RNA–Protein interactions for RNA: ENST00000636964.1

CLN6-217, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 3,335 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-217ENST00000636964 ACAP1Q15027 740 aa11.94□□□□□ -0.5
CLN6-217ENST00000636964 RTN4RL1Q86UN2 441 aaPredicted RBP11.94□□□□□ -0.5
CLN6-217ENST00000636964 STK32AQ8WU08 396 aa11.94□□□□□ -0.5
CLN6-217ENST00000636964 HNRNPABQ99729 332 aaKnown RBP11.94□□□□□ -0.5
CLN6-217ENST00000636964 SYT15Q9BQS2 421 aa11.94□□□□□ -0.5
CLN6-217ENST00000636964 DDX23Q9BUQ8 820 aaKnown RBP11.94□□□□□ -0.5
CLN6-217ENST00000636964 MAK16Q9BXY0 300 aaKnown RBP11.94□□□□□ -0.5
CLN6-217ENST00000636964 DUSP16Q9BY84 665 aa11.94□□□□□ -0.5
CLN6-217ENST00000636964 PABPC3Q9H361 631 aaKnown RBP11.94□□□□□ -0.5
CLN6-217ENST00000636964 HMX1Q9NP08 348 aaPredicted RBP11.94□□□□□ -0.5
CLN6-217ENST00000636964 STARD7Q9NQZ5 370 aa11.94□□□□□ -0.5
CLN6-217ENST00000636964 ARHGEF3Q9NR81 526 aa11.94□□□□□ -0.5
CLN6-217ENST00000636964 AAASQ9NRG9 546 aa11.94□□□□□ -0.5
CLN6-217ENST00000636964 KRT82Q9NSB4 513 aa11.94□□□□□ -0.5
CLN6-217ENST00000636964 THSD7BQ9C0I4 1608 aa11.94□□□□□ -0.5
CLN6-217ENST00000636964 GNAZP19086 355 aa11.93□□□□□ -0.5
CLN6-217ENST00000636964 KLRC2P26717 231 aa11.93□□□□□ -0.5
CLN6-217ENST00000636964 CACNA2D1P54289 1103 aa11.93□□□□□ -0.5
CLN6-217ENST00000636964 VCPP55072 806 aaKnown RBP11.93□□□□□ -0.5
CLN6-217ENST00000636964 GDF10P55107 478 aa11.93□□□□□ -0.5
CLN6-217ENST00000636964 HDAC4P56524 1084 aa11.93□□□□□ -0.5
CLN6-217ENST00000636964 ADCY1Q08828 1119 aa11.93□□□□□ -0.5
CLN6-217ENST00000636964 GPS1Q13098 491 aa11.93□□□□□ -0.5
CLN6-217ENST00000636964 KRT81Q14533 505 aa11.93□□□□□ -0.5
CLN6-217ENST00000636964 C1orf228Q6PIY5 440 aa11.93□□□□□ -0.5
CLN6-217ENST00000636964 ZC3H18Q86VM9 953 aaKnown RBP11.93□□□□□ -0.5
CLN6-217ENST00000636964 CCDC89Q8N998 374 aa11.93□□□□□ -0.5
CLN6-217ENST00000636964 TMEM30AQ9NV96 361 aa11.93□□□□□ -0.5
CLN6-217ENST00000636964 ZNF623O75123 536 aa11.93□□□□□ -0.5
CLN6-217ENST00000636964 ACSL3O95573 720 aa11.93□□□□□ -0.5
CLN6-217ENST00000636964 GBP1P32455 592 aa11.93□□□□□ -0.5
CLN6-217ENST00000636964 PAPOLAP51003 745 aaKnown RBP11.93□□□□□ -0.5
CLN6-217ENST00000636964 SNX16P57768 344 aa11.93□□□□□ -0.5
CLN6-217ENST00000636964 PITX1P78337 314 aaPredicted RBP11.93□□□□□ -0.5
CLN6-217ENST00000636964 BNIP1Q12981 228 aa11.93□□□□□ -0.5
CLN6-217ENST00000636964 OASLQ15646 514 aaKnown RBP11.93□□□□□ -0.5
CLN6-217ENST00000636964 HP1BP3Q5SSJ5 553 aaPredicted RBP11.93□□□□□ -0.5
CLN6-217ENST00000636964 DENND2CQ68D51 928 aa11.93□□□□□ -0.5
CLN6-217ENST00000636964 SLC30A9Q6PML9 568 aa11.93□□□□□ -0.5
CLN6-217ENST00000636964 CLEC20AQ6ZU45 233 aa11.93□□□□□ -0.5
CLN6-217ENST00000636964 SYDE1Q6ZW31 735 aaPredicted RBP11.93□□□□□ -0.5
CLN6-217ENST00000636964 ARHGAP22Q7Z5H3 698 aa11.93□□□□□ -0.5
CLN6-217ENST00000636964 ALLCQ8N6M5 410 aa11.93□□□□□ -0.5
CLN6-217ENST00000636964 PCED1BQ96HM7 432 aa11.93□□□□□ -0.5
CLN6-217ENST00000636964 SNRNP25Q9BV90 132 aaKnown RBP11.93□□□□□ -0.5
CLN6-217ENST00000636964 STK38LQ9Y2H1 464 aa11.93□□□□□ -0.5
CLN6-217ENST00000636964 SNX3O60493 162 aa11.93□□□□□ -0.5
CLN6-217ENST00000636964 CABYRO75952 493 aa11.93□□□□□ -0.5
CLN6-217ENST00000636964 NPR3P17342 541 aa11.93□□□□□ -0.5
CLN6-217ENST00000636964 PTPN7P35236 360 aa11.93□□□□□ -0.5
CLN6-217ENST00000636964 SLCO1A2P46721 670 aa11.93□□□□□ -0.5
CLN6-217ENST00000636964 IFNAR2P48551 515 aa11.93□□□□□ -0.5
CLN6-217ENST00000636964 RNASELQ05823 741 aaKnown RBP11.93□□□□□ -0.5
CLN6-217ENST00000636964 DPYSL3Q14195 570 aa11.93□□□□□ -0.5
CLN6-217ENST00000636964 BBS12Q6ZW61 710 aa11.93□□□□□ -0.5
CLN6-217ENST00000636964 ECHDC2Q86YB7 292 aa11.93□□□□□ -0.5
CLN6-217ENST00000636964 DEFB106AQ8N104 65 aa11.93□□□□□ -0.5
CLN6-217ENST00000636964 CCDC33Q8N5R6 958 aa11.93□□□□□ -0.5
CLN6-217ENST00000636964 ATP11CQ8NB49 1132 aa11.93□□□□□ -0.5
CLN6-217ENST00000636964 SELENOSQ9BQE4 189 aa11.93□□□□□ -0.5
CLN6-217ENST00000636964 CNOT10Q9H9A5 744 aaKnown RBP11.93□□□□□ -0.5
CLN6-217ENST00000636964 LRRC4Q9HBW1 653 aa11.93□□□□□ -0.5
CLN6-217ENST00000636964 PAPOLBQ9NRJ5 636 aaKnown RBP11.93□□□□□ -0.5
CLN6-217ENST00000636964 XPO1O14980 1071 aaKnown RBP11.92□□□□□ -0.5
CLN6-217ENST00000636964 GM2AP17900 193 aa11.92□□□□□ -0.5
CLN6-217ENST00000636964 GRK4P32298 578 aa11.92□□□□□ -0.5
CLN6-217ENST00000636964 DCAF6Q58WW2 860 aa11.92□□□□□ -0.5
CLN6-217ENST00000636964 RHBDF2Q6PJF5 856 aa11.92□□□□□ -0.5
CLN6-217ENST00000636964 SLC26A9Q7LBE3 791 aa11.92□□□□□ -0.5
CLN6-217ENST00000636964 SLC35B2Q8TB61 432 aa11.92□□□□□ -0.5
CLN6-217ENST00000636964 PXYLP1Q8TE99 480 aa11.92□□□□□ -0.5
CLN6-217ENST00000636964 NAF1Q96HR8 494 aaKnown RBP11.92□□□□□ -0.5
CLN6-217ENST00000636964 TBCBQ99426 244 aa11.92□□□□□ -0.5
CLN6-217ENST00000636964 SLC7A5P2Q9GIP4 190 aa11.92□□□□□ -0.5
CLN6-217ENST00000636964 CDC42EP4Q9H3Q1 356 aaKnown RBP11.92□□□□□ -0.5
CLN6-217ENST00000636964 TMPRSS4Q9NRS4 437 aa11.92□□□□□ -0.5
CLN6-217ENST00000636964 PTCH2Q9Y6C5 1203 aa11.92□□□□□ -0.5
CLN6-217ENST00000636964 BDNFP23560 247 aa11.92□□□□□ -0.5
CLN6-217ENST00000636964 MSH2P43246 934 aa11.92□□□□□ -0.5
CLN6-217ENST00000636964 MGAT5Q09328 741 aa11.92□□□□□ -0.5
CLN6-217ENST00000636964 MTM1Q13496 603 aa11.92□□□□□ -0.5
CLN6-217ENST00000636964 SLMAPQ14BN4 828 aa11.92□□□□□ -0.5
CLN6-217ENST00000636964 KYNUQ16719 465 aa11.92□□□□□ -0.5
CLN6-217ENST00000636964 HFE2Q6ZVN8 426 aa11.92□□□□□ -0.5
CLN6-217ENST00000636964 UNC45BQ8IWX7 931 aa11.92□□□□□ -0.5
CLN6-217ENST00000636964 REM2Q8IYK8 340 aaPredicted RBP11.92□□□□□ -0.5
CLN6-217ENST00000636964 FITM2Q8N6M3 262 aa11.92□□□□□ -0.5
CLN6-217ENST00000636964 ANKS4BQ8N8V4 417 aa11.92□□□□□ -0.5
CLN6-217ENST00000636964 SPATA18Q8TC71 538 aa11.92□□□□□ -0.5
CLN6-217ENST00000636964 HSFY1Q96LI6 401 aa11.92□□□□□ -0.5
CLN6-217ENST00000636964 TMEM209Q96SK2 561 aa11.92□□□□□ -0.5
CLN6-217ENST00000636964 DNAI2Q9GZS0 605 aa11.92□□□□□ -0.5
CLN6-217ENST00000636964 DHX35Q9H5Z1 703 aaKnown RBP11.92□□□□□ -0.5
CLN6-217ENST00000636964 ASB3Q9Y575 518 aa11.92□□□□□ -0.5
CLN6-217ENST00000636964 HEY1Q9Y5J3 304 aa11.92□□□□□ -0.5
CLN6-217ENST00000636964 GOLGA8MH3BSY2 632 aa11.91□□□□□ -0.5
CLN6-217ENST00000636964 RIPK2O43353 540 aa11.91□□□□□ -0.5
CLN6-217ENST00000636964 B4GALT3O60512 393 aa11.91□□□□□ -0.5
CLN6-217ENST00000636964 RARGP13631 454 aa11.91□□□□□ -0.5
CLN6-217ENST00000636964 ATP2A2P16615 1042 aaKnown RBP11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms