RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 LAMTOR5O43504 91 aa21.57■■□□□ 1.04
CLN3-240ENST00000631023 GRAP2O75791 330 aa21.57■■□□□ 1.04
CLN3-240ENST00000631023 EGFP01133 1207 aa21.57■■□□□ 1.04
CLN3-240ENST00000631023 IGLV3-27P01718 113 aa21.57■■□□□ 1.04
CLN3-240ENST00000631023 CYBBP04839 570 aa21.57■■□□□ 1.04
CLN3-240ENST00000631023 TYRP14679 529 aa21.57■■□□□ 1.04
CLN3-240ENST00000631023 GBP1P32455 592 aa21.57■■□□□ 1.04
CLN3-240ENST00000631023 PBX1P40424 430 aa21.57■■□□□ 1.04
CLN3-240ENST00000631023 SLC11A2P49281 568 aa21.57■■□□□ 1.04
CLN3-240ENST00000631023 MTAPQ13126 283 aa21.57■■□□□ 1.04
CLN3-240ENST00000631023 ANGPT1Q15389 498 aa21.57■■□□□ 1.04
CLN3-240ENST00000631023 ASIC2Q16515 512 aa21.57■■□□□ 1.04
CLN3-240ENST00000631023 SFMBT2Q5VUG0 894 aa21.57■■□□□ 1.04
CLN3-240ENST00000631023 NAIF1Q69YI7 327 aaPredicted RBP21.57■■□□□ 1.04
CLN3-240ENST00000631023 NUDT18Q6ZVK8 323 aa21.57■■□□□ 1.04
CLN3-240ENST00000631023 IRF2BP2Q7Z5L9 587 aa21.57■■□□□ 1.04
CLN3-240ENST00000631023 SLC2A13Q96QE2 648 aa21.57■■□□□ 1.04
CLN3-240ENST00000631023 NUCKS1Q9H1E3 243 aaKnown RBP21.57■■□□□ 1.04
CLN3-240ENST00000631023 AIPL1Q9NZN9 384 aa21.57■■□□□ 1.04
CLN3-240ENST00000631023 DEC1Q9P2X7 70 aa21.57■■□□□ 1.04
CLN3-240ENST00000631023 NEDD8-MDP1E9PL57 170 aa21.56■■□□□ 1.04
CLN3-240ENST00000631023 TRUB2O95900 331 aaKnown RBP21.56■■□□□ 1.04
CLN3-240ENST00000631023 APODP05090 189 aa21.56■■□□□ 1.04
CLN3-240ENST00000631023 NSFP46459 744 aaKnown RBP21.56■■□□□ 1.04
CLN3-240ENST00000631023 SLC6A11P48066 632 aa21.56■■□□□ 1.04
CLN3-240ENST00000631023 PPP2R5DQ14738 602 aa21.56■■□□□ 1.04
CLN3-240ENST00000631023 ADGRF1Q5T601 910 aa21.56■■□□□ 1.04
CLN3-240ENST00000631023 XYLT1Q86Y38 959 aa21.56■■□□□ 1.04
CLN3-240ENST00000631023 SPEM1Q8N4L4 309 aa21.56■■□□□ 1.04
CLN3-240ENST00000631023 NAT16Q8N8M0 369 aa21.56■■□□□ 1.04
CLN3-240ENST00000631023 ADAM32Q8TC27 787 aa21.56■■□□□ 1.04
CLN3-240ENST00000631023 AZIN2Q96A70 460 aa21.56■■□□□ 1.04
CLN3-240ENST00000631023 XPO4Q9C0E2 1151 aaKnown RBP21.56■■□□□ 1.04
CLN3-240ENST00000631023 TTYH3Q9C0H2 523 aa21.56■■□□□ 1.04
CLN3-240ENST00000631023 RRN3Q9NYV6 651 aa21.56■■□□□ 1.04
CLN3-240ENST00000631023 A0A1W2PQJ5 194 aa21.55■■□□□ 1.04
CLN3-240ENST00000631023 ATG13O75143 517 aa21.55■■□□□ 1.04
CLN3-240ENST00000631023 UNGP13051 313 aaPredicted RBP21.55■■□□□ 1.04
CLN3-240ENST00000631023 MMP8P22894 467 aa21.55■■□□□ 1.04
CLN3-240ENST00000631023 NOS2P35228 1153 aa21.55■■□□□ 1.04
CLN3-240ENST00000631023 TCF15Q12870 199 aa21.55■■□□□ 1.04
CLN3-240ENST00000631023 FAM102AQ5T9C2 384 aaPredicted RBP21.55■■□□□ 1.04
CLN3-240ENST00000631023 TAC4Q86UU9 113 aa21.55■■□□□ 1.04
CLN3-240ENST00000631023 C12orf40Q86WS4 652 aa21.55■■□□□ 1.04
CLN3-240ENST00000631023 ETFBKMTQ8IXQ9 262 aa21.55■■□□□ 1.04
CLN3-240ENST00000631023 DDX50Q9BQ39 737 aaKnown RBP21.55■■□□□ 1.04
CLN3-240ENST00000631023 FAM204AQ9H8W3 233 aa21.55■■□□□ 1.04
CLN3-240ENST00000631023 ARHGEF4Q9NR80 690 aa21.55■■□□□ 1.04
CLN3-240ENST00000631023 STOML2Q9UJZ1 356 aa21.55■■□□□ 1.04
CLN3-240ENST00000631023 H0Y858 1186 aa21.54■■□□□ 1.04
CLN3-240ENST00000631023 CACNG3O60359 315 aa21.54■■□□□ 1.04
CLN3-240ENST00000631023 TULP3O75386 442 aa21.54■■□□□ 1.04
CLN3-240ENST00000631023 DAB1O75553 588 aa21.54■■□□□ 1.04
CLN3-240ENST00000631023 IGLV3-25P01717 112 aa21.54■■□□□ 1.04
CLN3-240ENST00000631023 APOEP02649 317 aa21.54■■□□□ 1.04
CLN3-240ENST00000631023 SLC2A3P11169 496 aa21.54■■□□□ 1.04
CLN3-240ENST00000631023 TNFAIP3P21580 790 aa21.54■■□□□ 1.04
CLN3-240ENST00000631023 GRIA2P42262 883 aa21.54■■□□□ 1.04
CLN3-240ENST00000631023 MATKP42679 507 aa21.54■■□□□ 1.04
CLN3-240ENST00000631023 CCR3P51677 355 aa21.54■■□□□ 1.04
CLN3-240ENST00000631023 RNASE9P60153 205 aaKnown RBP21.54■■□□□ 1.04
CLN3-240ENST00000631023 CENPCQ03188 943 aa21.54■■□□□ 1.04
CLN3-240ENST00000631023 CLEC16AQ2KHT3 1053 aa21.54■■□□□ 1.04
CLN3-240ENST00000631023 MMS22LQ6ZRQ5 1243 aa21.54■■□□□ 1.04
CLN3-240ENST00000631023 FAM217AQ8IXS0 508 aa21.54■■□□□ 1.04
CLN3-240ENST00000631023 SLC30A5Q8TAD4 765 aa21.54■■□□□ 1.04
CLN3-240ENST00000631023 SLC39A13Q96H72 371 aa21.54■■□□□ 1.04
CLN3-240ENST00000631023 FCRL2Q96LA5 508 aaPredicted RBP21.54■■□□□ 1.04
CLN3-240ENST00000631023 PCDHB18PQ96TA0 734 aa21.54■■□□□ 1.04
CLN3-240ENST00000631023 DNAJC17Q9NVM6 304 aaKnown RBP21.54■■□□□ 1.04
CLN3-240ENST00000631023 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP21.54■■□□□ 1.04
CLN3-240ENST00000631023 SLC12A6Q9UHW9 1150 aa21.54■■□□□ 1.04
CLN3-240ENST00000631023 IRAK2O43187 625 aa21.53■■□□□ 1.04
CLN3-240ENST00000631023 KAT7O95251 611 aa21.53■■□□□ 1.04
CLN3-240ENST00000631023 MPPE1Q53F39 396 aa21.53■■□□□ 1.04
CLN3-240ENST00000631023 C2CD6Q53TS8 623 aa21.53■■□□□ 1.04
CLN3-240ENST00000631023 PPP1R2P3Q6NXS1 205 aa21.53■■□□□ 1.04
CLN3-240ENST00000631023 Q6ZS52 159 aa21.53■■□□□ 1.04
CLN3-240ENST00000631023 DDI1Q8WTU0 396 aa21.53■■□□□ 1.04
CLN3-240ENST00000631023 BHMTQ93088 406 aa21.53■■□□□ 1.04
CLN3-240ENST00000631023 IRX2Q9BZI1 471 aaPredicted RBP21.53■■□□□ 1.04
CLN3-240ENST00000631023 TMEM51Q9NW97 253 aa21.53■■□□□ 1.04
CLN3-240ENST00000631023 SLTMQ9NWH9 1034 aaKnown RBP eCLIP21.53■■□□□ 1.04
CLN3-240ENST00000631023 DDIT4Q9NX09 232 aa21.53■■□□□ 1.04
CLN3-240ENST00000631023 FBXO4Q9UKT5 387 aa21.53■■□□□ 1.04
CLN3-240ENST00000631023 STAP1Q9ULZ2 295 aa21.53■■□□□ 1.04
CLN3-240ENST00000631023 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP21.53■■□□□ 1.04
CLN3-240ENST00000631023 FANCMQ8IYD8 2048 aa21.53■■□□□ 1.04
CLN3-240ENST00000631023 A0A0A0MRY4 1105 aa21.53■■□□□ 1.04
CLN3-240ENST00000631023 FAM170AA1A519 330 aa21.53■■□□□ 1.04
CLN3-240ENST00000631023 TBC1D3BA6NDS4 549 aa21.53■■□□□ 1.04
CLN3-240ENST00000631023 GOLGA8SH3BPF8 625 aa21.53■■□□□ 1.04
CLN3-240ENST00000631023 ACSL4O60488 711 aa21.53■■□□□ 1.04
CLN3-240ENST00000631023 RNF40O75150 1001 aa21.53■■□□□ 1.04
CLN3-240ENST00000631023 CALB1P05937 261 aa21.53■■□□□ 1.04
CLN3-240ENST00000631023 PRKCIP41743 596 aa21.53■■□□□ 1.04
CLN3-240ENST00000631023 TNFRSF4P43489 277 aa21.53■■□□□ 1.04
CLN3-240ENST00000631023 CXCL12P48061 93 aa21.53■■□□□ 1.04
CLN3-240ENST00000631023 KLHL30Q0D2K2 578 aa21.53■■□□□ 1.04
CLN3-240ENST00000631023 GRAMD4Q6IC98 578 aa21.53■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms