■□□□□ 0.85
CLN3-262ENST00000637699 GTF3C3Q9Y5Q9 886 aa20.33■□□□□ 0.85
CLN3-262ENST00000637699 ACACAQ13085 2346 aa20.33■□□□□ 0.84
CLN3-262ENST00000637699 CALUO43852 315 aaPredicted RBP20.32■□□□□ 0.84
CLN3-262ENST00000637699 IGLV3-19P01714 112 aa20.32■□□□□ 0.84
CLN3-262ENST00000637699 ATXN1LP0C7T5 689 aaKnown RBP20.32■□□□□ 0.84
CLN3-262ENST00000637699 HLA-EP13747 358 aa20.32■□□□□ 0.84
CLN3-262ENST00000637699 CSNK1EP49674 416 aaKnown RBP20.32■□□□□ 0.84
CLN3-262ENST00000637699 EIF4HQ15056 248 aaKnown RBP20.32■□□□□ 0.84
CLN3-262ENST00000637699 E2F5Q15329 346 aa20.32■□□□□ 0.84
CLN3-262ENST00000637699 RBBP8NLQ8NC74 664 aaPredicted RBP20.32■□□□□ 0.84
CLN3-262ENST00000637699 C1orf216Q8TAB5 229 aa20.32■□□□□ 0.84
CLN3-262ENST00000637699 HNRNPLLQ8WVV9 542 aaKnown RBP20.32■□□□□ 0.84
CLN3-262ENST00000637699 KIAA1522Q9P206 1035 aaPredicted RBP20.32■□□□□ 0.84
CLN3-262ENST00000637699 RAXQ9Y2V3 346 aa20.32■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms