RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 PLK2Q9NYY3 685 aa19.3■□□□□ 0.68
CLN3-241ENST00000635861 THAP10Q9P2Z0 257 aaPredicted RBP19.3■□□□□ 0.68
CLN3-241ENST00000635861 SUSD2Q9UGT4 822 aa19.3■□□□□ 0.68
CLN3-241ENST00000635861 AGO1Q9UL18 857 aaKnown RBP19.3■□□□□ 0.68
CLN3-241ENST00000635861 GOLGA6L4A6NEF3 574 aa19.29■□□□□ 0.68
CLN3-241ENST00000635861 PPP1R2P41236 205 aa19.29■□□□□ 0.68
CLN3-241ENST00000635861 ATXN3P54252 364 aaPredicted RBP19.29■□□□□ 0.68
CLN3-241ENST00000635861 GFPT1Q06210 699 aaPredicted RBP19.29■□□□□ 0.68
CLN3-241ENST00000635861 BST2Q10589 180 aaKnown RBP19.29■□□□□ 0.68
CLN3-241ENST00000635861 UAP1L1Q3KQV9 507 aa19.29■□□□□ 0.68
CLN3-241ENST00000635861 CBWD6Q4V339 395 aa19.29■□□□□ 0.68
CLN3-241ENST00000635861 CBWD3Q5JTY5 395 aa19.29■□□□□ 0.68
CLN3-241ENST00000635861 CBWD5Q5RIA9 395 aa19.29■□□□□ 0.68
CLN3-241ENST00000635861 ANKS1BQ7Z6G8 1248 aa19.29■□□□□ 0.68
CLN3-241ENST00000635861 TATDN2Q93075 761 aa19.29■□□□□ 0.68
CLN3-241ENST00000635861 ZNF419Q96HQ0 510 aaPredicted RBP19.29■□□□□ 0.68
CLN3-241ENST00000635861 MRGPRX1Q96LB2 322 aa19.29■□□□□ 0.68
CLN3-241ENST00000635861 TIGD1Q96MW7 591 aa19.29■□□□□ 0.68
CLN3-241ENST00000635861 METTL14Q9HCE5 456 aaKnown RBP19.29■□□□□ 0.68
CLN3-241ENST00000635861 CACNA2D2Q9NY47 1150 aa19.29■□□□□ 0.68
CLN3-241ENST00000635861 ARMCX3Q9UH62 379 aaPredicted RBP19.29■□□□□ 0.68
CLN3-241ENST00000635861 TSPAN16Q9UKR8 245 aa19.29■□□□□ 0.68
CLN3-241ENST00000635861 HBS1LQ9Y450 684 aaKnown RBP19.29■□□□□ 0.68
CLN3-241ENST00000635861 NFE2L3Q9Y4A8 694 aa19.29■□□□□ 0.68
CLN3-241ENST00000635861 STON1Q9Y6Q2 735 aa19.29■□□□□ 0.68
CLN3-241ENST00000635861 NDUFS2O75306 463 aa19.28■□□□□ 0.68
CLN3-241ENST00000635861 LATS1O95835 1130 aa19.28■□□□□ 0.68
CLN3-241ENST00000635861 CFIP05156 583 aa19.28■□□□□ 0.68
CLN3-241ENST00000635861 SYPP08247 313 aa19.28■□□□□ 0.68
CLN3-241ENST00000635861 VDRP11473 427 aa19.28■□□□□ 0.68
CLN3-241ENST00000635861 SYCP2LQ5T4T6 812 aa19.28■□□□□ 0.68
CLN3-241ENST00000635861 HDDC3Q8N4P3 179 aa19.28■□□□□ 0.68
CLN3-241ENST00000635861 BHMTQ93088 406 aa19.28■□□□□ 0.68
CLN3-241ENST00000635861 EEF2KMTQ96G04 330 aa19.28■□□□□ 0.68
CLN3-241ENST00000635861 PIWIL1Q96J94 861 aaKnown RBP19.28■□□□□ 0.68
CLN3-241ENST00000635861 LRRC4Q9HBW1 653 aa19.28■□□□□ 0.68
CLN3-241ENST00000635861 GDPD2Q9HCC8 539 aa19.28■□□□□ 0.68
CLN3-241ENST00000635861 CYP8B1Q9UNU6 501 aa19.28■□□□□ 0.68
CLN3-241ENST00000635861 ATXN2Q99700 1313 aaKnown RBP19.28■□□□□ 0.68
CLN3-241ENST00000635861 SLC12A8A0AV02 714 aa19.27■□□□□ 0.68
CLN3-241ENST00000635861 GIPC1O14908 333 aa19.27■□□□□ 0.68
CLN3-241ENST00000635861 PMM2O15305 246 aa19.27■□□□□ 0.68
CLN3-241ENST00000635861 TIMM44O43615 452 aa19.27■□□□□ 0.68
CLN3-241ENST00000635861 KRT37O76014 449 aa19.27■□□□□ 0.68
CLN3-241ENST00000635861 SETSIPP0DME0 302 aa19.27■□□□□ 0.68
CLN3-241ENST00000635861 MAPK8P45983 427 aa19.27■□□□□ 0.68
CLN3-241ENST00000635861 PDE4CQ08493 712 aa19.27■□□□□ 0.68
CLN3-241ENST00000635861 SEMA3BQ13214 749 aa19.27■□□□□ 0.68
CLN3-241ENST00000635861 STIM1Q13586 685 aa19.27■□□□□ 0.68
CLN3-241ENST00000635861 HNRNPDQ14103 355 aaKnown RBP19.27■□□□□ 0.68
CLN3-241ENST00000635861 TRIP4Q15650 581 aaPredicted RBP19.27■□□□□ 0.68
CLN3-241ENST00000635861 GOLGA7BQ2TAP0 167 aa19.27■□□□□ 0.68
CLN3-241ENST00000635861 MPPE1Q53F39 396 aa19.27■□□□□ 0.68
CLN3-241ENST00000635861 ANKRD40Q6AI12 368 aa19.27■□□□□ 0.68
CLN3-241ENST00000635861 DENND1CQ8IV53 801 aa19.27■□□□□ 0.68
CLN3-241ENST00000635861 SLC41A1Q8IVJ1 513 aa19.27■□□□□ 0.68
CLN3-241ENST00000635861 KCTD13Q8WZ19 329 aa19.27■□□□□ 0.68
CLN3-241ENST00000635861 SMARCE1Q969G3 411 aa19.27■□□□□ 0.68
CLN3-241ENST00000635861 SLC35C1Q96A29 364 aa19.27■□□□□ 0.68
CLN3-241ENST00000635861 HSPA12BQ96MM6 686 aa19.27■□□□□ 0.68
CLN3-241ENST00000635861 IRX2Q9BZI1 471 aaPredicted RBP19.27■□□□□ 0.68
CLN3-241ENST00000635861 ULBP1Q9BZM6 244 aa19.27■□□□□ 0.68
CLN3-241ENST00000635861 CNGB3Q9NQW8 809 aa19.27■□□□□ 0.68
CLN3-241ENST00000635861 RAD54BQ9Y620 910 aa19.27■□□□□ 0.68
CLN3-241ENST00000635861 CFAP47Q6ZTR5 3102 aa19.27■□□□□ 0.67
CLN3-241ENST00000635861 HMBSP08397 361 aa19.26■□□□□ 0.67
CLN3-241ENST00000635861 GNSP15586 552 aa19.26■□□□□ 0.67
CLN3-241ENST00000635861 CD6P30203 668 aa19.26■□□□□ 0.67
CLN3-241ENST00000635861 HARS2P49590 506 aaKnown RBP19.26■□□□□ 0.67
CLN3-241ENST00000635861 GEN1Q17RS7 908 aa19.26■□□□□ 0.67
CLN3-241ENST00000635861 WDR45BQ5MNZ6 344 aa19.26■□□□□ 0.67
CLN3-241ENST00000635861 BHLHA9Q7RTU4 235 aa19.26■□□□□ 0.67
CLN3-241ENST00000635861 ELOA2Q8IYF1 753 aaPredicted RBP19.26■□□□□ 0.67
CLN3-241ENST00000635861 UBR7Q8N806 425 aa19.26■□□□□ 0.67
CLN3-241ENST00000635861 TRIML1Q8N9V2 468 aa19.26■□□□□ 0.67
CLN3-241ENST00000635861 ENGASEQ8NFI3 743 aa19.26■□□□□ 0.67
CLN3-241ENST00000635861 RNF139Q8WU17 664 aa19.26■□□□□ 0.67
CLN3-241ENST00000635861 PRDM16Q9HAZ2 1276 aa19.26■□□□□ 0.67
CLN3-241ENST00000635861 ABCC13Q9NSE7 274 aa19.26■□□□□ 0.67
CLN3-241ENST00000635861 ELOVL2Q9NXB9 296 aa19.26■□□□□ 0.67
CLN3-241ENST00000635861 USP36Q9P275 1121 aaKnown RBP19.26■□□□□ 0.67
CLN3-241ENST00000635861 STOML2Q9UJZ1 356 aa19.26■□□□□ 0.67
CLN3-241ENST00000635861 WASF3Q9UPY6 502 aa19.26■□□□□ 0.67
CLN3-241ENST00000635861 MUC22E2RYF6 1773 aaPredicted RBP19.26■□□□□ 0.67
CLN3-241ENST00000635861 AKAP13Q12802 2813 aa19.26■□□□□ 0.67
CLN3-241ENST00000635861 ARHGAP33O14559 1287 aa19.25■□□□□ 0.67
CLN3-241ENST00000635861 PSMA7O14818 248 aa19.25■□□□□ 0.67
CLN3-241ENST00000635861 OPHN1O60890 802 aa19.25■□□□□ 0.67
CLN3-241ENST00000635861 PROS1P07225 676 aa19.25■□□□□ 0.67
CLN3-241ENST00000635861 PAEPP09466 180 aa19.25■□□□□ 0.67
CLN3-241ENST00000635861 OXTRP30559 389 aa19.25■□□□□ 0.67
CLN3-241ENST00000635861 STILQ15468 1287 aa19.25■□□□□ 0.67
CLN3-241ENST00000635861 FUT11Q495W5 492 aa19.25■□□□□ 0.67
CLN3-241ENST00000635861 FOXR2Q6PJQ5 311 aa19.25■□□□□ 0.67
CLN3-241ENST00000635861 KIAA1324Q6UXG2 1013 aaKnown RBP19.25■□□□□ 0.67
CLN3-241ENST00000635861 PIP4P1Q86T03 277 aa19.25■□□□□ 0.67
CLN3-241ENST00000635861 SIX6OS1Q8N1H7 587 aa19.25■□□□□ 0.67
CLN3-241ENST00000635861 DEFB124Q8NES8 71 aa19.25■□□□□ 0.67
CLN3-241ENST00000635861 CADM4Q8NFZ8 388 aa19.25■□□□□ 0.67
CLN3-241ENST00000635861 DDI1Q8WTU0 396 aa19.25■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms