RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 SLC9A3R1O14745 358 aaPredicted RBP16.16■□□□□ 0.18
SS18-216ENST00000580751 IRF1P10914 325 aa16.16■□□□□ 0.18
SS18-216ENST00000580751 KRT3P12035 628 aa16.16■□□□□ 0.18
SS18-216ENST00000580751 RRM1P23921 792 aa16.16■□□□□ 0.18
SS18-216ENST00000580751 RNASE9P60153 205 aaKnown RBP16.16■□□□□ 0.18
SS18-216ENST00000580751 ETF1P62495 437 aaKnown RBP16.16■□□□□ 0.18
SS18-216ENST00000580751 PFKPQ01813 784 aa16.16■□□□□ 0.18
SS18-216ENST00000580751 PDGFRLQ15198 375 aa16.16■□□□□ 0.18
SS18-216ENST00000580751 SYPL2Q5VXT5 272 aa16.16■□□□□ 0.18
SS18-216ENST00000580751 TAC4Q86UU9 113 aa16.16■□□□□ 0.18
SS18-216ENST00000580751 TRIM58Q8NG06 486 aa16.16■□□□□ 0.18
SS18-216ENST00000580751 RIN3Q8TB24 985 aa16.16■□□□□ 0.18
SS18-216ENST00000580751 IRF7Q92985 503 aa16.16■□□□□ 0.18
SS18-216ENST00000580751 ZNF653Q96CK0 615 aa16.16■□□□□ 0.18
SS18-216ENST00000580751 DCLK3Q9C098 648 aa16.16■□□□□ 0.18
SS18-216ENST00000580751 FAM204AQ9H8W3 233 aa16.16■□□□□ 0.18
SS18-216ENST00000580751 LZTFL1Q9NQ48 299 aa16.16■□□□□ 0.18
SS18-216ENST00000580751 SLC2A4RGQ9NR83 387 aa16.16■□□□□ 0.18
SS18-216ENST00000580751 GKN1Q9NS71 199 aa16.16■□□□□ 0.18
SS18-216ENST00000580751 PARVAQ9NVD7 372 aa16.16■□□□□ 0.18
SS18-216ENST00000580751 TMEM51Q9NW97 253 aa16.16■□□□□ 0.18
SS18-216ENST00000580751 TBC1D14Q9P2M4 693 aa16.16■□□□□ 0.18
SS18-216ENST00000580751 SFMBT1Q9UHJ3 866 aa16.16■□□□□ 0.18
SS18-216ENST00000580751 TMEM59LQ9UK28 342 aa16.16■□□□□ 0.18
SS18-216ENST00000580751 KIF26AQ9ULI4 1882 aaPredicted RBP16.16■□□□□ 0.18
SS18-216ENST00000580751 MUC3AQ02505 3323 aa16.15■□□□□ 0.18
SS18-216ENST00000580751 RCCD1A6NED2 376 aa16.15■□□□□ 0.18
SS18-216ENST00000580751 MSI1O43347 362 aaKnown RBP16.15■□□□□ 0.18
SS18-216ENST00000580751 STC2O76061 302 aa16.15■□□□□ 0.18
SS18-216ENST00000580751 TRUB2O95900 331 aaKnown RBP16.15■□□□□ 0.18
SS18-216ENST00000580751 GBP1P32455 592 aa16.15■□□□□ 0.18
SS18-216ENST00000580751 FLT3P36888 993 aa16.15■□□□□ 0.18
SS18-216ENST00000580751 IFNAR2P48551 515 aa16.15■□□□□ 0.18
SS18-216ENST00000580751 RING1Q06587 406 aa16.15■□□□□ 0.18
SS18-216ENST00000580751 TRIP4Q15650 581 aaPredicted RBP16.15■□□□□ 0.18
SS18-216ENST00000580751 NUGGCQ68CJ6 796 aa16.15■□□□□ 0.18
SS18-216ENST00000580751 PHLDB2Q86SQ0 1253 aa16.15■□□□□ 0.18
SS18-216ENST00000580751 OSCP1Q8WVF1 389 aa16.15■□□□□ 0.18
SS18-216ENST00000580751 DNASE1L2Q92874 299 aa16.15■□□□□ 0.18
SS18-216ENST00000580751 OTUB2Q96DC9 234 aa16.15■□□□□ 0.18
SS18-216ENST00000580751 ALS2CR12Q96Q35 445 aa16.15■□□□□ 0.18
SS18-216ENST00000580751 THAP2Q9H0W7 228 aa16.15■□□□□ 0.18
SS18-216ENST00000580751 TRPV5Q9NQA5 729 aa16.15■□□□□ 0.18
SS18-216ENST00000580751 DUS2Q9NX74 493 aaKnown RBP16.15■□□□□ 0.18
SS18-216ENST00000580751 CNOT8Q9UFF9 292 aaKnown RBP16.15■□□□□ 0.18
SS18-216ENST00000580751 TLR6Q9Y2C9 796 aa16.15■□□□□ 0.18
SS18-216ENST00000580751 ZNF510Q9Y2H8 683 aa16.15■□□□□ 0.18
SS18-216ENST00000580751 TCRBV5S1A1TA0A578 114 aa16.14■□□□□ 0.17
SS18-216ENST00000580751 SIGLEC16A6NMB1 481 aa16.14■□□□□ 0.17
SS18-216ENST00000580751 IRAK2O43187 625 aa16.14■□□□□ 0.17
SS18-216ENST00000580751 DCXO43602 365 aa16.14■□□□□ 0.17
SS18-216ENST00000580751 IGLV3-25P01717 112 aa16.14■□□□□ 0.17
SS18-216ENST00000580751 HMBSP08397 361 aa16.14■□□□□ 0.17
SS18-216ENST00000580751 SDC4P31431 198 aa16.14■□□□□ 0.17
SS18-216ENST00000580751 HARS2P49590 506 aaKnown RBP16.14■□□□□ 0.17
SS18-216ENST00000580751 TBX4P57082 545 aa16.14■□□□□ 0.17
SS18-216ENST00000580751 SLC25A52Q3SY17 297 aa16.14■□□□□ 0.17
SS18-216ENST00000580751 PLEKHA7Q6IQ23 1121 aa16.14■□□□□ 0.17
SS18-216ENST00000580751 DCUN1D2Q6PH85 259 aa16.14■□□□□ 0.17
SS18-216ENST00000580751 HTR3DQ70Z44 454 aa16.14■□□□□ 0.17
SS18-216ENST00000580751 UNC45BQ8IWX7 931 aa16.14■□□□□ 0.17
SS18-216ENST00000580751 ADAM32Q8TC27 787 aa16.14■□□□□ 0.17
SS18-216ENST00000580751 ATP2A3Q93084 1043 aa16.14■□□□□ 0.17
SS18-216ENST00000580751 NPY6RQ99463 290 aa16.14■□□□□ 0.17
SS18-216ENST00000580751 FAM83CQ9BQN1 747 aa16.14■□□□□ 0.17
SS18-216ENST00000580751 DDX23Q9BUQ8 820 aaKnown RBP16.14■□□□□ 0.17
SS18-216ENST00000580751 PACSIN1Q9BY11 444 aa16.14■□□□□ 0.17
SS18-216ENST00000580751 DDIT4Q9NX09 232 aa16.14■□□□□ 0.17
SS18-216ENST00000580751 GUCA1BQ9UMX6 200 aa16.14■□□□□ 0.17
SS18-216ENST00000580751 WNT6Q9Y6F9 365 aa16.14■□□□□ 0.17
SS18-216ENST00000580751 C2CD4BA6NLJ0 364 aa16.13■□□□□ 0.17
SS18-216ENST00000580751 ARNTLO00327 626 aa16.13■□□□□ 0.17
SS18-216ENST00000580751 ATMINO43313 823 aaPredicted RBP16.13■□□□□ 0.17
SS18-216ENST00000580751 NARSO43776 548 aaKnown RBP16.13■□□□□ 0.17
SS18-216ENST00000580751 LATS1O95835 1130 aa16.13■□□□□ 0.17
SS18-216ENST00000580751 F9P00740 461 aa16.13■□□□□ 0.17
SS18-216ENST00000580751 IGLV3-27P01718 113 aa16.13■□□□□ 0.17
SS18-216ENST00000580751 SLC2A3P11169 496 aa16.13■□□□□ 0.17
SS18-216ENST00000580751 ALADP13716 330 aa16.13■□□□□ 0.17
SS18-216ENST00000580751 PDGFRAP16234 1089 aa16.13■□□□□ 0.17
SS18-216ENST00000580751 DESP17661 470 aa16.13■□□□□ 0.17
SS18-216ENST00000580751 ABCB4P21439 1286 aa16.13■□□□□ 0.17
SS18-216ENST00000580751 CORO1AP31146 461 aaKnown RBP16.13■□□□□ 0.17
SS18-216ENST00000580751 PTPN9P43378 593 aa16.13■□□□□ 0.17
SS18-216ENST00000580751 SULT1E1P49888 294 aa16.13■□□□□ 0.17
SS18-216ENST00000580751 MAMLD1Q13495 774 aa16.13■□□□□ 0.17
SS18-216ENST00000580751 PPP1R15BQ5SWA1 713 aa16.13■□□□□ 0.17
SS18-216ENST00000580751 SYCE1Q8N0S2 351 aa16.13■□□□□ 0.17
SS18-216ENST00000580751 C17orf53Q8N3J3 647 aaPredicted RBP16.13■□□□□ 0.17
SS18-216ENST00000580751 EMC1Q8N766 993 aa16.13■□□□□ 0.17
SS18-216ENST00000580751 JOSD2Q8TAC2 188 aa16.13■□□□□ 0.17
SS18-216ENST00000580751 SLC35G2Q8TBE7 412 aa16.13■□□□□ 0.17
SS18-216ENST00000580751 CSGALNACT1Q8TDX6 532 aa16.13■□□□□ 0.17
SS18-216ENST00000580751 NT5C3BQ969T7 300 aa16.13■□□□□ 0.17
SS18-216ENST00000580751 PGAP3Q96FM1 320 aaPredicted RBP16.13■□□□□ 0.17
SS18-216ENST00000580751 ZFYVE19Q96K21 471 aa16.13■□□□□ 0.17
SS18-216ENST00000580751 MCEEQ96PE7 176 aa16.13■□□□□ 0.17
SS18-216ENST00000580751 PAXBP1Q9Y5B6 917 aa16.13■□□□□ 0.17
SS18-216ENST00000580751 TRIOO75962 3097 aa16.13■□□□□ 0.17
SS18-216ENST00000580751 M0QYT0 321 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms