RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 CHFRQ96EP1 664 aa19.06■□□□□ 0.64
CLN3-259ENST00000637551 P2RY13Q9BPV8 354 aa19.06■□□□□ 0.64
CLN3-259ENST00000637551 SYT11Q9BT88 431 aa19.06■□□□□ 0.64
CLN3-259ENST00000637551 FOXQ1Q9C009 403 aa19.06■□□□□ 0.64
CLN3-259ENST00000637551 LINC00597Q9H2U6 94 aa19.06■□□□□ 0.64
CLN3-259ENST00000637551 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP19.06■□□□□ 0.64
CLN3-259ENST00000637551 SLC12A8A0AV02 714 aa19.05■□□□□ 0.64
CLN3-259ENST00000637551 CACNG3O60359 315 aa19.05■□□□□ 0.64
CLN3-259ENST00000637551 CORO1AP31146 461 aaKnown RBP19.05■□□□□ 0.64
CLN3-259ENST00000637551 NOS2P35228 1153 aa19.05■□□□□ 0.64
CLN3-259ENST00000637551 PPP2R5DQ14738 602 aa19.05■□□□□ 0.64
CLN3-259ENST00000637551 GAB4Q2WGN9 574 aa19.05■□□□□ 0.64
CLN3-259ENST00000637551 MPP7Q5T2T1 576 aa19.05■□□□□ 0.64
CLN3-259ENST00000637551 TXNDC11Q6PKC3 985 aa19.05■□□□□ 0.64
CLN3-259ENST00000637551 SARM1Q6SZW1 724 aa19.05■□□□□ 0.64
CLN3-259ENST00000637551 IRF2BP2Q7Z5L9 587 aa19.05■□□□□ 0.64
CLN3-259ENST00000637551 PHF13Q86YI8 300 aaPredicted RBP19.05■□□□□ 0.64
CLN3-259ENST00000637551 ETFBKMTQ8IXQ9 262 aa19.05■□□□□ 0.64
CLN3-259ENST00000637551 CLEC4CQ8WTT0 213 aa19.05■□□□□ 0.64
CLN3-259ENST00000637551 EDEM1Q92611 657 aa19.05■□□□□ 0.64
CLN3-259ENST00000637551 NT5C3BQ969T7 300 aa19.05■□□□□ 0.64
CLN3-259ENST00000637551 PGAP3Q96FM1 320 aaPredicted RBP19.05■□□□□ 0.64
CLN3-259ENST00000637551 SLC39A13Q96H72 371 aa19.05■□□□□ 0.64
CLN3-259ENST00000637551 VCPIP1Q96JH7 1222 aa19.05■□□□□ 0.64
CLN3-259ENST00000637551 DDX50Q9BQ39 737 aaKnown RBP19.05■□□□□ 0.64
CLN3-259ENST00000637551 FBXO4Q9UKT5 387 aa19.05■□□□□ 0.64
CLN3-259ENST00000637551 STAP1Q9ULZ2 295 aa19.05■□□□□ 0.64
CLN3-259ENST00000637551 PAXBP1Q9Y5B6 917 aa19.05■□□□□ 0.64
CLN3-259ENST00000637551 MDM4O15151 490 aa19.04■□□□□ 0.64
CLN3-259ENST00000637551 ATG13O75143 517 aa19.04■□□□□ 0.64
CLN3-259ENST00000637551 PENKP01210 267 aaPredicted RBP19.04■□□□□ 0.64
CLN3-259ENST00000637551 KLKB1P03952 638 aa19.04■□□□□ 0.64
CLN3-259ENST00000637551 ERBB2P04626 1255 aa19.04■□□□□ 0.64
CLN3-259ENST00000637551 CALB1P05937 261 aa19.04■□□□□ 0.64
CLN3-259ENST00000637551 CHRNB2P17787 502 aa19.04■□□□□ 0.64
CLN3-259ENST00000637551 GBP1P32455 592 aa19.04■□□□□ 0.64
CLN3-259ENST00000637551 MATKP42679 507 aa19.04■□□□□ 0.64
CLN3-259ENST00000637551 NSFP46459 744 aaKnown RBP19.04■□□□□ 0.64
CLN3-259ENST00000637551 SLC11A2P49281 568 aa19.04■□□□□ 0.64
CLN3-259ENST00000637551 ZBED6P86452 979 aa19.04■□□□□ 0.64
CLN3-259ENST00000637551 CDK17Q00537 523 aa19.04■□□□□ 0.64
CLN3-259ENST00000637551 CACNA1BQ00975 2339 aa19.04■□□□□ 0.64
CLN3-259ENST00000637551 C1QBPQ07021 282 aaKnown RBP19.04■□□□□ 0.64
CLN3-259ENST00000637551 ZNF528Q3MIS6 628 aa19.04■□□□□ 0.64
CLN3-259ENST00000637551 LY6G5CQ5SRR4 150 aa19.04■□□□□ 0.64
CLN3-259ENST00000637551 ADGRF1Q5T601 910 aa19.04■□□□□ 0.64
CLN3-259ENST00000637551 SFMBT2Q5VUG0 894 aa19.04■□□□□ 0.64
CLN3-259ENST00000637551 RNF43Q68DV7 783 aa19.04■□□□□ 0.64
CLN3-259ENST00000637551 FAM183BPQ6ZVS7 135 aa19.04■□□□□ 0.64
CLN3-259ENST00000637551 XYLT1Q86Y38 959 aa19.04■□□□□ 0.64
CLN3-259ENST00000637551 SPEM1Q8N4L4 309 aa19.04■□□□□ 0.64
CLN3-259ENST00000637551 NDRG1Q92597 394 aaKnown RBP19.04■□□□□ 0.64
CLN3-259ENST00000637551 XPO6Q96QU8 1125 aaKnown RBP19.04■□□□□ 0.64
CLN3-259ENST00000637551 FAM126AQ9BYI3 521 aaPredicted RBP19.04■□□□□ 0.64
CLN3-259ENST00000637551 SLC2A11Q9BYW1 496 aa19.04■□□□□ 0.64
CLN3-259ENST00000637551 IFNKQ9P0W0 207 aa19.04■□□□□ 0.64
CLN3-259ENST00000637551 NUDT5Q9UKK9 219 aa19.04■□□□□ 0.64
CLN3-259ENST00000637551 AGO1Q9UL18 857 aaKnown RBP19.04■□□□□ 0.64
CLN3-259ENST00000637551 CAPN11Q9UMQ6 739 aa19.04■□□□□ 0.64
CLN3-259ENST00000637551 WDR87Q6ZQQ6 2873 aa19.04■□□□□ 0.64
CLN3-259ENST00000637551 LRRC53A6NM62 1247 aa19.03■□□□□ 0.64
CLN3-259ENST00000637551 CHURC1-FNTBB4DL54 471 aa19.03■□□□□ 0.64
CLN3-259ENST00000637551 GFRA2O00451 464 aa19.03■□□□□ 0.64
CLN3-259ENST00000637551 PI15O43692 258 aa19.03■□□□□ 0.64
CLN3-259ENST00000637551 F9P00740 461 aa19.03■□□□□ 0.64
CLN3-259ENST00000637551 CYBBP04839 570 aa19.03■□□□□ 0.64
CLN3-259ENST00000637551 IRF1P10914 325 aa19.03■□□□□ 0.64
CLN3-259ENST00000637551 GZMAP12544 262 aa19.03■□□□□ 0.64
CLN3-259ENST00000637551 OPRD1P41143 372 aa19.03■□□□□ 0.64
CLN3-259ENST00000637551 SOX9P48436 509 aa19.03■□□□□ 0.64
CLN3-259ENST00000637551 TBX4P57082 545 aa19.03■□□□□ 0.64
CLN3-259ENST00000637551 PON2Q15165 354 aa19.03■□□□□ 0.64
CLN3-259ENST00000637551 CLEC16AQ2KHT3 1053 aa19.03■□□□□ 0.64
CLN3-259ENST00000637551 TAF3Q5VWG9 929 aa19.03■□□□□ 0.64
CLN3-259ENST00000637551 OR6B2Q6IFH4 312 aa19.03■□□□□ 0.64
CLN3-259ENST00000637551 DRC7Q8IY82 874 aa19.03■□□□□ 0.64
CLN3-259ENST00000637551 SLC20A1Q8WUM9 679 aa19.03■□□□□ 0.64
CLN3-259ENST00000637551 AGPAT1Q99943 283 aa19.03■□□□□ 0.64
CLN3-259ENST00000637551 PRMT8Q9NR22 394 aaPredicted RBP19.03■□□□□ 0.64
CLN3-259ENST00000637551 SLTMQ9NWH9 1034 aaKnown RBP eCLIP19.03■□□□□ 0.64
CLN3-259ENST00000637551 FBXO10Q9UK96 956 aa19.03■□□□□ 0.64
CLN3-259ENST00000637551 FANCMQ8IYD8 2048 aa19.03■□□□□ 0.64
CLN3-259ENST00000637551 TRUB2O95900 331 aaKnown RBP19.02■□□□□ 0.64
CLN3-259ENST00000637551 APOEP02649 317 aa19.02■□□□□ 0.64
CLN3-259ENST00000637551 CD72P21854 359 aa19.02■□□□□ 0.64
CLN3-259ENST00000637551 HOXA6P31267 233 aa19.02■□□□□ 0.64
CLN3-259ENST00000637551 HNRNPH3P31942 346 aaKnown RBP19.02■□□□□ 0.64
CLN3-259ENST00000637551 GRIA2P42262 883 aa19.02■□□□□ 0.64
CLN3-259ENST00000637551 CCR3P51677 355 aa19.02■□□□□ 0.64
CLN3-259ENST00000637551 ASIC2Q16515 512 aa19.02■□□□□ 0.64
CLN3-259ENST00000637551 NAA35Q5VZE5 725 aa19.02■□□□□ 0.64
CLN3-259ENST00000637551 SPECC1LQ69YQ0 1117 aa19.02■□□□□ 0.64
CLN3-259ENST00000637551 C1orf210Q8IVY1 113 aa19.02■□□□□ 0.64
CLN3-259ENST00000637551 NKD2Q969F2 451 aaPredicted RBP19.02■□□□□ 0.64
CLN3-259ENST00000637551 BTN2A3PQ96KV6 586 aa19.02■□□□□ 0.64
CLN3-259ENST00000637551 PNKPQ96T60 521 aa19.02■□□□□ 0.64
CLN3-259ENST00000637551 LMAN1LQ9HAT1 526 aa19.02■□□□□ 0.64
CLN3-259ENST00000637551 SFMBT1Q9UHJ3 866 aa19.02■□□□□ 0.64
CLN3-259ENST00000637551 NDRG2Q9UN36 371 aaKnown RBP19.02■□□□□ 0.64
CLN3-259ENST00000637551 NAALADL1Q9UQQ1 740 aa19.02■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms