RNA–Protein interactions for RNA: ENST00000600523.5

SRRM1-223, Transcript of serine and arginine repetitive matrix 1, human

TSL 5

Gene SRRM1, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SRRM1-223	ENST00000600523	MSI1	O43347	362 aa	Known RBP	13.54	□□□□□ -0.24
SRRM1-223	ENST00000600523	KRT3	P12035	628 aa		13.54	□□□□□ -0.24
SRRM1-223	ENST00000600523	SKIL	P12757	684 aa		13.54	□□□□□ -0.24
SRRM1-223	ENST00000600523	ABCB4	P21439	1286 aa		13.54	□□□□□ -0.24
SRRM1-223	ENST00000600523	DRD1	P21728	446 aa		13.54	□□□□□ -0.24
SRRM1-223	ENST00000600523	CD72	P21854	359 aa		13.54	□□□□□ -0.24
SRRM1-223	ENST00000600523	KCNA4	P22459	653 aa		13.54	□□□□□ -0.24
SRRM1-223	ENST00000600523	EIF2D	P41214	584 aa	Known RBP	13.54	□□□□□ -0.24
SRRM1-223	ENST00000600523	SOX9	P48436	509 aa		13.54	□□□□□ -0.24
SRRM1-223	ENST00000600523	NUBP1	P53384	320 aa		13.54	□□□□□ -0.24
SRRM1-223	ENST00000600523	TAF5	Q15542	800 aa		13.54	□□□□□ -0.24
SRRM1-223	ENST00000600523	LY6G5C	Q5SRR4	150 aa		13.54	□□□□□ -0.24
SRRM1-223	ENST00000600523	ADGRF1	Q5T601	910 aa		13.54	□□□□□ -0.24
SRRM1-223	ENST00000600523	SYPL2	Q5VXT5	272 aa		13.54	□□□□□ -0.24
SRRM1-223	ENST00000600523	DNAJC24	Q6P3W2	148 aa		13.54	□□□□□ -0.24
SRRM1-223	ENST00000600523	ARC	Q7LC44	396 aa		13.54	□□□□□ -0.24
SRRM1-223	ENST00000600523	TMC6	Q7Z403	805 aa		13.54	□□□□□ -0.24
SRRM1-223	ENST00000600523	TAC4	Q86UU9	113 aa		13.54	□□□□□ -0.24
SRRM1-223	ENST00000600523	CPXM2	Q8N436	756 aa		13.54	□□□□□ -0.24
SRRM1-223	ENST00000600523	ATP6V0D2	Q8N8Y2	350 aa		13.54	□□□□□ -0.24
SRRM1-223	ENST00000600523	ZNF557	Q8N988	423 aa	Predicted RBP	13.54	□□□□□ -0.24
SRRM1-223	ENST00000600523	CD101	Q93033	1021 aa		13.54	□□□□□ -0.24
SRRM1-223	ENST00000600523	AZIN2	Q96A70	460 aa		13.54	□□□□□ -0.24
SRRM1-223	ENST00000600523	PCDHB18P	Q96TA0	734 aa		13.54	□□□□□ -0.24
SRRM1-223	ENST00000600523	IRX2	Q9BZI1	471 aa	Predicted RBP	13.54	□□□□□ -0.24
SRRM1-223	ENST00000600523	FOXQ1	Q9C009	403 aa		13.54	□□□□□ -0.24
SRRM1-223	ENST00000600523	C11orf16	Q9NQ32	467 aa		13.54	□□□□□ -0.24
SRRM1-223	ENST00000600523	TICRR	Q7Z2Z1	1910 aa		13.53	□□□□□ -0.24
SRRM1-223	ENST00000600523	SYNJ2BP-COX16	A0A087WUM0	186 aa		13.53	□□□□□ -0.24
SRRM1-223	ENST00000600523	TMCO5B	A8MYB1	307 aa		13.53	□□□□□ -0.24
SRRM1-223	ENST00000600523	NEDD8-MDP1	E9PL57	170 aa		13.53	□□□□□ -0.24
SRRM1-223	ENST00000600523		M0QYT0	321 aa		13.53	□□□□□ -0.24
SRRM1-223	ENST00000600523	TRDMT1	O14717	391 aa	Known RBP	13.53	□□□□□ -0.24
SRRM1-223	ENST00000600523	IRAK2	O43187	625 aa		13.53	□□□□□ -0.24
SRRM1-223	ENST00000600523	HOXC11	O43248	304 aa	Predicted RBP	13.53	□□□□□ -0.24
SRRM1-223	ENST00000600523	RTN2	O75298	545 aa		13.53	□□□□□ -0.24
SRRM1-223	ENST00000600523	PDGFB	P01127	241 aa	Predicted RBP	13.53	□□□□□ -0.24
SRRM1-223	ENST00000600523	FYN	P06241	537 aa		13.53	□□□□□ -0.24
SRRM1-223	ENST00000600523	MYBL1	P10243	752 aa		13.53	□□□□□ -0.24
SRRM1-223	ENST00000600523	AVPR2	P30518	371 aa		13.53	□□□□□ -0.24
SRRM1-223	ENST00000600523	SDC4	P31431	198 aa		13.53	□□□□□ -0.24
SRRM1-223	ENST00000600523	SULT1E1	P49888	294 aa		13.53	□□□□□ -0.24
SRRM1-223	ENST00000600523	NME3	Q13232	169 aa		13.53	□□□□□ -0.24
SRRM1-223	ENST00000600523	PPP2R5D	Q14738	602 aa		13.53	□□□□□ -0.24
SRRM1-223	ENST00000600523	PON2	Q15165	354 aa		13.53	□□□□□ -0.24
SRRM1-223	ENST00000600523	E2F5	Q15329	346 aa		13.53	□□□□□ -0.24
SRRM1-223	ENST00000600523	SLC25A52	Q3SY17	297 aa		13.53	□□□□□ -0.24
SRRM1-223	ENST00000600523	FBXO43	Q4G163	708 aa		13.53	□□□□□ -0.24
SRRM1-223	ENST00000600523	MPPE1	Q53F39	396 aa		13.53	□□□□□ -0.24
SRRM1-223	ENST00000600523	ACBD5	Q5T8D3	534 aa	Predicted RBP	13.53	□□□□□ -0.24
SRRM1-223	ENST00000600523	DCUN1D2	Q6PH85	259 aa		13.53	□□□□□ -0.24
SRRM1-223	ENST00000600523	RHBDF2	Q6PJF5	856 aa		13.53	□□□□□ -0.24
SRRM1-223	ENST00000600523		Q6ZNB5	142 aa		13.53	□□□□□ -0.24
SRRM1-223	ENST00000600523	TPGS1	Q6ZTW0	290 aa		13.53	□□□□□ -0.24
SRRM1-223	ENST00000600523	ZNF571	Q7Z3V5	609 aa	Predicted RBP	13.53	□□□□□ -0.24
SRRM1-223	ENST00000600523	SYNPO	Q8N3V7	929 aa		13.53	□□□□□ -0.24
SRRM1-223	ENST00000600523	C3orf20	Q8ND61	904 aa		13.53	□□□□□ -0.24
SRRM1-223	ENST00000600523	ADAM32	Q8TC27	787 aa		13.53	□□□□□ -0.24
SRRM1-223	ENST00000600523	DDI1	Q8WTU0	396 aa		13.53	□□□□□ -0.24
SRRM1-223	ENST00000600523	MRFAP1L1	Q96HT8	127 aa		13.53	□□□□□ -0.24
SRRM1-223	ENST00000600523	BTN2A3P	Q96KV6	586 aa		13.53	□□□□□ -0.24
SRRM1-223	ENST00000600523	PNKP	Q96T60	521 aa		13.53	□□□□□ -0.24
SRRM1-223	ENST00000600523	IER2	Q9BTL4	223 aa		13.53	□□□□□ -0.24
SRRM1-223	ENST00000600523	METTL5	Q9NRN9	209 aa	Known RBP	13.53	□□□□□ -0.24
SRRM1-223	ENST00000600523	PARVA	Q9NVD7	372 aa		13.53	□□□□□ -0.24
SRRM1-223	ENST00000600523	COX16	Q9P0S2	106 aa		13.53	□□□□□ -0.24
SRRM1-223	ENST00000600523	DEC1	Q9P2X7	70 aa		13.53	□□□□□ -0.24
SRRM1-223	ENST00000600523	AGO1	Q9UL18	857 aa	Known RBP	13.53	□□□□□ -0.24
SRRM1-223	ENST00000600523	HCN4	Q9Y3Q4	1203 aa		13.53	□□□□□ -0.24
SRRM1-223	ENST00000600523	FAM170A	A1A519	330 aa		13.52	□□□□□ -0.25
SRRM1-223	ENST00000600523	AKR1B15	C9JRZ8	316 aa	Predicted RBP	13.52	□□□□□ -0.25
SRRM1-223	ENST00000600523	ATG13	O75143	517 aa		13.52	□□□□□ -0.25
SRRM1-223	ENST00000600523	MOCS2	O96007	188 aa	Predicted RBP	13.52	□□□□□ -0.25
SRRM1-223	ENST00000600523	IGLV3-27	P01718	113 aa		13.52	□□□□□ -0.25
SRRM1-223	ENST00000600523	FTL	P02792	175 aa	Predicted RBP	13.52	□□□□□ -0.25
SRRM1-223	ENST00000600523	KLKB1	P03952	638 aa		13.52	□□□□□ -0.25
SRRM1-223	ENST00000600523	APOD	P05090	189 aa		13.52	□□□□□ -0.25
SRRM1-223	ENST00000600523	TYR	P14679	529 aa		13.52	□□□□□ -0.25
SRRM1-223	ENST00000600523	PDGFRA	P16234	1089 aa		13.52	□□□□□ -0.25
SRRM1-223	ENST00000600523	TARS	P26639	723 aa	Known RBP	13.52	□□□□□ -0.25
SRRM1-223	ENST00000600523	ZNF75D	P51815	510 aa		13.52	□□□□□ -0.25
SRRM1-223	ENST00000600523	GSC	P56915	257 aa	Predicted RBP	13.52	□□□□□ -0.25
SRRM1-223	ENST00000600523	DEUP1	Q05D60	604 aa		13.52	□□□□□ -0.25
SRRM1-223	ENST00000600523	C2CD6	Q53TS8	623 aa		13.52	□□□□□ -0.25
SRRM1-223	ENST00000600523	CWF19L1	Q69YN2	538 aa	Known RBP	13.52	□□□□□ -0.25
SRRM1-223	ENST00000600523	MON1B	Q7L1V2	547 aa		13.52	□□□□□ -0.25
SRRM1-223	ENST00000600523	TMEM25	Q86YD3	366 aa		13.52	□□□□□ -0.25
SRRM1-223	ENST00000600523	TMA16	Q96EY4	203 aa	Known RBP	13.52	□□□□□ -0.25
SRRM1-223	ENST00000600523	PIWIL1	Q96J94	861 aa	Known RBP	13.52	□□□□□ -0.25
SRRM1-223	ENST00000600523	WDCP	Q9H6R7	721 aa		13.52	□□□□□ -0.25
SRRM1-223	ENST00000600523	LMAN1L	Q9HAT1	526 aa		13.52	□□□□□ -0.25
SRRM1-223	ENST00000600523	MRPL47	Q9HD33	250 aa	Known RBP	13.52	□□□□□ -0.25
SRRM1-223	ENST00000600523	ABHD10	Q9NUJ1	306 aa		13.52	□□□□□ -0.25
SRRM1-223	ENST00000600523	MARK1	Q9P0L2	795 aa		13.52	□□□□□ -0.25
SRRM1-223	ENST00000600523	ADAMTS1	Q9UHI8	967 aa		13.52	□□□□□ -0.25
SRRM1-223	ENST00000600523	SCIN	Q9Y6U3	715 aa		13.52	□□□□□ -0.25
SRRM1-223	ENST00000600523	TECTA	O75443	2155 aa		13.51	□□□□□ -0.25
SRRM1-223	ENST00000600523	OTOL1	A6NHN0	477 aa	Predicted RBP	13.51	□□□□□ -0.25
SRRM1-223	ENST00000600523	SIGLEC16	A6NMB1	481 aa		13.51	□□□□□ -0.25
SRRM1-223	ENST00000600523	AKR1B10	O60218	316 aa		13.51	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms