RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 KCNE4Q8WWG9 221 aa15.33■□□□□ 0.04
CLN3-249ENST00000636685 RFFLQ8WZ73 363 aa15.33■□□□□ 0.04
CLN3-249ENST00000636685 RAD54LQ92698 747 aa15.33■□□□□ 0.04
CLN3-249ENST00000636685 HVCN1Q96D96 273 aa15.33■□□□□ 0.04
CLN3-249ENST00000636685 PIWIL1Q96J94 861 aaKnown RBP15.33■□□□□ 0.04
CLN3-249ENST00000636685 ZNF578Q96N58 590 aaPredicted RBP15.33■□□□□ 0.04
CLN3-249ENST00000636685 CBWD1Q9BRT8 395 aa15.33■□□□□ 0.04
CLN3-249ENST00000636685 STRA6Q9BX79 667 aa15.33■□□□□ 0.04
CLN3-249ENST00000636685 BTBD1Q9H0C5 482 aa15.33■□□□□ 0.04
CLN3-249ENST00000636685 PCIF1Q9H4Z3 704 aa15.33■□□□□ 0.04
CLN3-249ENST00000636685 FLNCQ14315 2725 aa15.33■□□□□ 0.04
CLN3-249ENST00000636685 BOD1L1Q8NFC6 3051 aa15.32■□□□□ 0.04
CLN3-249ENST00000636685 MYO9AB2RTY4 2548 aa15.32■□□□□ 0.04
CLN3-249ENST00000636685 FAM92AA1XBS5 289 aa15.32■□□□□ 0.04
CLN3-249ENST00000636685 MDM4O15151 490 aa15.32■□□□□ 0.04
CLN3-249ENST00000636685 TACC1O75410 805 aa15.32■□□□□ 0.04
CLN3-249ENST00000636685 LDHAP00338 332 aaKnown RBP15.32■□□□□ 0.04
CLN3-249ENST00000636685 PENKP01210 267 aaPredicted RBP15.32■□□□□ 0.04
CLN3-249ENST00000636685 TNNC2P02585 160 aa15.32■□□□□ 0.04
CLN3-249ENST00000636685 MPOP05164 745 aa15.32■□□□□ 0.04
CLN3-249ENST00000636685 IGHV4-34P06331 123 aa15.32■□□□□ 0.04
CLN3-249ENST00000636685 RACK1P63244 317 aaKnown RBP15.32■□□□□ 0.04
CLN3-249ENST00000636685 GOLGA8FQ08AF8 430 aa15.32■□□□□ 0.04
CLN3-249ENST00000636685 GOLGA8DPQ0D2H9 430 aa15.32■□□□□ 0.04
CLN3-249ENST00000636685 ILKQ13418 452 aa15.32■□□□□ 0.04
CLN3-249ENST00000636685 FYB2Q5VWT5 728 aa15.32■□□□□ 0.04
CLN3-249ENST00000636685 SERPINA13PQ6UXR4 307 aa15.32■□□□□ 0.04
CLN3-249ENST00000636685 Q6ZNB5 142 aa15.32■□□□□ 0.04
CLN3-249ENST00000636685 PAQR9Q6ZVX9 377 aa15.32■□□□□ 0.04
CLN3-249ENST00000636685 ANKS1BQ7Z6G8 1248 aa15.32■□□□□ 0.04
CLN3-249ENST00000636685 SNRNP27Q8WVK2 155 aaKnown RBP15.32■□□□□ 0.04
CLN3-249ENST00000636685 ACCSQ96QU6 501 aa15.32■□□□□ 0.04
CLN3-249ENST00000636685 MED10Q9BTT4 135 aa15.32■□□□□ 0.04
CLN3-249ENST00000636685 CIPCQ9C0C6 399 aa15.32■□□□□ 0.04
CLN3-249ENST00000636685 CLEC4EQ9ULY5 219 aa15.32■□□□□ 0.04
CLN3-249ENST00000636685 BSNQ9UPA5 3926 aa15.32■□□□□ 0.04
CLN3-249ENST00000636685 A8MXQ7 604 aa15.31■□□□□ 0.04
CLN3-249ENST00000636685 MT-CO3P00414 261 aa15.31■□□□□ 0.04
CLN3-249ENST00000636685 CKMT2P17540 419 aa15.31■□□□□ 0.04
CLN3-249ENST00000636685 GARTP22102 1010 aa15.31■□□□□ 0.04
CLN3-249ENST00000636685 EPHA8P29322 1005 aaPredicted RBP15.31■□□□□ 0.04
CLN3-249ENST00000636685 ATP5C1P36542 298 aaKnown RBP15.31■□□□□ 0.04
CLN3-249ENST00000636685 NFATC3Q12968 1075 aa15.31■□□□□ 0.04
CLN3-249ENST00000636685 BNIP3Q12983 259 aa15.31■□□□□ 0.04
CLN3-249ENST00000636685 CAMK2GQ13555 558 aaPredicted RBP15.31■□□□□ 0.04
CLN3-249ENST00000636685 TMEM215Q68D42 235 aa15.31■□□□□ 0.04
CLN3-249ENST00000636685 FAM35AQ86V20 835 aa15.31■□□□□ 0.04
CLN3-249ENST00000636685 ZNF366Q8N895 744 aa15.31■□□□□ 0.04
CLN3-249ENST00000636685 CALML4Q96GE6 196 aa15.31■□□□□ 0.04
CLN3-249ENST00000636685 FAM117AQ9C073 453 aa15.31■□□□□ 0.04
CLN3-249ENST00000636685 DMAP1Q9NPF5 467 aaPredicted RBP15.31■□□□□ 0.04
CLN3-249ENST00000636685 OSER1Q9NX31 292 aa15.31■□□□□ 0.04
CLN3-249ENST00000636685 TBC1D7Q9P0N9 293 aa15.31■□□□□ 0.04
CLN3-249ENST00000636685 NUDT5Q9UKK9 219 aa15.31■□□□□ 0.04
CLN3-249ENST00000636685 EXOC7Q9UPT5 735 aa15.31■□□□□ 0.04
CLN3-249ENST00000636685 HEMK1Q9Y5R4 338 aaPredicted RBP15.31■□□□□ 0.04
CLN3-249ENST00000636685 ANAPC15P60006 121 aa15.3■□□□□ 0.04
CLN3-249ENST00000636685 RPS14P62263 151 aaKnown RBP15.3■□□□□ 0.04
CLN3-249ENST00000636685 DUOXA2Q1HG44 320 aa15.3■□□□□ 0.04
CLN3-249ENST00000636685 L1TD1Q5T7N2 865 aaKnown RBP15.3■□□□□ 0.04
CLN3-249ENST00000636685 KIAA0895LQ68EN5 471 aa15.3■□□□□ 0.04
CLN3-249ENST00000636685 TEP1Q99973 2627 aaKnown RBP15.3■□□□□ 0.04
CLN3-249ENST00000636685 MRPL44Q9H9J2 332 aaKnown RBP15.3■□□□□ 0.04
CLN3-249ENST00000636685 EBF2Q9HAK2 575 aa15.3■□□□□ 0.04
CLN3-249ENST00000636685 TLR8Q9NR97 1041 aaKnown RBP15.3■□□□□ 0.04
CLN3-249ENST00000636685 COMMD8Q9NX08 183 aa15.3■□□□□ 0.04
CLN3-249ENST00000636685 ADAMTS1Q9UHI8 967 aa15.3■□□□□ 0.04
CLN3-249ENST00000636685 LRRK2Q5S007 2527 aa15.3■□□□□ 0.04
CLN3-249ENST00000636685 ATP8B3O60423 1300 aa15.29■□□□□ 0.04
CLN3-249ENST00000636685 A0A1W2PPC4 97 aa15.29■□□□□ 0.04
CLN3-249ENST00000636685 TERTO14746 1132 aaKnown RBP15.29■□□□□ 0.04
CLN3-249ENST00000636685 WNT9AO14904 365 aa15.29■□□□□ 0.04
CLN3-249ENST00000636685 PRPF6O94906 941 aaKnown RBP15.29■□□□□ 0.04
CLN3-249ENST00000636685 CST3P01034 146 aaPredicted RBP15.29■□□□□ 0.04
CLN3-249ENST00000636685 KLKB1P03952 638 aa15.29■□□□□ 0.04
CLN3-249ENST00000636685 UBA7P41226 1012 aa15.29■□□□□ 0.04
CLN3-249ENST00000636685 NEK4P51957 841 aa15.29■□□□□ 0.04
CLN3-249ENST00000636685 GABREP78334 506 aa15.29■□□□□ 0.04
CLN3-249ENST00000636685 EIF4HQ15056 248 aaKnown RBP15.29■□□□□ 0.04
CLN3-249ENST00000636685 C6orf132Q5T0Z8 1188 aa15.29■□□□□ 0.04
CLN3-249ENST00000636685 DYMQ7RTS9 669 aa15.29■□□□□ 0.04
CLN3-249ENST00000636685 FAM184AQ8NB25 1140 aa15.29■□□□□ 0.04
CLN3-249ENST00000636685 ZMIZ2Q8NF64 920 aa15.29■□□□□ 0.04
CLN3-249ENST00000636685 SGK2Q9HBY8 427 aa15.29■□□□□ 0.04
CLN3-249ENST00000636685 CYLDQ9NQC7 956 aa15.29■□□□□ 0.04
CLN3-249ENST00000636685 GDF3Q9NR23 364 aa15.29■□□□□ 0.04
CLN3-249ENST00000636685 AASDHPPTQ9NRN7 309 aa15.29■□□□□ 0.04
CLN3-249ENST00000636685 ANKMY1Q9P2S6 941 aa15.29■□□□□ 0.04
CLN3-249ENST00000636685 NOTCH2Q04721 2471 aa15.29■□□□□ 0.04
CLN3-249ENST00000636685 TLN1Q9Y490 2541 aaKnown RBP15.28■□□□□ 0.04
CLN3-249ENST00000636685 FAM47DPA6NHR8 397 aa15.28■□□□□ 0.04
CLN3-249ENST00000636685 YKT6O15498 198 aa15.28■□□□□ 0.04
CLN3-249ENST00000636685 SLC26A4O43511 780 aa15.28■□□□□ 0.04
CLN3-249ENST00000636685 AP1G2O75843 785 aa15.28■□□□□ 0.04
CLN3-249ENST00000636685 STC2O76061 302 aa15.28■□□□□ 0.04
CLN3-249ENST00000636685 BEST1O76090 585 aa15.28■□□□□ 0.04
CLN3-249ENST00000636685 DNTTP04053 509 aa15.28■□□□□ 0.04
CLN3-249ENST00000636685 C7P10643 843 aa15.28■□□□□ 0.04
CLN3-249ENST00000636685 PLA2G4AP47712 749 aa15.28■□□□□ 0.04
CLN3-249ENST00000636685 CASP5P51878 434 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms