RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 NDST4Q9H3R1 872 aa12.92□□□□□ -0.34
SS18-225ENST00000585121 PARD6AQ9NPB6 346 aa12.92□□□□□ -0.34
SS18-225ENST00000585121 ZDHHC4Q9NPG8 344 aa12.92□□□□□ -0.34
SS18-225ENST00000585121 FBXO10Q9UK96 956 aa12.92□□□□□ -0.34
SS18-225ENST00000585121 CDV3Q9UKY7 258 aaKnown RBP12.92□□□□□ -0.34
SS18-225ENST00000585121 PCDHGA5Q9Y5G8 931 aa12.92□□□□□ -0.34
SS18-225ENST00000585121 MYOFQ9NZM1 2061 aa12.92□□□□□ -0.34
SS18-225ENST00000585121 ANTXRLA6NF34 631 aa12.91□□□□□ -0.34
SS18-225ENST00000585121 GFRA2O00451 464 aa12.91□□□□□ -0.34
SS18-225ENST00000585121 CAPN9O14815 690 aa12.91□□□□□ -0.34
SS18-225ENST00000585121 NPC1O15118 1278 aa12.91□□□□□ -0.34
SS18-225ENST00000585121 MAP3K13O43283 966 aa12.91□□□□□ -0.34
SS18-225ENST00000585121 ADAM23O75077 832 aa12.91□□□□□ -0.34
SS18-225ENST00000585121 EPN2O95208 641 aa12.91□□□□□ -0.34
SS18-225ENST00000585121 TPM2P07951 284 aa12.91□□□□□ -0.34
SS18-225ENST00000585121 CISD3P0C7P0 127 aa12.91□□□□□ -0.34
SS18-225ENST00000585121 NCAM1P13591 858 aa12.91□□□□□ -0.34
SS18-225ENST00000585121 HOXB2P14652 356 aa12.91□□□□□ -0.34
SS18-225ENST00000585121 WASP42768 502 aa12.91□□□□□ -0.34
SS18-225ENST00000585121 SLC11A2P49281 568 aa12.91□□□□□ -0.34
SS18-225ENST00000585121 SNX16P57768 344 aa12.91□□□□□ -0.34
SS18-225ENST00000585121 FOXK2Q01167 660 aa12.91□□□□□ -0.34
SS18-225ENST00000585121 FYB2Q5VWT5 728 aa12.91□□□□□ -0.34
SS18-225ENST00000585121 EGFLAMQ63HQ2 1017 aa12.91□□□□□ -0.34
SS18-225ENST00000585121 NUGGCQ68CJ6 796 aa12.91□□□□□ -0.34
SS18-225ENST00000585121 DENND1BQ6P3S1 775 aa12.91□□□□□ -0.34
SS18-225ENST00000585121 TOGARAM2Q6ZUX3 1019 aa12.91□□□□□ -0.34
SS18-225ENST00000585121 ERMP1Q7Z2K6 904 aa12.91□□□□□ -0.34
SS18-225ENST00000585121 SCUBE3Q8IX30 993 aa12.91□□□□□ -0.34
SS18-225ENST00000585121 C12orf50Q8NA57 414 aaPredicted RBP12.91□□□□□ -0.34
SS18-225ENST00000585121 MDGA1Q8NFP4 955 aa12.91□□□□□ -0.34
SS18-225ENST00000585121 RMDN1Q96DB5 314 aa12.91□□□□□ -0.34
SS18-225ENST00000585121 TMA16Q96EY4 203 aaKnown RBP12.91□□□□□ -0.34
SS18-225ENST00000585121 NOX5Q96PH1 765 aa12.91□□□□□ -0.34
SS18-225ENST00000585121 DDX50Q9BQ39 737 aaKnown RBP12.91□□□□□ -0.34
SS18-225ENST00000585121 DUSP15Q9H1R2 295 aaPredicted RBP12.91□□□□□ -0.34
SS18-225ENST00000585121 DNAJC12Q9UKB3 198 aa12.91□□□□□ -0.34
SS18-225ENST00000585121 INVSQ9Y283 1065 aa12.91□□□□□ -0.34
SS18-225ENST00000585121 SLC27A6Q9Y2P4 619 aa12.91□□□□□ -0.34
SS18-225ENST00000585121 SDK1Q7Z5N4 2213 aa12.91□□□□□ -0.34
SS18-225ENST00000585121 CEP250Q9BV73 2442 aa12.91□□□□□ -0.34
SS18-225ENST00000585121 KCNJ18B7U540 433 aa12.9□□□□□ -0.34
SS18-225ENST00000585121 PRRT4C9JH25 899 aa12.9□□□□□ -0.34
SS18-225ENST00000585121 DCLK1O15075 740 aa12.9□□□□□ -0.34
SS18-225ENST00000585121 MSI1O43347 362 aaKnown RBP12.9□□□□□ -0.34
SS18-225ENST00000585121 TSPAN3O60637 253 aa12.9□□□□□ -0.34
SS18-225ENST00000585121 GABBR2O75899 941 aa12.9□□□□□ -0.34
SS18-225ENST00000585121 TGM1P22735 817 aa12.9□□□□□ -0.34
SS18-225ENST00000585121 EEF1GP26641 437 aaKnown RBP12.9□□□□□ -0.34
SS18-225ENST00000585121 KRT9P35527 623 aa12.9□□□□□ -0.34
SS18-225ENST00000585121 RPL34P49207 117 aaKnown RBP12.9□□□□□ -0.34
SS18-225ENST00000585121 TBX4P57082 545 aa12.9□□□□□ -0.34
SS18-225ENST00000585121 BPIFB4P59827 614 aa12.9□□□□□ -0.34
SS18-225ENST00000585121 ARID5AQ03989 594 aa12.9□□□□□ -0.34
SS18-225ENST00000585121 KCNJ12Q14500 433 aa12.9□□□□□ -0.34
SS18-225ENST00000585121 HSP90AA4PQ58FG1 418 aa12.9□□□□□ -0.34
SS18-225ENST00000585121 ADGRF1Q5T601 910 aa12.9□□□□□ -0.34
SS18-225ENST00000585121 SASS6Q6UVJ0 657 aa12.9□□□□□ -0.34
SS18-225ENST00000585121 PRR23CQ6ZRP0 262 aa12.9□□□□□ -0.34
SS18-225ENST00000585121 DGLUCYQ7Z3D6 616 aa12.9□□□□□ -0.34
SS18-225ENST00000585121 ANKS1BQ7Z6G8 1248 aa12.9□□□□□ -0.34
SS18-225ENST00000585121 FAM217AQ8IXS0 508 aa12.9□□□□□ -0.34
SS18-225ENST00000585121 CLEC4CQ8WTT0 213 aa12.9□□□□□ -0.34
SS18-225ENST00000585121 SHC3Q92529 594 aa12.9□□□□□ -0.34
SS18-225ENST00000585121 SERPINB11Q96P15 392 aa12.9□□□□□ -0.34
SS18-225ENST00000585121 SLC4A5Q9BY07 1137 aa12.9□□□□□ -0.34
SS18-225ENST00000585121 CEP83Q9Y592 693 aa12.9□□□□□ -0.34
SS18-225ENST00000585121 TYW5A2RUC4 315 aaKnown RBP12.89□□□□□ -0.35
SS18-225ENST00000585121 TIMM44O43615 452 aa12.89□□□□□ -0.35
SS18-225ENST00000585121 CHRM1P11229 460 aaPredicted RBP12.89□□□□□ -0.35
SS18-225ENST00000585121 HNRNPLP14866 589 aaKnown RBP eCLIP12.89□□□□□ -0.353e-8■■■■□ 22.8
SS18-225ENST00000585121 RING1Q06587 406 aa12.89□□□□□ -0.35
SS18-225ENST00000585121 STARD3Q14849 445 aa12.89□□□□□ -0.35
SS18-225ENST00000585121 AASDHQ4L235 1098 aaPredicted RBP12.89□□□□□ -0.35
SS18-225ENST00000585121 BEND5Q7L4P6 421 aa12.89□□□□□ -0.35
SS18-225ENST00000585121 TMEM110Q86TL2 294 aa12.89□□□□□ -0.35
SS18-225ENST00000585121 ZNF557Q8N988 423 aaPredicted RBP12.89□□□□□ -0.35
SS18-225ENST00000585121 OLIG1Q8TAK6 271 aa12.89□□□□□ -0.35
SS18-225ENST00000585121 NETO1Q8TDF5 533 aa12.89□□□□□ -0.35
SS18-225ENST00000585121 AZIN2Q96A70 460 aa12.89□□□□□ -0.35
SS18-225ENST00000585121 IRX2Q9BZI1 471 aaPredicted RBP12.89□□□□□ -0.35
SS18-225ENST00000585121 PDCL3Q9H2J4 239 aa12.89□□□□□ -0.35
SS18-225ENST00000585121 VPS45Q9NRW7 570 aa12.89□□□□□ -0.35
SS18-225ENST00000585121 SAMSN1Q9NSI8 373 aaKnown RBP12.89□□□□□ -0.35
SS18-225ENST00000585121 STOML2Q9UJZ1 356 aa12.89□□□□□ -0.35
SS18-225ENST00000585121 NFE2L3Q9Y4A8 694 aa12.89□□□□□ -0.35
SS18-225ENST00000585121 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.89□□□□□ -0.35
SS18-225ENST00000585121 BECN2A8MW95 431 aa12.88□□□□□ -0.35
SS18-225ENST00000585121 E5RJQ4 531 aa12.88□□□□□ -0.35
SS18-225ENST00000585121 IRAK2O43187 625 aa12.88□□□□□ -0.35
SS18-225ENST00000585121 ZNF806P0C7X5 589 aa12.88□□□□□ -0.35
SS18-225ENST00000585121 MPLP40238 635 aa12.88□□□□□ -0.35
SS18-225ENST00000585121 P2RY2P41231 377 aa12.88□□□□□ -0.35
SS18-225ENST00000585121 APBA1Q02410 837 aa12.88□□□□□ -0.35
SS18-225ENST00000585121 CREB5Q02930 508 aa12.88□□□□□ -0.35
SS18-225ENST00000585121 PDCLQ13371 301 aa12.88□□□□□ -0.35
SS18-225ENST00000585121 NNTQ13423 1086 aa12.88□□□□□ -0.35
SS18-225ENST00000585121 RAPGEF1Q13905 1077 aa12.88□□□□□ -0.35
SS18-225ENST00000585121 EIF4HQ15056 248 aaKnown RBP12.88□□□□□ -0.35
SS18-225ENST00000585121 TCP11X2Q5H9J9 407 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms