RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 CGAP01215 116 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 MYL3P08590 195 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 NBPF7P0C2Y1 421 aaPredicted RBP1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 ATXN1LP0C7T5 689 aaKnown RBP1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 CTSAP10619 480 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 PIM1P11309 404 aaPredicted RBP1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 FGF3P11487 239 aaPredicted RBP1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 XRCC6P12956 609 aaKnown RBP eCLIP1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 PEX2P28328 305 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 PPIFP30405 207 aaKnown RBP1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 HOXA11P31270 313 aaPredicted RBP1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 PRKAR1BP31321 381 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 THBS4P35443 961 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 CPA2P48052 419 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 SLC11A2P49281 568 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 MTHFSP49914 203 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 LOXL3P58215 753 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 RPS13P62277 151 aaKnown RBP1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 NKX6-1P78426 367 aaPredicted RBP1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 RPL36AP83881 106 aaKnown RBP1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 PSG6Q00889 435 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 CFHR1Q03591 330 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 STK3Q13188 491 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 GRM3Q14832 879 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 CYP1B1Q16678 543 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 MGAT5BQ3V5L5 792 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 SLC9C1Q4G0N8 1177 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 COBLL1Q53SF7 1204 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 C3orf38Q5JPI3 329 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 MANEAQ5SRI9 462 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 CC2D1BQ5T0F9 858 aaKnown RBP1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 TMEM65Q6PI78 240 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 OVCH2Q7RTZ1 564 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 PPP1R32Q7Z5V6 425 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 CAND1Q86VP6 1230 aaKnown RBP1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 ZNF280BQ86YH2 543 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 TCEAL8Q8IYN2 117 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 SPARTQ8N0X7 666 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 FBXL14Q8N1E6 418 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 TMEM199Q8N511 208 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 CCDC33Q8N5R6 958 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 PLBD2Q8NHP8 589 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 TTC8Q8TAM2 541 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 ZNF398Q8TD17 642 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 SMCR8Q8TEV9 937 aaPredicted RBP1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 PNISRQ8TF01 805 aaKnown RBP1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 TMEM171Q8WVE6 324 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 LRTOMTQ8WZ04 291 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 PPP2R3CQ969Q6 453 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 TIFAQ96CG3 184 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 PRR25Q96S07 402 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 PPP1R9BQ96SB3 815 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 PTDSS2Q9BVG9 487 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 SCNM1Q9BWG6 230 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 LRRC27Q9C0I9 530 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 MYLK2Q9H1R3 596 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 PRDM11Q9NQV5 511 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 OBP2AQ9NY56 170 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 CHPF2Q9P2E5 772 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 HESX1Q9UBX0 185 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 ICAM5Q9UMF0 924 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 CORO2BQ9UQ03 480 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 SHOC2Q9UQ13 582 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 CEP83Q9Y592 693 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 ATP7AQ04656 1500 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 ARHGAP5Q13017 1502 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 USP19O94966 1318 aa1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 COL16A1Q07092 1604 aaPredicted RBP1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 PHRF1Q9P1Y6 1649 aaKnown RBP1.33□□□□□ -2.2
SMARCB1-209ENST00000635578 XRN1Q8IZH2 1706 aaKnown RBP1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 SIPA1L2Q9P2F8 1722 aaPredicted RBP1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 TEX14Q8IWB6 1497 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 LTN1O94822 1766 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 A0A088AWK7 358 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 BTBD19C9JJ37 291 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 H7C4K7 107 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 PYCARD-AS1I3L0S3 204 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 GOLIM4O00461 696 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 CES2O00748 559 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 ACOT8O14734 319 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 TPP1O14773 563 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 SRGAP2O75044 1071 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 CNOT3O75175 753 aaKnown RBP1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 NDUFB8O95169 186 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 PAPSS2O95340 614 aaPredicted RBP1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 PRKCBP05771 671 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 THP07101 528 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 CYP2C9P11712 490 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 MYF5P13349 255 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 NPR1P16066 1061 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 TPH1P17752 444 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 ADORA2AP29274 412 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 LRPAP1P30533 357 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 ARRB2P32121 409 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 ARFIP2P53365 341 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 GAS1P54826 345 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 FAM193AP78312 1265 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 TCF15Q12870 199 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 SLC29A2Q14542 456 aa1.32□□□□□ -2.2
SMARCB1-209ENST00000635578 CNGA2Q16280 664 aa1.32□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms