RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	DHX33	Q9H6R0	707 aa	Known RBP	12	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	ARMCX1	Q9P291	453 aa		12	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	DKK3	Q9UBP4	350 aa		12	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	LOXHD1	Q8IVV2	1947 aa		12	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063		F5H423	210 aa	Predicted RBP	12	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	TSPAN1	O60635	241 aa		12	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	CD48	P09326	243 aa		12	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	KLRC2	P26717	231 aa		12	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	PCK1	P35558	622 aa		12	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	MLLT3	P42568	568 aa	Predicted RBP	12	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	SNRPF	P62306	86 aa	Known RBP	12	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	TAF5	Q15542	800 aa		12	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	ALF	Q53S48	1182 aa		12	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	EFCAB12	Q6NXP0	572 aa		12	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	CROCCP2	Q86T23	111 aa		12	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	WDTC1	Q8N5D0	677 aa		12	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	SPERT	Q8NA61	448 aa		12	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	TEKT4	Q8WW24	435 aa		12	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	PTPRN2	Q92932	1015 aa		12	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	NXF1	Q9UBU9	619 aa	Known RBP	12	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	EIF2B4	Q9UI10	523 aa	Known RBP	12	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063		A0A0B4J269	797 aa		11.99	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	DCAF8L1	A6NGE4	600 aa		11.99	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	LIAS	O43766	372 aa		11.99	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	AVIL	O75366	819 aa		11.99	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	FAM155B	O75949	473 aa		11.99	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	ALAS2	P22557	587 aa		11.99	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	ARL2	P36404	184 aa		11.99	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	TFAM	Q00059	246 aa	Known RBP	11.99	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	RIPK1	Q13546	671 aa		11.99	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	CCDC62	Q6P9F0	684 aa		11.99	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	TTC7B	Q86TV6	843 aa		11.99	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	GADD45GIP1	Q8TAE8	222 aa	Predicted RBP	11.99	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	ZNF395	Q9H8N7	513 aa	Predicted RBP	11.99	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	CYTH4	Q9UIA0	394 aa		11.99	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	SCN4A	P35499	1836 aa		11.99	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	ARID2	Q68CP9	1835 aa		11.99	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	DOCK3	Q8IZD9	2030 aa		11.99	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	DYNC1LI2	O43237	492 aa	Predicted RBP	11.99	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	LGR5	O75473	907 aa		11.99	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	TIPRL	O75663	272 aa		11.99	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	ZFX	P17010	805 aa	Predicted RBP	11.99	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	CTH	P32929	405 aa		11.99	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	LAMTOR4	Q0VGL1	99 aa		11.99	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	SPARCL1	Q14515	664 aa		11.99	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	STAT4	Q14765	748 aa		11.99	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	LIN9	Q5TKA1	542 aa		11.99	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	PPP1R21	Q6ZMI0	780 aa		11.99	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	JOSD2	Q8TAC2	188 aa		11.99	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	TTC17	Q96AE7	1141 aa		11.99	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	SLC7A6OS	Q96CW6	309 aa	Predicted RBP	11.99	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	PSKH2	Q96QS6	385 aa		11.99	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	TRIM56	Q9BRZ2	755 aa	Known RBP	11.99	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	FOXP3	Q9BZS1	431 aa		11.99	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	DENND2D	Q9H6A0	471 aa	Predicted RBP	11.99	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	STARD7	Q9NQZ5	370 aa		11.99	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	RNF19A	Q9NV58	838 aa		11.99	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	HMGXB4	Q9UGU5	601 aa		11.99	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	AKT3	Q9Y243	479 aa		11.99	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	MGEA5	O60502	916 aa		11.98	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	SNAI1	O95863	264 aa	Predicted RBP	11.98	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	VTN	P04004	478 aa		11.98	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	KIT	P10721	976 aa		11.98	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	INSRR	P14616	1297 aa		11.98	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	GPX6	P59796	221 aa		11.98	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	CLDN10	P78369	228 aa		11.98	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	FAXC	Q5TGI0	409 aa		11.98	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	METTL11B	Q5VVY1	283 aa		11.98	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	EEF1DP3	Q658K8	133 aa		11.98	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	C3orf62	Q6ZUJ4	267 aa		11.98	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	PLEKHH3	Q7Z736	793 aa		11.98	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	ZC3H18	Q86VM9	953 aa	Known RBP	11.98	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	FEZF2	Q8TBJ5	459 aa		11.98	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	TCP10L	Q8TDR4	215 aa		11.98	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	CFAP57	Q96MR6	1250 aa		11.98	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	CGRRF1	Q99675	332 aa		11.98	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	OXCT2	Q9BYC2	517 aa	Predicted RBP	11.98	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	SMARCAD1	Q9H4L7	1026 aa		11.98	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	C17orf75	Q9HAS0	396 aa		11.98	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	DDX18	Q9NVP1	670 aa	Known RBP	11.98	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	ZFP69B	Q9UJL9	534 aa		11.98	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	CHMP2B	Q9UQN3	213 aa		11.98	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	ADGRA2	Q96PE1	1338 aa		11.98	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	CCDC195	A0A1B0GUA6	201 aa		11.98	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	PEX11A	O75192	247 aa		11.98	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	ALAD	P13716	330 aa		11.98	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	PBLD	P30039	288 aa	Predicted RBP	11.98	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	HAAO	P46952	286 aa		11.98	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	BASP1	P80723	227 aa	Known RBP	11.98	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	PCSK7	Q16549	785 aa		11.98	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	ZNF792	Q3KQV3	632 aa		11.98	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	PLEKHA7	Q6IQ23	1121 aa		11.98	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	DENND1B	Q6P3S1	775 aa		11.98	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	NLRP9	Q7RTR0	991 aa		11.98	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	COLGALT2	Q8IYK4	626 aa		11.98	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	KIAA0319L	Q8IZA0	1049 aa		11.98	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	ZCCHC9	Q8N567	271 aa	Known RBP	11.98	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	CFAP36	Q96G28	342 aa		11.98	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	SLITRK1	Q96PX8	696 aa		11.98	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	ZIC5	Q96T25	663 aa		11.98	□□□□□ -0.49

Retrieved 100 of 20,778 RNA–protein pairs in 32 ms