RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 NPAS4Q8IUM7 802 aa16.27■□□□□ 0.2
CPSF1-213ENST00000620219 PDCD6IPQ8WUM4 868 aaKnown RBP16.27■□□□□ 0.2
CPSF1-213ENST00000620219 ARHGEF2Q92974 986 aaKnown RBP16.27■□□□□ 0.2
CPSF1-213ENST00000620219 PAK5Q9P286 719 aa16.27■□□□□ 0.2
CPSF1-213ENST00000620219 VANGL2Q9ULK5 521 aa16.27■□□□□ 0.2
CPSF1-213ENST00000620219 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.27■□□□□ 0.2
CPSF1-213ENST00000620219 AMHP03971 560 aa16.27■□□□□ 0.19
CPSF1-213ENST00000620219 GPR15P49685 360 aa16.27■□□□□ 0.19
CPSF1-213ENST00000620219 IFI35P80217 286 aaPredicted RBP16.27■□□□□ 0.19
CPSF1-213ENST00000620219 SLC25A52Q3SY17 297 aa16.27■□□□□ 0.19
CPSF1-213ENST00000620219 ATPAF2Q8N5M1 289 aa16.27■□□□□ 0.19
CPSF1-213ENST00000620219 AUTS2Q8WXX7 1259 aa16.27■□□□□ 0.19
CPSF1-213ENST00000620219 FAXDC2Q96IV6 333 aa16.27■□□□□ 0.19
CPSF1-213ENST00000620219 LBHD1Q9BQE6 289 aaPredicted RBP16.27■□□□□ 0.19
CPSF1-213ENST00000620219 TTPALQ9BTX7 342 aa16.27■□□□□ 0.19
CPSF1-213ENST00000620219 NRDE2Q9H7Z3 1164 aa16.27■□□□□ 0.19
CPSF1-213ENST00000620219 GRHL1Q9NZI5 618 aa16.27■□□□□ 0.19
CPSF1-213ENST00000620219 JCHAINP01591 159 aa16.27■□□□□ 0.19
CPSF1-213ENST00000620219 TNFRSF8P28908 595 aa16.27■□□□□ 0.19
CPSF1-213ENST00000620219 LBX1P52954 281 aa16.27■□□□□ 0.19
CPSF1-213ENST00000620219 IRX4P78413 519 aa16.27■□□□□ 0.19
CPSF1-213ENST00000620219 FOXR1Q6PIV2 292 aa16.27■□□□□ 0.19
CPSF1-213ENST00000620219 NECAB2Q7Z6G3 386 aa16.27■□□□□ 0.19
CPSF1-213ENST00000620219 PPIL6Q8IXY8 311 aa16.27■□□□□ 0.19
CPSF1-213ENST00000620219 DIS3LQ8TF46 1054 aaKnown RBP16.27■□□□□ 0.19
CPSF1-213ENST00000620219 ATXN7L3BQ96GX2 97 aa16.27■□□□□ 0.19
CPSF1-213ENST00000620219 KLF6Q99612 283 aaPredicted RBP16.27■□□□□ 0.19
CPSF1-213ENST00000620219 SP110Q9HB58 689 aa16.27■□□□□ 0.19
CPSF1-213ENST00000620219 WHRNQ9P202 907 aa16.27■□□□□ 0.19
CPSF1-213ENST00000620219 WDR90Q96KV7 1748 aa16.26■□□□□ 0.19
CPSF1-213ENST00000620219 SPAG7O75391 227 aa16.26■□□□□ 0.19
CPSF1-213ENST00000620219 CCR1P32246 355 aa16.26■□□□□ 0.19
CPSF1-213ENST00000620219 IRAK1P51617 712 aa16.26■□□□□ 0.19
CPSF1-213ENST00000620219 PCSK7Q16549 785 aa16.26■□□□□ 0.19
CPSF1-213ENST00000620219 DPF3Q92784 378 aa16.26■□□□□ 0.19
CPSF1-213ENST00000620219 PLXNB2O15031 1838 aa16.26■□□□□ 0.19
CPSF1-213ENST00000620219 HDAC4P56524 1084 aa16.26■□□□□ 0.19
CPSF1-213ENST00000620219 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16.26■□□□□ 0.191e-8■□□□□ 8.1
CPSF1-213ENST00000620219 STAU1O95793 577 aaKnown RBP16.26■□□□□ 0.19
CPSF1-213ENST00000620219 CDH5P33151 784 aaPredicted RBP16.26■□□□□ 0.19
CPSF1-213ENST00000620219 DAOAP59103 153 aa16.26■□□□□ 0.19
CPSF1-213ENST00000620219 PDE1BQ01064 536 aa16.26■□□□□ 0.19
CPSF1-213ENST00000620219 DPYSL3Q14195 570 aa16.26■□□□□ 0.19
CPSF1-213ENST00000620219 SPARCL1Q14515 664 aa16.26■□□□□ 0.19
CPSF1-213ENST00000620219 PSMD5Q16401 504 aa16.26■□□□□ 0.19
CPSF1-213ENST00000620219 OR10T2Q8NGX3 314 aa16.26■□□□□ 0.19
CPSF1-213ENST00000620219 PEBP4Q96S96 227 aa16.26■□□□□ 0.19
CPSF1-213ENST00000620219 WDR81Q562E7 1941 aa16.26■□□□□ 0.19
CPSF1-213ENST00000620219 A0A1W2PQH9 124 aa16.25■□□□□ 0.19
CPSF1-213ENST00000620219 USP12O75317 370 aa16.25■□□□□ 0.19
CPSF1-213ENST00000620219 CST5P28325 142 aaPredicted RBP16.25■□□□□ 0.19
CPSF1-213ENST00000620219 RPL22P35268 128 aaKnown RBP16.25■□□□□ 0.19
CPSF1-213ENST00000620219 SLC11A1P49279 550 aa16.25■□□□□ 0.19
CPSF1-213ENST00000620219 RPL10AP62906 217 aaKnown RBP16.25■□□□□ 0.19
CPSF1-213ENST00000620219 PPP2R2AP63151 447 aa16.25■□□□□ 0.19
CPSF1-213ENST00000620219 ZDHHC24Q6UX98 284 aa16.25■□□□□ 0.19
CPSF1-213ENST00000620219 LRRC43Q8N309 656 aa16.25■□□□□ 0.19
CPSF1-213ENST00000620219 RYBPQ8N488 228 aaPredicted RBP16.25■□□□□ 0.19
CPSF1-213ENST00000620219 UBR7Q8N806 425 aa16.25■□□□□ 0.19
CPSF1-213ENST00000620219 THOC1Q96FV9 657 aaKnown RBP16.25■□□□□ 0.19
CPSF1-213ENST00000620219 SMC6Q96SB8 1091 aa16.25■□□□□ 0.19
CPSF1-213ENST00000620219 RGS18Q9NS28 235 aa16.25■□□□□ 0.19
CPSF1-213ENST00000620219 ECHS1P30084 290 aa16.25■□□□□ 0.19
CPSF1-213ENST00000620219 CLLU1OSQ5K130 101 aa16.25■□□□□ 0.19
CPSF1-213ENST00000620219 GPRIN1Q7Z2K8 1008 aa16.25■□□□□ 0.19
CPSF1-213ENST00000620219 ATP11CQ8NB49 1132 aa16.25■□□□□ 0.19
CPSF1-213ENST00000620219 ZNF558Q96NG5 402 aa16.25■□□□□ 0.19
CPSF1-213ENST00000620219 FSD1LQ9BXM9 530 aa16.25■□□□□ 0.19
CPSF1-213ENST00000620219 GPR62Q9BZJ7 368 aa16.25■□□□□ 0.19
CPSF1-213ENST00000620219 TMBIM4Q9HC24 238 aa16.25■□□□□ 0.19
CPSF1-213ENST00000620219 PCDH9Q9HC56 1237 aa16.25■□□□□ 0.19
CPSF1-213ENST00000620219 FAM53CQ9NYF3 392 aa16.25■□□□□ 0.19
CPSF1-213ENST00000620219 C9IYK1 514 aa16.25■□□□□ 0.19
CPSF1-213ENST00000620219 RARGP13631 454 aa16.25■□□□□ 0.19
CPSF1-213ENST00000620219 CA4P22748 312 aa16.25■□□□□ 0.19
CPSF1-213ENST00000620219 TBX4P57082 545 aa16.25■□□□□ 0.19
CPSF1-213ENST00000620219 PLD1Q13393 1074 aa16.25■□□□□ 0.19
CPSF1-213ENST00000620219 ALKAL1Q6UXT8 129 aa16.25■□□□□ 0.19
CPSF1-213ENST00000620219 NUP93Q8N1F7 819 aa16.25■□□□□ 0.19
CPSF1-213ENST00000620219 STK32AQ8WU08 396 aa16.25■□□□□ 0.19
CPSF1-213ENST00000620219 TSNARE1Q96NA8 513 aa16.25■□□□□ 0.19
CPSF1-213ENST00000620219 FBXO44Q9H4M3 255 aa16.25■□□□□ 0.19
CPSF1-213ENST00000620219 A0A087WUV0 522 aaPredicted RBP16.25■□□□□ 0.19
CPSF1-213ENST00000620219 TYW5A2RUC4 315 aaKnown RBP16.25■□□□□ 0.19
CPSF1-213ENST00000620219 TBX18O95935 607 aa16.25■□□□□ 0.19
CPSF1-213ENST00000620219 CSF2RAP15509 400 aa16.25■□□□□ 0.19
CPSF1-213ENST00000620219 SYN1P17600 705 aa16.25■□□□□ 0.19
CPSF1-213ENST00000620219 ERCC2P18074 760 aa16.25■□□□□ 0.19
CPSF1-213ENST00000620219 TUBP50607 506 aa16.25■□□□□ 0.19
CPSF1-213ENST00000620219 TAF10Q12962 218 aa16.25■□□□□ 0.19
CPSF1-213ENST00000620219 PTK6Q13882 451 aa16.25■□□□□ 0.19
CPSF1-213ENST00000620219 LGSNQ5TDP6 509 aa16.25■□□□□ 0.19
CPSF1-213ENST00000620219 SUSD3Q96L08 255 aa16.25■□□□□ 0.19
CPSF1-213ENST00000620219 ZC3H7BQ9UGR2 993 aaKnown RBP16.25■□□□□ 0.19
CPSF1-213ENST00000620219 COMMD10Q9Y6G5 202 aa16.25■□□□□ 0.19
CPSF1-213ENST00000620219 LCTP09848 1927 aa16.24■□□□□ 0.19
CPSF1-213ENST00000620219 DNALI1O14645 258 aaPredicted RBP16.24■□□□□ 0.19
CPSF1-213ENST00000620219 RIPK2O43353 540 aa16.24■□□□□ 0.19
CPSF1-213ENST00000620219 MX2P20592 715 aa16.24■□□□□ 0.19
CPSF1-213ENST00000620219 USP41Q3LFD5 358 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms