RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 C2orf42Q9NWW7 574 aa15.85■□□□□ 0.13
LIG1-219ENST00000600055 MYO6Q9UM54 1294 aa15.85■□□□□ 0.13
LIG1-219ENST00000600055 GOLGA6L7A0A1B0GV03 622 aa15.84■□□□□ 0.13
LIG1-219ENST00000600055 GOLGA8SH3BPF8 625 aa15.84■□□□□ 0.13
LIG1-219ENST00000600055 TSPAN3O60637 253 aa15.84■□□□□ 0.13
LIG1-219ENST00000600055 RNF40O75150 1001 aa15.84■□□□□ 0.13
LIG1-219ENST00000600055 TULP3O75386 442 aa15.84■□□□□ 0.13
LIG1-219ENST00000600055 DAB1O75553 588 aa15.84■□□□□ 0.13
LIG1-219ENST00000600055 TRUB2O95900 331 aaKnown RBP15.84■□□□□ 0.13
LIG1-219ENST00000600055 IGLV3-25P01717 112 aa15.84■□□□□ 0.13
LIG1-219ENST00000600055 ASIC2Q16515 512 aa15.84■□□□□ 0.13
LIG1-219ENST00000600055 CLEC16AQ2KHT3 1053 aa15.84■□□□□ 0.13
LIG1-219ENST00000600055 SFMBT2Q5VUG0 894 aa15.84■□□□□ 0.13
LIG1-219ENST00000600055 TRIM72Q6ZMU5 477 aa15.84■□□□□ 0.13
LIG1-219ENST00000600055 ZDHHC17Q8IUH5 632 aa15.84■□□□□ 0.13
LIG1-219ENST00000600055 FAM217AQ8IXS0 508 aa15.84■□□□□ 0.13
LIG1-219ENST00000600055 PHTF2Q8N3S3 785 aa15.84■□□□□ 0.13
LIG1-219ENST00000600055 ZNF397Q8NF99 534 aaPredicted RBP15.84■□□□□ 0.13
LIG1-219ENST00000600055 OLIG1Q8TAK6 271 aa15.84■□□□□ 0.13
LIG1-219ENST00000600055 SLC39A13Q96H72 371 aa15.84■□□□□ 0.13
LIG1-219ENST00000600055 SERPINB11Q96P15 392 aa15.84■□□□□ 0.13
LIG1-219ENST00000600055 PNKPQ96T60 521 aa15.84■□□□□ 0.13
LIG1-219ENST00000600055 C11orf70Q9BRQ4 267 aa15.84■□□□□ 0.13
LIG1-219ENST00000600055 ADAM33Q9BZ11 813 aa15.84■□□□□ 0.13
LIG1-219ENST00000600055 MARK1Q9P0L2 795 aa15.84■□□□□ 0.13
LIG1-219ENST00000600055 MIA3Q5JRA6 1907 aa15.84■□□□□ 0.13
LIG1-219ENST00000600055 WDFY4Q6ZS81 3184 aa15.83■□□□□ 0.13
LIG1-219ENST00000600055 SYNJ2BP-COX16A0A087WUM0 186 aa15.83■□□□□ 0.12
LIG1-219ENST00000600055 K7EQS6 105 aa15.83■□□□□ 0.12
LIG1-219ENST00000600055 IRAK2O43187 625 aa15.83■□□□□ 0.12
LIG1-219ENST00000600055 LAMTOR5O43504 91 aa15.83■□□□□ 0.12
LIG1-219ENST00000600055 CCDC172P0C7W6 258 aa15.83■□□□□ 0.12
LIG1-219ENST00000600055 MMP8P22894 467 aa15.83■□□□□ 0.12
LIG1-219ENST00000600055 HOXC13P31276 330 aa15.83■□□□□ 0.12
LIG1-219ENST00000600055 CHKAP35790 457 aa15.83■□□□□ 0.12
LIG1-219ENST00000600055 EIF2DP41214 584 aaKnown RBP15.83■□□□□ 0.12
LIG1-219ENST00000600055 PTPN5P54829 565 aa15.83■□□□□ 0.12
LIG1-219ENST00000600055 SEC13P55735 322 aa15.83■□□□□ 0.12
LIG1-219ENST00000600055 CDK17Q00537 523 aa15.83■□□□□ 0.12
LIG1-219ENST00000600055 RING1Q06587 406 aa15.83■□□□□ 0.12
LIG1-219ENST00000600055 PTP4A2Q12974 167 aa15.83■□□□□ 0.12
LIG1-219ENST00000600055 NNTQ13423 1086 aa15.83■□□□□ 0.12
LIG1-219ENST00000600055 ZC3H12AQ5D1E8 599 aaKnown RBP15.83■□□□□ 0.12
LIG1-219ENST00000600055 FIGNQ5HY92 759 aa15.83■□□□□ 0.12
LIG1-219ENST00000600055 FAM102AQ5T9C2 384 aaPredicted RBP15.83■□□□□ 0.12
LIG1-219ENST00000600055 FYB2Q5VWT5 728 aa15.83■□□□□ 0.12
LIG1-219ENST00000600055 NADSYN1Q6IA69 706 aa15.83■□□□□ 0.12
LIG1-219ENST00000600055 TSSK4Q6SA08 328 aa15.83■□□□□ 0.12
LIG1-219ENST00000600055 CPXM2Q8N436 756 aa15.83■□□□□ 0.12
LIG1-219ENST00000600055 MSANTD4Q8NCY6 345 aa15.83■□□□□ 0.12
LIG1-219ENST00000600055 CPLX3Q8WVH0 158 aa15.83■□□□□ 0.12
LIG1-219ENST00000600055 EXOC4Q96A65 974 aa15.83■□□□□ 0.12
LIG1-219ENST00000600055 SYT11Q9BT88 431 aa15.83■□□□□ 0.12
LIG1-219ENST00000600055 NUP58Q9BVL2 599 aa15.83■□□□□ 0.12
LIG1-219ENST00000600055 EDEM3Q9BZQ6 932 aa15.83■□□□□ 0.12
LIG1-219ENST00000600055 FAM204AQ9H8W3 233 aa15.83■□□□□ 0.12
LIG1-219ENST00000600055 ARHGEF4Q9NR80 690 aa15.83■□□□□ 0.12
LIG1-219ENST00000600055 FAM86C1Q9NVL1 165 aa15.83■□□□□ 0.12
LIG1-219ENST00000600055 DNAJC17Q9NVM6 304 aaKnown RBP15.83■□□□□ 0.12
LIG1-219ENST00000600055 POLR3BQ9NW08 1133 aaPredicted RBP15.83■□□□□ 0.12
LIG1-219ENST00000600055 AIPL1Q9NZN9 384 aa15.83■□□□□ 0.12
LIG1-219ENST00000600055 COX16Q9P0S2 106 aa15.83■□□□□ 0.12
LIG1-219ENST00000600055 CALCOCO1Q9P1Z2 691 aa15.83■□□□□ 0.12
LIG1-219ENST00000600055 WDR35Q9P2L0 1181 aa15.83■□□□□ 0.12
LIG1-219ENST00000600055 XPO7Q9UIA9 1087 aaKnown RBP15.83■□□□□ 0.12
LIG1-219ENST00000600055 TLR6Q9Y2C9 796 aa15.83■□□□□ 0.12
LIG1-219ENST00000600055 CACNG3O60359 315 aa15.82■□□□□ 0.12
LIG1-219ENST00000600055 ACSL4O60488 711 aa15.82■□□□□ 0.12
LIG1-219ENST00000600055 KAT7O95251 611 aa15.82■□□□□ 0.12
LIG1-219ENST00000600055 GJB6O95452 261 aa15.82■□□□□ 0.12
LIG1-219ENST00000600055 MOCS2O96007 188 aaPredicted RBP15.82■□□□□ 0.12
LIG1-219ENST00000600055 PENKP01210 267 aaPredicted RBP15.82■□□□□ 0.12
LIG1-219ENST00000600055 SKILP12757 684 aa15.82■□□□□ 0.12
LIG1-219ENST00000600055 TFE3P19532 575 aaPredicted RBP15.82■□□□□ 0.12
LIG1-219ENST00000600055 TNFAIP3P21580 790 aa15.82■□□□□ 0.12
LIG1-219ENST00000600055 SLC6A4P31645 630 aa15.82■□□□□ 0.12
LIG1-219ENST00000600055 NOS2P35228 1153 aa15.82■□□□□ 0.12
LIG1-219ENST00000600055 NSFP46459 744 aaKnown RBP15.82■□□□□ 0.12
LIG1-219ENST00000600055 SGSHP51688 502 aa15.82■□□□□ 0.12
LIG1-219ENST00000600055 SATB1Q01826 763 aa15.82■□□□□ 0.12
LIG1-219ENST00000600055 CENPCQ03188 943 aa15.82■□□□□ 0.12
LIG1-219ENST00000600055 CSTF1Q05048 431 aaKnown RBP15.82■□□□□ 0.12
LIG1-219ENST00000600055 EIF4EBP2Q13542 120 aaPredicted RBP15.82■□□□□ 0.12
LIG1-219ENST00000600055 EMC10Q5UCC4 262 aa15.82■□□□□ 0.12
LIG1-219ENST00000600055 OTUD1Q5VV17 481 aaPredicted RBP15.82■□□□□ 0.12
LIG1-219ENST00000600055 NUGGCQ68CJ6 796 aa15.82■□□□□ 0.12
LIG1-219ENST00000600055 TRNP1Q6NT89 227 aa15.82■□□□□ 0.12
LIG1-219ENST00000600055 RFWD3Q6PCD5 774 aa15.82■□□□□ 0.12
LIG1-219ENST00000600055 UNC45BQ8IWX7 931 aa15.82■□□□□ 0.12
LIG1-219ENST00000600055 SYNPOQ8N3V7 929 aa15.82■□□□□ 0.12
LIG1-219ENST00000600055 SPEM1Q8N4L4 309 aa15.82■□□□□ 0.12
LIG1-219ENST00000600055 XPO6Q96QU8 1125 aaKnown RBP15.82■□□□□ 0.12
LIG1-219ENST00000600055 ANP32EQ9BTT0 268 aa15.82■□□□□ 0.12
LIG1-219ENST00000600055 HAUS4Q9H6D7 363 aa15.82■□□□□ 0.12
LIG1-219ENST00000600055 METTL5Q9NRN9 209 aaKnown RBP15.82■□□□□ 0.12
LIG1-219ENST00000600055 DDIT4Q9NX09 232 aa15.82■□□□□ 0.12
LIG1-219ENST00000600055 TAS2R14Q9NYV8 317 aa15.82■□□□□ 0.12
LIG1-219ENST00000600055 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP15.82■□□□□ 0.12
LIG1-219ENST00000600055 DEC1Q9P2X7 70 aa15.82■□□□□ 0.12
LIG1-219ENST00000600055 STOML2Q9UJZ1 356 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms