RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 ASIC3Q9UHC3 531 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 LZTS1Q9Y250 596 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 EFR3BQ9Y2G0 817 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 ACTL7BQ9Y614 415 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 LINC01553A4QN01 128 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 LRCH4O75427 683 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 ABLIM3O94929 683 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 VNN2O95498 520 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 ABHD2P08910 425 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 CTSAP10619 480 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 ATF2P15336 505 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 DRD4P21917 467 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 DNAJB2P25686 324 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 MATKP42679 507 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 PTPN9P43378 593 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 KCNJ1P48048 391 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 TUFMP49411 452 aaKnown RBP12.15□□□□□ -0.46
VRK3-223ENST00000601341 AUHQ13825 339 aaKnown RBP12.15□□□□□ -0.46
VRK3-223ENST00000601341 ITIH4Q14624 930 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 SHHQ15465 462 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 MGAT5BQ3V5L5 792 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 CCDC14Q49A88 953 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 LACTB2Q53H82 288 aaPredicted RBP12.15□□□□□ -0.46
VRK3-223ENST00000601341 CPLX4Q7Z7G2 160 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 SUGP1Q8IWZ8 645 aaKnown RBP12.15□□□□□ -0.46
VRK3-223ENST00000601341 CNPY4Q8N129 248 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 NUP93Q8N1F7 819 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 MICALL1Q8N3F8 863 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 ATXN2LQ8WWM7 1075 aaKnown RBP12.15□□□□□ -0.46
VRK3-223ENST00000601341 NDRG1Q92597 394 aaKnown RBP12.15□□□□□ -0.46
VRK3-223ENST00000601341 SEC16BQ96JE7 1060 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 CABS1Q96KC9 395 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 CFAP57Q96MR6 1250 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 SEPT5Q99719 369 aaPredicted RBP12.15□□□□□ -0.46
VRK3-223ENST00000601341 DDX23Q9BUQ8 820 aaKnown RBP12.15□□□□□ -0.46
VRK3-223ENST00000601341 TRIM62Q9BVG3 475 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 FRMD8P1Q9BZ68 369 aaPredicted RBP12.15□□□□□ -0.46
VRK3-223ENST00000601341 OSBPL8Q9BZF1 889 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 PHACTR1Q9C0D0 580 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 ZBP1Q9H171 429 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 CDC42EP4Q9H3Q1 356 aaKnown RBP12.15□□□□□ -0.46
VRK3-223ENST00000601341 KDM4CQ9H3R0 1056 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 POPDC2Q9HBU9 364 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 HSFX1Q9UBD0 423 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 SLC27A5Q9Y2P5 690 aa12.15□□□□□ -0.46
VRK3-223ENST00000601341 PTPRSQ13332 1948 aa12.15□□□□□ -0.47
VRK3-223ENST00000601341 YJEFN3A6XGL0 299 aa12.14□□□□□ -0.47
VRK3-223ENST00000601341 E7ENQ6 273 aa12.14□□□□□ -0.47
VRK3-223ENST00000601341 LILRB3O75022 631 aa12.14□□□□□ -0.47
VRK3-223ENST00000601341 DAB1O75553 588 aa12.14□□□□□ -0.47
VRK3-223ENST00000601341 TJP3O95049 919 aa12.14□□□□□ -0.47
VRK3-223ENST00000601341 CHN1P15882 459 aa12.14□□□□□ -0.47
VRK3-223ENST00000601341 NOS2P35228 1153 aa12.14□□□□□ -0.47
VRK3-223ENST00000601341 PCK1P35558 622 aa12.14□□□□□ -0.47
VRK3-223ENST00000601341 ACTN3Q08043 901 aaPredicted RBP12.14□□□□□ -0.47
VRK3-223ENST00000601341 RAB33AQ14088 237 aa12.14□□□□□ -0.47
VRK3-223ENST00000601341 DAB2IPQ5VWQ8 1189 aa12.14□□□□□ -0.47
VRK3-223ENST00000601341 TRNP1Q6NT89 227 aa12.14□□□□□ -0.47
VRK3-223ENST00000601341 CCDC121Q6ZUS5 278 aa12.14□□□□□ -0.47
VRK3-223ENST00000601341 POLNQ7Z5Q5 900 aa12.14□□□□□ -0.47
VRK3-223ENST00000601341 DEFB106AQ8N104 65 aa12.14□□□□□ -0.47
VRK3-223ENST00000601341 TTC9BQ8N6N2 239 aa12.14□□□□□ -0.47
VRK3-223ENST00000601341 SCAMP5Q8TAC9 235 aa12.14□□□□□ -0.47
VRK3-223ENST00000601341 C1orf54Q8WWF1 131 aa12.14□□□□□ -0.47
VRK3-223ENST00000601341 AUTS2Q8WXX7 1259 aa12.14□□□□□ -0.47
VRK3-223ENST00000601341 SPATA17Q96L03 361 aa12.14□□□□□ -0.47
VRK3-223ENST00000601341 CEP295NLQ96MC4 621 aa12.14□□□□□ -0.47
VRK3-223ENST00000601341 SLC2A13Q96QE2 648 aa12.14□□□□□ -0.47
VRK3-223ENST00000601341 NSRP1Q9H0G5 558 aaKnown RBP12.14□□□□□ -0.47
VRK3-223ENST00000601341 FBXO44Q9H4M3 255 aa12.14□□□□□ -0.47
VRK3-223ENST00000601341 RXFP1Q9HBX9 757 aa12.14□□□□□ -0.47
VRK3-223ENST00000601341 INTS9Q9NV88 658 aaKnown RBP12.14□□□□□ -0.47
VRK3-223ENST00000601341 TMEM51Q9NW97 253 aa12.14□□□□□ -0.47
VRK3-223ENST00000601341 DDX56Q9NY93 547 aaKnown RBP12.14□□□□□ -0.47
VRK3-223ENST00000601341 LGALS13Q9UHV8 139 aa12.14□□□□□ -0.47
VRK3-223ENST00000601341 MAFFQ9ULX9 164 aa12.14□□□□□ -0.47
VRK3-223ENST00000601341 DRG1Q9Y295 367 aaKnown RBP12.14□□□□□ -0.47
VRK3-223ENST00000601341 GOLGA6L7A0A1B0GV03 622 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 CAPN9O14815 690 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 RTN3O95197 1032 aaPredicted RBP12.13□□□□□ -0.47
VRK3-223ENST00000601341 LTFP02788 710 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 RB1P06400 928 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 KRT7P08729 469 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 RALAP11233 206 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 GPR15P49685 360 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 TAS2R40P59535 323 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 ATP11AP98196 1134 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 UBE3AQ05086 875 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 STAT4Q14765 748 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 SKIDA1Q1XH10 827 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 C15orf59Q2T9L4 293 aaPredicted RBP12.13□□□□□ -0.47
VRK3-223ENST00000601341 SLC25A52Q3SY17 297 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 DCAF6Q58WW2 860 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 DENND5BQ6ZUT9 1274 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 TMC7Q7Z402 723 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 PACS2Q86VP3 889 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 ARFGAP1Q8N6T3 406 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 CENPIQ92674 756 aaPredicted RBP12.13□□□□□ -0.47
VRK3-223ENST00000601341 CCDC77Q9BR77 488 aa12.13□□□□□ -0.47
VRK3-223ENST00000601341 CRISPLD1Q9H336 500 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms