RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 LEXMQ3ZCV2 418 aa14.93□□□□□ -0.02
UPF1-211ENST00000600868 RAB6CQ53S08 254 aa14.93□□□□□ -0.02
UPF1-211ENST00000600868 BRMS1LQ5PSV4 323 aa14.93□□□□□ -0.02
UPF1-211ENST00000600868 CC2D1AQ6P1N0 951 aaPredicted RBP14.93□□□□□ -0.02
UPF1-211ENST00000600868 ZSCAN30Q86W11 494 aa14.93□□□□□ -0.02
UPF1-211ENST00000600868 C17orf53Q8N3J3 647 aaPredicted RBP14.93□□□□□ -0.02
UPF1-211ENST00000600868 TRIM58Q8NG06 486 aa14.93□□□□□ -0.02
UPF1-211ENST00000600868 PLD4Q96BZ4 506 aa14.93□□□□□ -0.02
UPF1-211ENST00000600868 IRX2Q9BZI1 471 aaPredicted RBP14.93□□□□□ -0.02
UPF1-211ENST00000600868 RAB6CQ9H0N0 254 aa14.93□□□□□ -0.02
UPF1-211ENST00000600868 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.93□□□□□ -0.02
UPF1-211ENST00000600868 USTQ9Y2C2 406 aa14.93□□□□□ -0.02
UPF1-211ENST00000600868 CPQQ9Y646 472 aa14.93□□□□□ -0.02
UPF1-211ENST00000600868 SYNJ2BP-COX16A0A087WUM0 186 aa14.92□□□□□ -0.02
UPF1-211ENST00000600868 KIF5CO60282 957 aa14.92□□□□□ -0.02
UPF1-211ENST00000600868 TCF3P15923 654 aa14.92□□□□□ -0.02
UPF1-211ENST00000600868 MIPP30301 263 aa14.92□□□□□ -0.02
UPF1-211ENST00000600868 ATXN1P54253 815 aaKnown RBP14.92□□□□□ -0.02
UPF1-211ENST00000600868 AIF1P55008 147 aa14.92□□□□□ -0.02
UPF1-211ENST00000600868 MTA1Q13330 715 aa14.92□□□□□ -0.02
UPF1-211ENST00000600868 PUS10Q3MIT2 529 aaKnown RBP14.92□□□□□ -0.02
UPF1-211ENST00000600868 DDX42Q86XP3 938 aaKnown RBP eCLIP14.92□□□□□ -0.02
UPF1-211ENST00000600868 ARID3BQ8IVW6 561 aaPredicted RBP14.92□□□□□ -0.02
UPF1-211ENST00000600868 UNC45BQ8IWX7 931 aa14.92□□□□□ -0.02
UPF1-211ENST00000600868 ZSCAN18Q8TBC5 510 aaPredicted RBP14.92□□□□□ -0.02
UPF1-211ENST00000600868 USP13Q92995 863 aaPredicted RBP14.92□□□□□ -0.02
UPF1-211ENST00000600868 NTAN1Q96AB6 310 aa14.92□□□□□ -0.02
UPF1-211ENST00000600868 FCRL2Q96LA5 508 aaPredicted RBP14.92□□□□□ -0.02
UPF1-211ENST00000600868 ASB16Q96NS5 453 aa14.92□□□□□ -0.02
UPF1-211ENST00000600868 MYADMQ96S97 322 aa14.92□□□□□ -0.02
UPF1-211ENST00000600868 GOLPH3Q9H4A6 298 aa14.92□□□□□ -0.02
UPF1-211ENST00000600868 WDCPQ9H6R7 721 aa14.92□□□□□ -0.02
UPF1-211ENST00000600868 KIF9Q9HAQ2 790 aa14.92□□□□□ -0.02
UPF1-211ENST00000600868 TRPV4Q9HBA0 871 aa14.92□□□□□ -0.02
UPF1-211ENST00000600868 GKN1Q9NS71 199 aa14.92□□□□□ -0.02
UPF1-211ENST00000600868 TDP1Q9NUW8 608 aa14.92□□□□□ -0.02
UPF1-211ENST00000600868 SMPD4Q9NXE4 827 aa14.92□□□□□ -0.02
UPF1-211ENST00000600868 ARHGEF38Q9NXL2 777 aa14.92□□□□□ -0.02
UPF1-211ENST00000600868 COX16Q9P0S2 106 aa14.92□□□□□ -0.02
UPF1-211ENST00000600868 USP18Q9UMW8 372 aa14.92□□□□□ -0.02
UPF1-211ENST00000600868 NUP210Q8TEM1 1887 aaPredicted RBP14.91□□□□□ -0.02
UPF1-211ENST00000600868 KCNU1A8MYU2 1149 aa14.91□□□□□ -0.02
UPF1-211ENST00000600868 SPOPO43791 374 aa14.91□□□□□ -0.02
UPF1-211ENST00000600868 PRPSAP2O60256 369 aa14.91□□□□□ -0.02
UPF1-211ENST00000600868 STC2O76061 302 aa14.91□□□□□ -0.02
UPF1-211ENST00000600868 MSNP26038 577 aaKnown RBP14.91□□□□□ -0.02
UPF1-211ENST00000600868 KCNQ1P51787 676 aa14.91□□□□□ -0.02
UPF1-211ENST00000600868 ZXDBP98169 803 aa14.91□□□□□ -0.02
UPF1-211ENST00000600868 SLC25A11Q02978 314 aaKnown RBP14.91□□□□□ -0.02
UPF1-211ENST00000600868 HADHQ16836 314 aaKnown RBP14.91□□□□□ -0.02
UPF1-211ENST00000600868 BOLA3Q53S33 107 aa14.91□□□□□ -0.02
UPF1-211ENST00000600868 ZC3H12AQ5D1E8 599 aaKnown RBP14.91□□□□□ -0.02
UPF1-211ENST00000600868 FAM78AQ5JUQ0 283 aa14.91□□□□□ -0.02
UPF1-211ENST00000600868 LRRC38Q5VT99 294 aa14.91□□□□□ -0.02
UPF1-211ENST00000600868 DAB2IPQ5VWQ8 1189 aa14.91□□□□□ -0.02
UPF1-211ENST00000600868 NUGGCQ68CJ6 796 aa14.91□□□□□ -0.02
UPF1-211ENST00000600868 SCYL2Q6P3W7 929 aa14.91□□□□□ -0.02
UPF1-211ENST00000600868 OTOP3Q7RTS5 596 aa14.91□□□□□ -0.02
UPF1-211ENST00000600868 NT5DC3Q86UY8 548 aa14.91□□□□□ -0.02
UPF1-211ENST00000600868 FAM131BQ86XD5 332 aa14.91□□□□□ -0.02
UPF1-211ENST00000600868 CPNE8Q86YQ8 564 aa14.91□□□□□ -0.02
UPF1-211ENST00000600868 KIAA1958Q8N8K9 716 aa14.91□□□□□ -0.02
UPF1-211ENST00000600868 ADAMTS19Q8TE59 1207 aa14.91□□□□□ -0.02
UPF1-211ENST00000600868 SMARCD2Q92925 531 aa14.91□□□□□ -0.02
UPF1-211ENST00000600868 CD101Q93033 1021 aa14.91□□□□□ -0.02
UPF1-211ENST00000600868 RNF34Q969K3 372 aa14.91□□□□□ -0.02
UPF1-211ENST00000600868 AZIN2Q96A70 460 aa14.91□□□□□ -0.02
UPF1-211ENST00000600868 AMFRQ9UKV5 643 aa14.91□□□□□ -0.02
UPF1-211ENST00000600868 HELZP42694 1942 aaKnown RBP14.91□□□□□ -0.02
UPF1-211ENST00000600868 LEFTY2O00292 366 aa14.9□□□□□ -0.02
UPF1-211ENST00000600868 GREM1O60565 184 aa14.9□□□□□ -0.02
UPF1-211ENST00000600868 PRAMEF12O95522 483 aa14.9□□□□□ -0.02
UPF1-211ENST00000600868 APOEP02649 317 aa14.9□□□□□ -0.02
UPF1-211ENST00000600868 LAMP2P13473 410 aa14.9□□□□□ -0.02
UPF1-211ENST00000600868 TCF4P15884 667 aa14.9□□□□□ -0.02
UPF1-211ENST00000600868 IL1R2P27930 398 aa14.9□□□□□ -0.02
UPF1-211ENST00000600868 GBP2P32456 591 aaPredicted RBP14.9□□□□□ -0.02
UPF1-211ENST00000600868 ADRA1BP35368 520 aa14.9□□□□□ -0.02
UPF1-211ENST00000600868 SSR1P43307 286 aaKnown RBP14.9□□□□□ -0.02
UPF1-211ENST00000600868 HARS2P49590 506 aaKnown RBP14.9□□□□□ -0.02
UPF1-211ENST00000600868 TAS2R40P59535 323 aa14.9□□□□□ -0.02
UPF1-211ENST00000600868 SCAPQ12770 1279 aa14.9□□□□□ -0.02
UPF1-211ENST00000600868 SMAD2Q15796 467 aaKnown RBP14.9□□□□□ -0.02
UPF1-211ENST00000600868 ARL13BQ3SXY8 428 aa14.9□□□□□ -0.02
UPF1-211ENST00000600868 ZNF569Q5MCW4 686 aa14.9□□□□□ -0.02
UPF1-211ENST00000600868 ERMARDQ5T6L9 678 aa14.9□□□□□ -0.02
UPF1-211ENST00000600868 CYP4V2Q6ZWL3 525 aaPredicted RBP14.9□□□□□ -0.02
UPF1-211ENST00000600868 PEX26Q7Z412 305 aa14.9□□□□□ -0.02
UPF1-211ENST00000600868 POLNQ7Z5Q5 900 aa14.9□□□□□ -0.02
UPF1-211ENST00000600868 PSTKQ8IV42 348 aaKnown RBP14.9□□□□□ -0.02
UPF1-211ENST00000600868 RHOT1Q8IXI2 618 aa14.9□□□□□ -0.02
UPF1-211ENST00000600868 CELF5Q8N6W0 485 aaKnown RBP14.9□□□□□ -0.02
UPF1-211ENST00000600868 CCDC185Q8N715 623 aa14.9□□□□□ -0.02
UPF1-211ENST00000600868 SH3RF2Q8TEC5 729 aa14.9□□□□□ -0.02
UPF1-211ENST00000600868 TEKT4Q8WW24 435 aa14.9□□□□□ -0.02
UPF1-211ENST00000600868 E2F7Q96AV8 911 aa14.9□□□□□ -0.02
UPF1-211ENST00000600868 HAPLN3Q96S86 360 aa14.9□□□□□ -0.02
UPF1-211ENST00000600868 PEBP4Q96S96 227 aa14.9□□□□□ -0.02
UPF1-211ENST00000600868 DCLK3Q9C098 648 aa14.9□□□□□ -0.02
UPF1-211ENST00000600868 TKTL2Q9H0I9 626 aa14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms