RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 MYL1P05976 194 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 C1SP09871 688 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 CISD3P0C7P0 127 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 ACO1P21399 889 aaKnown RBP6.61□□□□□ -1.35
CUX1-220ENST00000607092 GRIA4P48058 902 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 NASPP49321 788 aaPredicted RBP6.61□□□□□ -1.35
CUX1-220ENST00000607092 TPMTP51580 245 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 BCAT1P54687 386 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 MAP3K7CLP57077 242 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 ENPEPQ07075 957 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 ENPP2Q13822 863 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 KNOP1Q1ED39 458 aaKnown RBP6.61□□□□□ -1.35
CUX1-220ENST00000607092 COL28A1Q2UY09 1125 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 FUT11Q495W5 492 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 TTC31Q49AM3 519 aaPredicted RBP6.61□□□□□ -1.35
CUX1-220ENST00000607092 DCAF12L1Q5VU92 463 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 SERPINA13PQ6UXR4 307 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 Q6ZNB5 142 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 DBX2Q6ZNG2 339 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 LRRC69Q6ZNQ3 347 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 TPGS1Q6ZTW0 290 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 RSRC2Q7L4I2 434 aaKnown RBP6.61□□□□□ -1.35
CUX1-220ENST00000607092 CCDC186Q7Z3E2 898 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 TMPRSS12Q86WS5 348 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 MIB1Q86YT6 1006 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 SFTPA1Q8IWL2 248 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 FUKQ8N0W3 1084 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 CPXM2Q8N436 756 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 DEFB119Q8N690 84 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 PDILTQ8N807 584 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 ZSWIM2Q8NEG5 633 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 PARD3BQ8TEW8 1205 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 CCDC47Q96A33 483 aaKnown RBP6.61□□□□□ -1.35
CUX1-220ENST00000607092 NXPE2Q96DL1 559 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 CLIC6Q96NY7 704 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 UBL7Q96S82 380 aaPredicted RBP6.61□□□□□ -1.35
CUX1-220ENST00000607092 HNRNPABQ99729 332 aaKnown RBP6.61□□□□□ -1.35
CUX1-220ENST00000607092 ARID3AQ99856 593 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 TMUB1Q9BVT8 246 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 NT5C1AQ9BXI3 368 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 PANK2Q9BZ23 570 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 UBXN6Q9BZV1 441 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 DPEP3Q9H4B8 488 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 SGK2Q9HBY8 427 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 OLA1Q9NTK5 396 aaKnown RBP6.61□□□□□ -1.35
CUX1-220ENST00000607092 MTPAPQ9NVV4 582 aaKnown RBP eCLIP6.61□□□□□ -1.35
CUX1-220ENST00000607092 ELOVL2Q9NXB9 296 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 FAM13BQ9NYF5 915 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 METRNQ9UJH8 293 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 NAGPAQ9UK23 515 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 NCKAP1Q9Y2A7 1128 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 FRMD4BQ9Y2L6 1034 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 PCDHGA1Q9Y5H4 931 aa6.61□□□□□ -1.35
CUX1-220ENST00000607092 PCDH15Q96QU1 1955 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 PTPRQQ9UMZ3 2332 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 PDXKO00764 312 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 MAPK13O15264 365 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 SPTLC2O15270 562 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 RRP8O43159 456 aaKnown RBP6.6□□□□□ -1.35
CUX1-220ENST00000607092 PAPSS1O43252 624 aaPredicted RBP6.6□□□□□ -1.35
CUX1-220ENST00000607092 TGFB1I1O43294 461 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 GREM1O60565 184 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 CUTAO60888 179 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 YEATS4O95619 227 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 LATS1O95835 1130 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 ASS1P00966 412 aaKnown RBP6.6□□□□□ -1.35
CUX1-220ENST00000607092 DNTTP04053 509 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 ATP5BP06576 529 aaKnown RBP6.6□□□□□ -1.35
CUX1-220ENST00000607092 EPHX1P07099 455 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 SLFN14P0C7P3 912 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 HLA-EP13747 358 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 SYT1P21579 422 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 CLCN1P35523 988 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 ABCG1P45844 678 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 HARS2P49590 506 aaKnown RBP6.6□□□□□ -1.35
CUX1-220ENST00000607092 CCT8P50990 548 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 KIF11P52732 1056 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 NDST1P52848 882 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 CACNA2D1P54289 1103 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 MFAP3P55082 362 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 C21orf59P57076 290 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 FAM193AP78312 1265 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 CEBPZQ03701 1054 aaKnown RBP6.6□□□□□ -1.35
CUX1-220ENST00000607092 INCA1Q0VD86 236 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 C19orf57Q0VDD7 668 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 CUL4AQ13619 759 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 HLA-BQ31612 363 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 ZACNQ401N2 412 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 MPPE1Q53F39 396 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 SOWAHCQ53LP3 525 aaPredicted RBP6.6□□□□□ -1.35
CUX1-220ENST00000607092 C6orf118Q5T5N4 469 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 ATL3Q6DD88 541 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 SCARA5Q6ZMJ2 495 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 PAQR9Q6ZVX9 377 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 INTS8Q75QN2 995 aaKnown RBP6.6□□□□□ -1.35
CUX1-220ENST00000607092 ADAT2Q7Z6V5 191 aaKnown RBP6.6□□□□□ -1.35
CUX1-220ENST00000607092 ACOT1Q86TX2 421 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 CCDC117Q8IWD4 279 aaPredicted RBP6.6□□□□□ -1.35
CUX1-220ENST00000607092 CEP57L1Q8IYX8 460 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 OXR1Q8N573 874 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms