RNA–Protein interactions for RNA: ENST00000616033.4

MSH6-214, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 3,429 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-214ENST00000616033 PTPN20Q4JDL3 420 aa13.59□□□□□ -0.23
MSH6-214ENST00000616033 CCDC92Q53HC0 331 aaPredicted RBP13.59□□□□□ -0.23
MSH6-214ENST00000616033 FAM102AQ5T9C2 384 aaPredicted RBP13.59□□□□□ -0.23
MSH6-214ENST00000616033 TTC13Q8NBP0 860 aa13.59□□□□□ -0.23
MSH6-214ENST00000616033 TMIGD2Q96BF3 282 aa13.59□□□□□ -0.23
MSH6-214ENST00000616033 CDRT15Q96T59 188 aa13.59□□□□□ -0.23
MSH6-214ENST00000616033 SEPT10Q9P0V9 454 aa13.59□□□□□ -0.23
MSH6-214ENST00000616033 POLIQ9UNA4 740 aa13.59□□□□□ -0.23
MSH6-214ENST00000616033 TSC22D4Q9Y3Q8 395 aa13.59□□□□□ -0.23
MSH6-214ENST00000616033 VILLO15195 856 aa13.59□□□□□ -0.23
MSH6-214ENST00000616033 SPTLC1O15269 473 aa13.59□□□□□ -0.23
MSH6-214ENST00000616033 RFPL1O75677 317 aa13.59□□□□□ -0.23
MSH6-214ENST00000616033 C4BPAP04003 597 aaKnown RBP13.59□□□□□ -0.23
MSH6-214ENST00000616033 TFAP2AP05549 437 aa13.59□□□□□ -0.23
MSH6-214ENST00000616033 BPGMP07738 259 aa13.59□□□□□ -0.23
MSH6-214ENST00000616033 SH2D4BQ5SQS7 431 aa13.59□□□□□ -0.23
MSH6-214ENST00000616033 HHIPL2Q6UWX4 724 aa13.59□□□□□ -0.23
MSH6-214ENST00000616033 ARFGAP1Q8N6T3 406 aa13.59□□□□□ -0.23
MSH6-214ENST00000616033 HAPLN3Q96S86 360 aa13.59□□□□□ -0.23
MSH6-214ENST00000616033 MAGEB5Q9BZ81 275 aa13.59□□□□□ -0.23
MSH6-214ENST00000616033 USP29Q9HBJ7 922 aa13.59□□□□□ -0.23
MSH6-214ENST00000616033 DDX56Q9NY93 547 aaKnown RBP13.59□□□□□ -0.23
MSH6-214ENST00000616033 CNTN3Q9P232 1028 aa13.59□□□□□ -0.23
MSH6-214ENST00000616033 NHSQ6T4R5 1651 aa13.58□□□□□ -0.23
MSH6-214ENST00000616033 TNRC6CQ9HCJ0 1690 aaKnown RBP13.58□□□□□ -0.23
MSH6-214ENST00000616033 ALDH1B1P30837 517 aa13.58□□□□□ -0.23
MSH6-214ENST00000616033 CPOXP36551 454 aa13.58□□□□□ -0.23
MSH6-214ENST00000616033 HPCAP84074 193 aa13.58□□□□□ -0.23
MSH6-214ENST00000616033 PLOD1Q02809 727 aaPredicted RBP13.58□□□□□ -0.23
MSH6-214ENST00000616033 SLC18A2Q05940 514 aa13.58□□□□□ -0.23
MSH6-214ENST00000616033 CC2D2BQ6DHV5 1058 aa13.58□□□□□ -0.23
MSH6-214ENST00000616033 CMC1Q7Z7K0 106 aa13.58□□□□□ -0.23
MSH6-214ENST00000616033 SNX31Q8N9S9 440 aa13.58□□□□□ -0.23
MSH6-214ENST00000616033 HERC5Q9UII4 1024 aaKnown RBP13.58□□□□□ -0.23
MSH6-214ENST00000616033 AFG3L2Q9Y4W6 797 aa13.58□□□□□ -0.23
MSH6-214ENST00000616033 LAMB2P55268 1798 aa13.58□□□□□ -0.24
MSH6-214ENST00000616033 SYNJ2BP-COX16A0A087WUM0 186 aa13.58□□□□□ -0.24
MSH6-214ENST00000616033 EXTL3O43909 919 aa13.58□□□□□ -0.24
MSH6-214ENST00000616033 ETFBP38117 255 aa13.58□□□□□ -0.24
MSH6-214ENST00000616033 RGS2P41220 211 aa13.58□□□□□ -0.24
MSH6-214ENST00000616033 STT3AP46977 705 aa13.58□□□□□ -0.24
MSH6-214ENST00000616033 CYLC2Q14093 348 aaPredicted RBP13.58□□□□□ -0.24
MSH6-214ENST00000616033 FLOT2Q14254 428 aa13.58□□□□□ -0.24
MSH6-214ENST00000616033 TRIM72Q6ZMU5 477 aa13.58□□□□□ -0.24
MSH6-214ENST00000616033 ZNF778Q96MU6 729 aa13.58□□□□□ -0.24
MSH6-214ENST00000616033 COX16Q9P0S2 106 aa13.58□□□□□ -0.24
MSH6-214ENST00000616033 TXNDC16Q9P2K2 825 aa13.58□□□□□ -0.24
MSH6-214ENST00000616033 TMCO1Q9UM00 188 aa13.58□□□□□ -0.24
MSH6-214ENST00000616033 HSPA4LO95757 839 aa13.58□□□□□ -0.24
MSH6-214ENST00000616033 ITGAXP20702 1163 aa13.58□□□□□ -0.24
MSH6-214ENST00000616033 HOXA10P31260 410 aaPredicted RBP13.58□□□□□ -0.24
MSH6-214ENST00000616033 CCR10P46092 362 aa13.58□□□□□ -0.24
MSH6-214ENST00000616033 RPL5P46777 297 aaKnown RBP13.58□□□□□ -0.24
MSH6-214ENST00000616033 C16orf72Q14CZ0 275 aa13.58□□□□□ -0.24
MSH6-214ENST00000616033 OR6B2Q6IFH4 312 aa13.58□□□□□ -0.24
MSH6-214ENST00000616033 UNC5AQ6ZN44 842 aa13.58□□□□□ -0.24
MSH6-214ENST00000616033 TAS1R3Q7RTX0 852 aa13.58□□□□□ -0.24
MSH6-214ENST00000616033 ZNF341Q9BYN7 854 aa13.58□□□□□ -0.24
MSH6-214ENST00000616033 HAPLN2Q9GZV7 340 aa13.58□□□□□ -0.24
MSH6-214ENST00000616033 DHX35Q9H5Z1 703 aaKnown RBP13.58□□□□□ -0.24
MSH6-214ENST00000616033 SSU72Q9NP77 194 aaKnown RBP13.58□□□□□ -0.24
MSH6-214ENST00000616033 THAP1Q9NVV9 213 aa13.58□□□□□ -0.24
MSH6-214ENST00000616033 USP18Q9UMW8 372 aa13.58□□□□□ -0.24
MSH6-214ENST00000616033 GNEQ9Y223 722 aaKnown RBP13.58□□□□□ -0.24
MSH6-214ENST00000616033 TTLL3Q9Y4R7 772 aa13.58□□□□□ -0.24
MSH6-214ENST00000616033 TEX264Q9Y6I9 313 aa13.58□□□□□ -0.24
MSH6-214ENST00000616033 WNK3Q9BYP7 1800 aa13.57□□□□□ -0.24
MSH6-214ENST00000616033 SDR42E2A6NKP2 422 aa13.57□□□□□ -0.24
MSH6-214ENST00000616033 TPP1O14773 563 aa13.57□□□□□ -0.24
MSH6-214ENST00000616033 CRTAMO95727 393 aa13.57□□□□□ -0.24
MSH6-214ENST00000616033 HMGCRP04035 888 aa13.57□□□□□ -0.24
MSH6-214ENST00000616033 KRT7P08729 469 aa13.57□□□□□ -0.24
MSH6-214ENST00000616033 CDH15P55291 814 aa13.57□□□□□ -0.24
MSH6-214ENST00000616033 ADGRF2Q8IZF7 708 aa13.57□□□□□ -0.24
MSH6-214ENST00000616033 WDTC1Q8N5D0 677 aa13.57□□□□□ -0.24
MSH6-214ENST00000616033 TFB1MQ8WVM0 346 aaKnown RBP13.57□□□□□ -0.24
MSH6-214ENST00000616033 CCT7Q99832 543 aa13.57□□□□□ -0.24
MSH6-214ENST00000616033 DHRS4Q9BTZ2 278 aa13.57□□□□□ -0.24
MSH6-214ENST00000616033 HDAC4P56524 1084 aa13.57□□□□□ -0.24
MSH6-214ENST00000616033 ITPRIPL1Q6GPH6 555 aa13.57□□□□□ -0.24
MSH6-214ENST00000616033 UGT2A3Q6UWM9 527 aa13.57□□□□□ -0.24
MSH6-214ENST00000616033 C15orf52Q6ZUT6 534 aaKnown RBP13.57□□□□□ -0.24
MSH6-214ENST00000616033 RNF169Q8NCN4 708 aa13.57□□□□□ -0.24
MSH6-214ENST00000616033 C7orf26Q96N11 449 aa13.57□□□□□ -0.24
MSH6-214ENST00000616033 LENG8Q96PV6 779 aaPredicted RBP13.57□□□□□ -0.24
MSH6-214ENST00000616033 CPXM1Q96SM3 734 aa13.57□□□□□ -0.24
MSH6-214ENST00000616033 PPCSQ9HAB8 311 aa13.57□□□□□ -0.24
MSH6-214ENST00000616033 WDR27A2RRH5 827 aa13.57□□□□□ -0.24
MSH6-214ENST00000616033 GOLGA8TH3BQL2 631 aa13.57□□□□□ -0.24
MSH6-214ENST00000616033 TYK2P29597 1187 aa13.57□□□□□ -0.24
MSH6-214ENST00000616033 BCAR1P56945 870 aa13.57□□□□□ -0.24
MSH6-214ENST00000616033 FSTL1Q12841 308 aa13.57□□□□□ -0.24
MSH6-214ENST00000616033 SH3D19Q5HYK7 790 aa13.57□□□□□ -0.24
MSH6-214ENST00000616033 BBS12Q6ZW61 710 aa13.57□□□□□ -0.24
MSH6-214ENST00000616033 SNX32Q86XE0 403 aa13.57□□□□□ -0.24
MSH6-214ENST00000616033 ADPGKQ9BRR6 497 aa13.57□□□□□ -0.24
MSH6-214ENST00000616033 TMEM39BQ9GZU3 492 aa13.57□□□□□ -0.24
MSH6-214ENST00000616033 NACA2Q9H009 215 aa13.57□□□□□ -0.24
MSH6-214ENST00000616033 ARMC7Q9H6L4 198 aa13.57□□□□□ -0.24
MSH6-214ENST00000616033 ITGBL1O95965 494 aaPredicted RBP13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms