RNA–Protein interactions for RNA: ENST00000589753.1

ATG4D-211, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-211ENST00000589753 USTQ9Y2C2 406 aa15.8■□□□□ 0.12
ATG4D-211ENST00000589753 GOLGA6L9A6NEM1 432 aa15.79■□□□□ 0.12
ATG4D-211ENST00000589753 USP27XA6NNY8 438 aa15.79■□□□□ 0.12
ATG4D-211ENST00000589753 LEFTY2O00292 366 aa15.79■□□□□ 0.12
ATG4D-211ENST00000589753 PRAMEF12O95522 483 aa15.79■□□□□ 0.12
ATG4D-211ENST00000589753 IGLV3-27P01718 113 aa15.79■□□□□ 0.12
ATG4D-211ENST00000589753 IRF1P10914 325 aa15.79■□□□□ 0.12
ATG4D-211ENST00000589753 SLC2A3P11169 496 aa15.79■□□□□ 0.12
ATG4D-211ENST00000589753 LAMP2P13473 410 aa15.79■□□□□ 0.12
ATG4D-211ENST00000589753 CCR1P32246 355 aa15.79■□□□□ 0.12
ATG4D-211ENST00000589753 DEKP35659 375 aaKnown RBP15.79■□□□□ 0.12
ATG4D-211ENST00000589753 CXCR3P49682 368 aa15.79■□□□□ 0.12
ATG4D-211ENST00000589753 ATXN1P54253 815 aaKnown RBP15.79■□□□□ 0.12
ATG4D-211ENST00000589753 HDAC4P56524 1084 aa15.79■□□□□ 0.12
ATG4D-211ENST00000589753 ZXDBP98169 803 aa15.79■□□□□ 0.12
ATG4D-211ENST00000589753 RING1Q06587 406 aa15.79■□□□□ 0.12
ATG4D-211ENST00000589753 ZC3H12AQ5D1E8 599 aaKnown RBP15.79■□□□□ 0.12
ATG4D-211ENST00000589753 C11orf63Q6NUN7 778 aa15.79■□□□□ 0.12
ATG4D-211ENST00000589753 DAAM2Q86T65 1068 aa15.79■□□□□ 0.12
ATG4D-211ENST00000589753 CELF5Q8N6W0 485 aaKnown RBP15.79■□□□□ 0.12
ATG4D-211ENST00000589753 KIAA1524Q8TCG1 905 aa15.79■□□□□ 0.12
ATG4D-211ENST00000589753 SH3RF2Q8TEC5 729 aa15.79■□□□□ 0.12
ATG4D-211ENST00000589753 SLC39A13Q96H72 371 aa15.79■□□□□ 0.12
ATG4D-211ENST00000589753 FCRL2Q96LA5 508 aaPredicted RBP15.79■□□□□ 0.12
ATG4D-211ENST00000589753 PHF7Q9BWX1 381 aaPredicted RBP15.79■□□□□ 0.12
ATG4D-211ENST00000589753 WDCPQ9H6R7 721 aa15.79■□□□□ 0.12
ATG4D-211ENST00000589753 TRPV4Q9HBA0 871 aa15.79■□□□□ 0.12
ATG4D-211ENST00000589753 KCND1Q9NSA2 647 aa15.79■□□□□ 0.12
ATG4D-211ENST00000589753 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.79■□□□□ 0.12
ATG4D-211ENST00000589753 THEGQ9P2T0 379 aa15.79■□□□□ 0.12
ATG4D-211ENST00000589753 CCL26Q9Y258 94 aa15.79■□□□□ 0.12
ATG4D-211ENST00000589753 NUP210Q8TEM1 1887 aaPredicted RBP15.79■□□□□ 0.12
ATG4D-211ENST00000589753 GRID2IPA4D2P6 1211 aa15.78■□□□□ 0.12
ATG4D-211ENST00000589753 LRCH4O75427 683 aa15.78■□□□□ 0.12
ATG4D-211ENST00000589753 STC2O76061 302 aa15.78■□□□□ 0.12
ATG4D-211ENST00000589753 APOEP02649 317 aa15.78■□□□□ 0.12
ATG4D-211ENST00000589753 TCF3P15923 654 aa15.78■□□□□ 0.12
ATG4D-211ENST00000589753 SP100P23497 879 aaPredicted RBP15.78■□□□□ 0.12
ATG4D-211ENST00000589753 PCK1P35558 622 aa15.78■□□□□ 0.12
ATG4D-211ENST00000589753 SLC1A1P43005 524 aa15.78■□□□□ 0.12
ATG4D-211ENST00000589753 HARS2P49590 506 aaKnown RBP15.78■□□□□ 0.12
ATG4D-211ENST00000589753 KCNQ1P51787 676 aa15.78■□□□□ 0.12
ATG4D-211ENST00000589753 PPP2R5DQ14738 602 aa15.78■□□□□ 0.12
ATG4D-211ENST00000589753 AAK1Q2M2I8 961 aa15.78■□□□□ 0.12
ATG4D-211ENST00000589753 BRMS1LQ5PSV4 323 aa15.78■□□□□ 0.12
ATG4D-211ENST00000589753 DAB2IPQ5VWQ8 1189 aa15.78■□□□□ 0.12
ATG4D-211ENST00000589753 NUGGCQ68CJ6 796 aa15.78■□□□□ 0.12
ATG4D-211ENST00000589753 CC2D1AQ6P1N0 951 aaPredicted RBP15.78■□□□□ 0.12
ATG4D-211ENST00000589753 SCYL2Q6P3W7 929 aa15.78■□□□□ 0.12
ATG4D-211ENST00000589753 FAM131BQ86XD5 332 aa15.78■□□□□ 0.12
ATG4D-211ENST00000589753 UNC45BQ8IWX7 931 aa15.78■□□□□ 0.12
ATG4D-211ENST00000589753 ARFGAP1Q8N6T3 406 aa15.78■□□□□ 0.12
ATG4D-211ENST00000589753 TDRD5Q8NAT2 981 aaKnown RBP15.78■□□□□ 0.12
ATG4D-211ENST00000589753 TTC16Q8NEE8 873 aa15.78■□□□□ 0.12
ATG4D-211ENST00000589753 ADAMTS19Q8TE59 1207 aa15.78■□□□□ 0.12
ATG4D-211ENST00000589753 CFAP97Q9P2B7 532 aa15.78■□□□□ 0.12
ATG4D-211ENST00000589753 EPS15L1Q9UBC2 864 aa15.78■□□□□ 0.12
ATG4D-211ENST00000589753 LSM7Q9UK45 103 aaKnown RBP15.78■□□□□ 0.12
ATG4D-211ENST00000589753 ZKSCAN5Q9Y2L8 839 aa15.78■□□□□ 0.12
ATG4D-211ENST00000589753 SH3BP1Q9Y3L3 701 aa15.78■□□□□ 0.12
ATG4D-211ENST00000589753 NR2E1Q9Y466 385 aa15.78■□□□□ 0.12
ATG4D-211ENST00000589753 CAPN6Q9Y6Q1 641 aa15.78■□□□□ 0.12
ATG4D-211ENST00000589753 HELZP42694 1942 aaKnown RBP15.78■□□□□ 0.12
ATG4D-211ENST00000589753 PRPSAP2O60256 369 aa15.77■□□□□ 0.12
ATG4D-211ENST00000589753 PALMO75781 387 aa15.77■□□□□ 0.12
ATG4D-211ENST00000589753 COMTP21964 271 aa15.77■□□□□ 0.12
ATG4D-211ENST00000589753 FCARP24071 287 aa15.77■□□□□ 0.12
ATG4D-211ENST00000589753 MIPP30301 263 aa15.77■□□□□ 0.12
ATG4D-211ENST00000589753 VIPR2P41587 438 aa15.77■□□□□ 0.12
ATG4D-211ENST00000589753 SSR1P43307 286 aaKnown RBP15.77■□□□□ 0.12
ATG4D-211ENST00000589753 USP4Q13107 963 aa15.77■□□□□ 0.12
ATG4D-211ENST00000589753 ZNF77Q15935 545 aa15.77■□□□□ 0.12
ATG4D-211ENST00000589753 ARL13BQ3SXY8 428 aa15.77■□□□□ 0.12
ATG4D-211ENST00000589753 CPNE8Q86YQ8 564 aa15.77■□□□□ 0.12
ATG4D-211ENST00000589753 SYCE1Q8N0S2 351 aa15.77■□□□□ 0.12
ATG4D-211ENST00000589753 LRRC57Q8N9N7 239 aa15.77■□□□□ 0.12
ATG4D-211ENST00000589753 E2F7Q96AV8 911 aa15.77■□□□□ 0.12
ATG4D-211ENST00000589753 ALS2CR12Q96Q35 445 aa15.77■□□□□ 0.12
ATG4D-211ENST00000589753 DCLK3Q9C098 648 aa15.77■□□□□ 0.12
ATG4D-211ENST00000589753 TKTL2Q9H0I9 626 aa15.77■□□□□ 0.12
ATG4D-211ENST00000589753 GOLPH3Q9H4A6 298 aa15.77■□□□□ 0.12
ATG4D-211ENST00000589753 ZFP14Q9HCL3 533 aa15.77■□□□□ 0.12
ATG4D-211ENST00000589753 ARHGEF38Q9NXL2 777 aa15.77■□□□□ 0.12
ATG4D-211ENST00000589753 OBP2AQ9NY56 170 aa15.77■□□□□ 0.12
ATG4D-211ENST00000589753 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.77■□□□□ 0.12
ATG4D-211ENST00000589753 PCSK1NQ9UHG2 260 aa15.77■□□□□ 0.12
ATG4D-211ENST00000589753 SLC12A6Q9UHW9 1150 aa15.77■□□□□ 0.12
ATG4D-211ENST00000589753 USP18Q9UMW8 372 aa15.77■□□□□ 0.12
ATG4D-211ENST00000589753 ALG6Q9Y672 507 aa15.77■□□□□ 0.12
ATG4D-211ENST00000589753 E2F8A0AVK6 867 aa15.76■□□□□ 0.11
ATG4D-211ENST00000589753 KCNU1A8MYU2 1149 aa15.76■□□□□ 0.11
ATG4D-211ENST00000589753 C2CD4DB7Z1M9 353 aa15.76■□□□□ 0.11
ATG4D-211ENST00000589753 SPOPO43791 374 aa15.76■□□□□ 0.11
ATG4D-211ENST00000589753 MOCS2O96007 188 aaPredicted RBP15.76■□□□□ 0.11
ATG4D-211ENST00000589753 IL9P15248 144 aa15.76■□□□□ 0.11
ATG4D-211ENST00000589753 CORO1AP31146 461 aaKnown RBP15.76■□□□□ 0.11
ATG4D-211ENST00000589753 AIF1P55008 147 aa15.76■□□□□ 0.11
ATG4D-211ENST00000589753 MTA1Q13330 715 aa15.76■□□□□ 0.11
ATG4D-211ENST00000589753 HADHQ16836 314 aaKnown RBP15.76■□□□□ 0.11
ATG4D-211ENST00000589753 TANGO2Q6ICL3 276 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms