RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 KBTBD13C9JR72 458 aa14.98□□□□□ -0.01
VRK3-217ENST00000599538 CAPN9O14815 690 aa14.98□□□□□ -0.01
VRK3-217ENST00000599538 CHADO15335 359 aa14.98□□□□□ -0.01
VRK3-217ENST00000599538 ODC1P11926 461 aa14.98□□□□□ -0.01
VRK3-217ENST00000599538 ARL4AP40617 200 aa14.98□□□□□ -0.01
VRK3-217ENST00000599538 GRIK3Q13003 919 aa14.98□□□□□ -0.01
VRK3-217ENST00000599538 FAM171BQ6P995 826 aa14.98□□□□□ -0.01
VRK3-217ENST00000599538 PALM2Q8IXS6 379 aa14.98□□□□□ -0.01
VRK3-217ENST00000599538 C4orf33Q8N1A6 199 aa14.98□□□□□ -0.01
VRK3-217ENST00000599538 RSPH1Q8WYR4 309 aa14.98□□□□□ -0.01
VRK3-217ENST00000599538 SMARCD1Q96GM5 515 aa14.98□□□□□ -0.01
VRK3-217ENST00000599538 OLFM3Q96PB7 478 aa14.98□□□□□ -0.01
VRK3-217ENST00000599538 QKIQ96PU8 341 aaKnown RBP eCLIP14.98□□□□□ -0.01
VRK3-217ENST00000599538 PHACTR1Q9C0D0 580 aa14.98□□□□□ -0.01
VRK3-217ENST00000599538 CCDC134Q9H6E4 229 aa14.98□□□□□ -0.01
VRK3-217ENST00000599538 CNGB3Q9NQW8 809 aa14.98□□□□□ -0.01
VRK3-217ENST00000599538 STAP1Q9ULZ2 295 aa14.98□□□□□ -0.01
VRK3-217ENST00000599538 SNX10Q9Y5X0 201 aa14.98□□□□□ -0.01
VRK3-217ENST00000599538 PTCH2Q9Y6C5 1203 aa14.98□□□□□ -0.01
VRK3-217ENST00000599538 DGKIO75912 1065 aa14.98□□□□□ -0.01
VRK3-217ENST00000599538 DDHD2O94830 711 aa14.98□□□□□ -0.01
VRK3-217ENST00000599538 PCSK1P29120 753 aa14.98□□□□□ -0.01
VRK3-217ENST00000599538 GRIA1P42261 906 aa14.98□□□□□ -0.01
VRK3-217ENST00000599538 INTS6LQ5JSJ4 861 aaKnown RBP14.98□□□□□ -0.01
VRK3-217ENST00000599538 C6orf89Q6UWU4 347 aa14.98□□□□□ -0.01
VRK3-217ENST00000599538 TAX1BP1Q86VP1 789 aa14.98□□□□□ -0.01
VRK3-217ENST00000599538 CDKL3Q8IVW4 592 aaPredicted RBP14.98□□□□□ -0.01
VRK3-217ENST00000599538 RIBC1Q8N443 379 aaPredicted RBP14.98□□□□□ -0.01
VRK3-217ENST00000599538 CEP41Q9BYV8 373 aa14.98□□□□□ -0.01
VRK3-217ENST00000599538 ACSS3Q9H6R3 686 aa14.98□□□□□ -0.01
VRK3-217ENST00000599538 PLAC1Q9HBJ0 212 aa14.98□□□□□ -0.01
VRK3-217ENST00000599538 CSNK1G1Q9HCP0 422 aa14.98□□□□□ -0.01
VRK3-217ENST00000599538 M0QZQ0 153 aa14.97□□□□□ -0.01
VRK3-217ENST00000599538 LTFP02788 710 aa14.97□□□□□ -0.01
VRK3-217ENST00000599538 CYP11A1P05108 521 aa14.97□□□□□ -0.01
VRK3-217ENST00000599538 RPLP2P05387 115 aaKnown RBP14.97□□□□□ -0.01
VRK3-217ENST00000599538 ZFXP17010 805 aaPredicted RBP14.97□□□□□ -0.01
VRK3-217ENST00000599538 KRT15P19012 456 aa14.97□□□□□ -0.01
VRK3-217ENST00000599538 ADRA1BP35368 520 aa14.97□□□□□ -0.01
VRK3-217ENST00000599538 WDR4P57081 412 aaKnown RBP14.97□□□□□ -0.01
VRK3-217ENST00000599538 GEMIN4P57678 1058 aaKnown RBP14.97□□□□□ -0.01
VRK3-217ENST00000599538 IFT88Q13099 833 aa14.97□□□□□ -0.01
VRK3-217ENST00000599538 XRCC4Q13426 336 aa14.97□□□□□ -0.01
VRK3-217ENST00000599538 ZNF534Q76KX8 674 aa14.97□□□□□ -0.01
VRK3-217ENST00000599538 SCAMP5Q8TAC9 235 aa14.97□□□□□ -0.01
VRK3-217ENST00000599538 PGBD4Q96DM1 585 aa14.97□□□□□ -0.01
VRK3-217ENST00000599538 PAFAH2Q99487 392 aa14.97□□□□□ -0.01
VRK3-217ENST00000599538 ACBD6Q9BR61 282 aa14.97□□□□□ -0.01
VRK3-217ENST00000599538 TCRBV9S1A1TA0A576 114 aa14.96□□□□□ -0.01
VRK3-217ENST00000599538 C9IYK1 514 aa14.96□□□□□ -0.01
VRK3-217ENST00000599538 SMAPO00193 183 aa14.96□□□□□ -0.01
VRK3-217ENST00000599538 GCATO75600 419 aa14.96□□□□□ -0.01
VRK3-217ENST00000599538 FBXO21O94952 628 aa14.96□□□□□ -0.01
VRK3-217ENST00000599538 VIMP08670 466 aaKnown RBP14.96□□□□□ -0.01
VRK3-217ENST00000599538 OR4Q2P0C623 313 aa14.96□□□□□ -0.01
VRK3-217ENST00000599538 NR2C2P49116 596 aa14.96□□□□□ -0.01
VRK3-217ENST00000599538 PGFP49763 221 aa14.96□□□□□ -0.01
VRK3-217ENST00000599538 CORO7P57737 925 aa14.96□□□□□ -0.01
VRK3-217ENST00000599538 DEFB115Q30KQ5 88 aa14.96□□□□□ -0.01
VRK3-217ENST00000599538 CLLU1OSQ5K130 101 aa14.96□□□□□ -0.01
VRK3-217ENST00000599538 LHX8Q68G74 356 aa14.96□□□□□ -0.01
VRK3-217ENST00000599538 PRPF39Q86UA1 669 aaKnown RBP14.96□□□□□ -0.01
VRK3-217ENST00000599538 DYDC1Q8WWB3 177 aa14.96□□□□□ -0.01
VRK3-217ENST00000599538 GLT1D1Q96MS3 346 aa14.96□□□□□ -0.01
VRK3-217ENST00000599538 DHRS4Q9BTZ2 278 aa14.96□□□□□ -0.01
VRK3-217ENST00000599538 TRABDQ9H4I3 376 aa14.96□□□□□ -0.01
VRK3-217ENST00000599538 DDIT4Q9NX09 232 aa14.96□□□□□ -0.01
VRK3-217ENST00000599538 TCP11X1B4DZS4 312 aa14.96□□□□□ -0.01
VRK3-217ENST00000599538 DPYSQ14117 519 aa14.96□□□□□ -0.01
VRK3-217ENST00000599538 SPRED3Q2MJR0 410 aa14.96□□□□□ -0.01
VRK3-217ENST00000599538 HEATR6Q6AI08 1181 aaKnown RBP14.96□□□□□ -0.01
VRK3-217ENST00000599538 OVOS1Q6IE37 1185 aa14.96□□□□□ -0.01
VRK3-217ENST00000599538 MPP5Q8N3R9 675 aa14.96□□□□□ -0.01
VRK3-217ENST00000599538 STKLD1Q8NE28 680 aa14.96□□□□□ -0.01
VRK3-217ENST00000599538 RAET1EQ8TD07 263 aa14.96□□□□□ -0.01
VRK3-217ENST00000599538 DCAKDQ8WVC6 231 aa14.96□□□□□ -0.01
VRK3-217ENST00000599538 HTR3CQ8WXA8 447 aa14.96□□□□□ -0.01
VRK3-217ENST00000599538 KLC2Q9H0B6 622 aa14.96□□□□□ -0.01
VRK3-217ENST00000599538 CREBZFQ9NS37 354 aa14.96□□□□□ -0.01
VRK3-217ENST00000599538 PSMC3IPQ9P2W1 217 aaPredicted RBP14.96□□□□□ -0.01
VRK3-217ENST00000599538 SLC24A2Q9UI40 661 aa14.96□□□□□ -0.01
VRK3-217ENST00000599538 ACTL7BQ9Y614 415 aa14.96□□□□□ -0.01
VRK3-217ENST00000599538 NUP205Q92621 2012 aa14.96□□□□□ -0.02
VRK3-217ENST00000599538 NLRC5Q86WI3 1866 aa14.95□□□□□ -0.02
VRK3-217ENST00000599538 FRMPD3Q5JV73 1810 aa14.95□□□□□ -0.02
VRK3-217ENST00000599538 EEF2KO00418 725 aaKnown RBP14.95□□□□□ -0.02
VRK3-217ENST00000599538 C1QAP02745 245 aa14.95□□□□□ -0.02
VRK3-217ENST00000599538 PHBP35232 272 aa14.95□□□□□ -0.02
VRK3-217ENST00000599538 MAGEA6P43360 314 aa14.95□□□□□ -0.02
VRK3-217ENST00000599538 YWHAGP61981 247 aaKnown RBP eCLIP14.95□□□□□ -0.02
VRK3-217ENST00000599538 IFRD2Q12894 506 aaPredicted RBP14.95□□□□□ -0.02
VRK3-217ENST00000599538 KBTBD12Q3ZCT8 623 aa14.95□□□□□ -0.02
VRK3-217ENST00000599538 ADGRD1Q6QNK2 874 aa14.95□□□□□ -0.02
VRK3-217ENST00000599538 DENND5BQ6ZUT9 1274 aa14.95□□□□□ -0.02
VRK3-217ENST00000599538 RFX8Q6ZV50 586 aa14.95□□□□□ -0.02
VRK3-217ENST00000599538 METTL23Q86XA0 190 aa14.95□□□□□ -0.02
VRK3-217ENST00000599538 PSTKQ8IV42 348 aaKnown RBP14.95□□□□□ -0.02
VRK3-217ENST00000599538 MZB1Q8WU39 189 aa14.95□□□□□ -0.02
VRK3-217ENST00000599538 TFB1MQ8WVM0 346 aaKnown RBP14.95□□□□□ -0.02
VRK3-217ENST00000599538 CKAP2Q8WWK9 683 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms